Wall clock time and date at job start Tue Mar 31 2020 11:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47743 * 2 1 4 4 C 1.50699 * 109.47004 * 120.00127 * 2 1 3 5 5 H 1.07995 * 120.00481 * 120.00085 * 4 2 1 6 6 C 1.37881 * 119.99647 * 299.99421 * 4 2 1 7 7 N 1.31509 * 120.00406 * 0.02562 * 6 4 2 8 8 Si 1.86808 * 119.99963 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46926 * 90.00092 * 8 6 4 10 10 H 1.48494 * 109.47199 * 210.00387 * 8 6 4 11 11 H 1.48502 * 109.47090 * 330.00315 * 8 6 4 12 12 N 1.46506 * 109.47236 * 239.99701 * 2 1 3 13 13 C 1.34771 * 119.99804 * 85.00236 * 12 2 1 14 14 O 1.21355 * 120.00268 * 359.97438 * 13 12 2 15 15 C 1.49363 * 119.99877 * 180.02562 * 13 12 2 16 16 O 1.21374 * 119.99797 * 0.02562 * 15 13 12 17 17 N 1.34771 * 119.99842 * 179.97438 * 15 13 12 18 18 C 1.39760 * 119.99636 * 185.41605 * 17 15 13 19 19 C 1.39197 * 120.10531 * 24.78350 * 18 17 15 20 20 C 1.38213 * 120.12637 * 179.97438 * 19 18 17 21 21 C 1.38029 * 120.42062 * 0.02562 * 20 19 18 22 22 C 1.39634 * 119.95402 * 0.02681 * 21 20 19 23 23 C 1.38211 * 120.10211 * 204.51384 * 18 17 15 24 24 C 1.50777 * 133.38947 * 359.97335 * 23 18 17 25 25 O 1.45396 * 106.40999 * 180.02562 * 24 23 18 26 26 C 1.34355 * 108.98947 * 359.46703 * 25 24 23 27 27 O 1.21467 * 124.89207 * 179.87562 * 26 25 24 28 28 H 1.08999 * 109.47444 * 300.00770 * 1 2 3 29 29 H 1.09007 * 109.46878 * 60.00193 * 1 2 3 30 30 H 1.08994 * 109.47743 * 180.02562 * 1 2 3 31 31 H 0.97000 * 120.00693 * 179.97438 * 7 6 4 32 32 H 0.97005 * 119.99714 * 265.00654 * 12 2 1 33 33 H 0.97002 * 120.00440 * 5.70105 * 17 15 13 34 34 H 1.07998 * 119.93767 * 0.02562 * 19 18 17 35 35 H 1.07999 * 119.79011 * 180.02562 * 20 19 18 36 36 H 1.07998 * 120.02213 * 179.97438 * 21 20 19 37 37 H 1.09006 * 110.07030 * 299.26141 * 24 23 18 38 38 H 1.08999 * 110.07106 * 60.72651 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 1.2304 5 1 2.6531 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9428 0.8298 2.6034 8 14 2.3224 -1.1194 4.0080 9 1 3.6304 -0.5439 4.4119 10 1 1.3443 -0.9488 5.1123 11 1 2.4879 -2.5653 3.7124 12 7 2.0183 -0.6907 -1.1962 13 6 2.1471 -0.0184 -2.3571 14 8 1.8580 1.1590 -2.4118 15 6 2.6444 -0.7227 -3.5767 16 8 2.9322 -1.9005 -3.5224 17 7 2.7727 -0.0505 -4.7378 18 6 3.1290 -0.7326 -5.9044 19 6 2.8600 -2.0928 -6.0277 20 6 3.2117 -2.7677 -7.1814 21 6 3.8317 -2.1016 -8.2193 22 6 4.1075 -0.7375 -8.1064 23 6 3.7445 -0.0576 -6.9416 24 6 4.1654 1.3768 -7.1385 25 8 4.7662 1.4508 -8.4604 26 6 4.7424 0.2298 -9.0204 27 8 5.1696 -0.0360 -10.1260 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 0.7082 1.1611 3.4844 32 1 2.2489 -1.6319 -1.1525 33 1 2.6218 0.9074 -4.7630 34 1 2.3748 -2.6215 -5.2206 35 1 3.0000 -3.8229 -7.2715 36 1 4.1040 -2.6354 -9.1178 37 1 3.2961 2.0324 -7.0855 38 1 4.8940 1.6605 -6.3791 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261144083.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:35 Heat of formation + Delta-G solvation = -105.911606 kcal Electronic energy + Delta-G solvation = -25450.150743 eV Core-core repulsion = 21451.546251 eV Total energy + Delta-G solvation = -3998.604492 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.06172 -40.82453 -39.00256 -38.00168 -37.60727 -35.63528 -34.83341 -32.56584 -32.27535 -30.46184 -29.27272 -27.63946 -25.54969 -25.33650 -24.16426 -22.75521 -21.57131 -20.53181 -19.86362 -18.93030 -18.29698 -17.43688 -17.16266 -16.67156 -16.34028 -16.21264 -15.83001 -15.59166 -15.28426 -14.76128 -14.45626 -14.24372 -14.06255 -13.78163 -13.74279 -13.44501 -13.18845 -12.65745 -12.60121 -12.00202 -11.91973 -11.41349 -11.33125 -11.21088 -11.10911 -11.03614 -10.91543 -10.70759 -10.44696 -10.36394 -9.48258 -9.29645 -9.23110 -8.72888 -8.60170 -8.28470 -6.26589 -4.36823 0.17167 0.60053 1.57835 2.14447 2.31295 2.66630 3.17791 3.20400 3.25019 3.26764 3.27382 3.48485 3.67568 3.77741 4.23879 4.40572 4.62127 4.68569 4.79512 4.84768 4.90504 5.01944 5.06829 5.15411 5.52829 5.63825 5.84162 5.94158 6.20550 6.39538 6.59637 6.70068 6.76319 6.90153 7.04883 7.07591 7.22164 7.49250 7.56606 7.69900 7.94298 8.26316 8.45230 8.72133 9.30780 10.79390 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.029079 B = 0.002505 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.676566 B =11177.112377 C =11575.862314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.262 3.738 3 H 0.055 0.945 4 C -0.539 4.539 5 H 0.065 0.935 6 C 0.069 3.931 7 N -0.883 5.883 8 Si 0.905 3.095 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.272 1.272 12 N -0.664 5.664 13 C 0.494 3.506 14 O -0.533 6.533 15 C 0.511 3.489 16 O -0.498 6.498 17 N -0.651 5.651 18 C 0.180 3.820 19 C -0.091 4.091 20 C -0.102 4.102 21 C -0.054 4.054 22 C -0.173 4.173 23 C -0.140 4.140 24 C 0.095 3.905 25 O -0.316 6.316 26 C 0.525 3.475 27 O -0.453 6.453 28 H 0.095 0.905 29 H 0.017 0.983 30 H 0.031 0.969 31 H 0.267 0.733 32 H 0.403 0.597 33 H 0.425 0.575 34 H 0.162 0.838 35 H 0.143 0.857 36 H 0.138 0.862 37 H 0.119 0.881 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.951 -3.396 -17.369 17.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.161 3.839 3 H 0.073 0.927 4 C -0.577 4.577 5 H 0.083 0.917 6 C -0.135 4.135 7 N -0.520 5.520 8 Si 0.732 3.268 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.313 5.313 13 C 0.272 3.728 14 O -0.411 6.411 15 C 0.294 3.706 16 O -0.372 6.372 17 N -0.296 5.296 18 C 0.085 3.915 19 C -0.111 4.111 20 C -0.120 4.120 21 C -0.073 4.073 22 C -0.175 4.175 23 C -0.144 4.144 24 C 0.021 3.979 25 O -0.231 6.231 26 C 0.367 3.633 27 O -0.338 6.338 28 H 0.114 0.886 29 H 0.036 0.964 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.238 0.762 33 H 0.264 0.736 34 H 0.179 0.821 35 H 0.161 0.839 36 H 0.156 0.844 37 H 0.137 0.863 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.091 -3.163 -17.673 18.218 hybrid contribution 0.274 -0.471 0.979 1.120 sum 3.365 -3.634 -16.694 17.413 Atomic orbital electron populations 1.22106 0.97700 0.99648 1.01310 1.19018 0.91521 0.94149 0.79200 0.92695 1.21172 1.32998 1.13599 0.89964 0.91700 1.24875 0.94599 0.94916 0.99134 1.69878 1.35497 1.22356 1.24222 0.86385 0.78648 0.79913 0.81841 1.20438 1.20960 1.19699 1.46546 1.60934 1.14601 1.09225 1.19553 0.81480 0.87331 0.84395 1.90748 1.50822 1.15089 1.84459 1.21105 0.77542 0.87238 0.84702 1.90702 1.46050 1.15681 1.84730 1.43280 1.66996 1.13352 1.06021 1.16861 0.97348 0.92200 0.85139 1.21816 0.97984 0.92365 0.98976 1.21149 0.97951 1.00778 0.92139 1.20881 0.95761 0.91410 0.99211 1.20576 1.05289 0.95832 0.95845 1.20386 1.01304 0.96926 0.95752 1.22369 1.00016 0.93312 0.82244 1.87257 1.73914 1.31112 1.30804 1.20466 0.76170 0.81326 0.85321 1.90889 1.44885 1.79612 1.18411 0.88626 0.96435 0.95022 0.92346 0.76237 0.73643 0.82096 0.83922 0.84414 0.86288 0.86260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 9.26 37.15 0.34 -3.07 16 2 C 0.26 6.16 2.56 -69.08 -0.18 5.98 16 3 H 0.06 1.46 7.58 -51.93 -0.39 1.07 16 4 C -0.54 -13.52 8.73 -34.44 -0.30 -13.82 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -23.51 11.32 55.43 0.63 -22.88 16 8 Si 0.91 19.79 29.54 -169.99 -5.02 14.77 16 9 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 12 N -0.66 -12.91 5.06 -55.40 -0.28 -13.19 16 13 C 0.49 8.74 7.85 -11.63 -0.09 8.65 16 14 O -0.53 -10.51 16.15 5.49 0.09 -10.42 16 15 C 0.51 7.26 7.69 -11.63 -0.09 7.17 16 16 O -0.50 -7.54 13.63 5.48 0.07 -7.46 16 17 N -0.65 -7.19 5.35 -10.39 -0.06 -7.24 16 18 C 0.18 1.86 6.41 -83.90 -0.54 1.32 16 19 C -0.09 -0.93 8.73 -39.23 -0.34 -1.27 16 20 C -0.10 -0.83 10.01 -39.67 -0.40 -1.23 16 21 C -0.05 -0.47 10.10 -39.14 -0.40 -0.86 16 22 C -0.17 -1.75 6.27 -105.09 -0.66 -2.41 16 23 C -0.14 -1.30 6.28 -104.06 -0.65 -1.95 16 24 C 0.09 0.69 7.84 36.04 0.28 0.97 16 25 O -0.32 -3.29 11.13 -39.21 -0.44 -3.72 16 26 C 0.53 6.19 8.58 34.48 0.30 6.48 16 27 O -0.45 -6.59 18.04 -18.92 -0.34 -6.93 16 28 H 0.10 2.40 6.07 -51.93 -0.32 2.08 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 32 H 0.40 7.22 8.01 -40.82 -0.33 6.89 16 33 H 0.43 3.98 8.18 -40.82 -0.33 3.65 16 34 H 0.16 1.79 5.78 -52.49 -0.30 1.48 16 35 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 36 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 337.50 15.07 5.09 5.09 Total: -1.00 -30.22 337.50 -6.82 -37.04 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -3.75 Total: 7.33 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: -2.82 Total: 7.62 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 0.29 Total: -43.32 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.61 Total: -28.53 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.22 -6.82 -37.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261144083.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.871 kcal (2) G-P(sol) polarization free energy of solvation -30.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds