Wall clock time and date at job start Tue Mar 31 2020 11:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47743 * 2 1 4 4 C 1.50699 * 109.47004 * 120.00127 * 2 1 3 5 5 H 1.07995 * 120.00481 * 120.00085 * 4 2 1 6 6 C 1.37881 * 119.99647 * 299.99421 * 4 2 1 7 7 N 1.31509 * 120.00406 * 0.02562 * 6 4 2 8 8 Si 1.86808 * 119.99963 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46926 * 90.00092 * 8 6 4 10 10 H 1.48494 * 109.47199 * 210.00387 * 8 6 4 11 11 H 1.48502 * 109.47090 * 330.00315 * 8 6 4 12 12 N 1.46506 * 109.47236 * 239.99701 * 2 1 3 13 13 C 1.34771 * 119.99804 * 85.00236 * 12 2 1 14 14 O 1.21355 * 120.00268 * 359.97438 * 13 12 2 15 15 C 1.49363 * 119.99877 * 180.02562 * 13 12 2 16 16 O 1.21374 * 119.99797 * 0.02562 * 15 13 12 17 17 N 1.34771 * 119.99842 * 179.97438 * 15 13 12 18 18 C 1.39760 * 119.99636 * 185.41605 * 17 15 13 19 19 C 1.39197 * 120.10531 * 24.78350 * 18 17 15 20 20 C 1.38213 * 120.12637 * 179.97438 * 19 18 17 21 21 C 1.38029 * 120.42062 * 0.02562 * 20 19 18 22 22 C 1.39634 * 119.95402 * 0.02681 * 21 20 19 23 23 C 1.38211 * 120.10211 * 204.51384 * 18 17 15 24 24 C 1.50777 * 133.38947 * 359.97335 * 23 18 17 25 25 O 1.45396 * 106.40999 * 180.02562 * 24 23 18 26 26 C 1.34355 * 108.98947 * 359.46703 * 25 24 23 27 27 O 1.21467 * 124.89207 * 179.87562 * 26 25 24 28 28 H 1.08999 * 109.47444 * 300.00770 * 1 2 3 29 29 H 1.09007 * 109.46878 * 60.00193 * 1 2 3 30 30 H 1.08994 * 109.47743 * 180.02562 * 1 2 3 31 31 H 0.97000 * 120.00693 * 179.97438 * 7 6 4 32 32 H 0.97005 * 119.99714 * 265.00654 * 12 2 1 33 33 H 0.97002 * 120.00440 * 5.70105 * 17 15 13 34 34 H 1.07998 * 119.93767 * 0.02562 * 19 18 17 35 35 H 1.07999 * 119.79011 * 180.02562 * 20 19 18 36 36 H 1.07998 * 120.02213 * 179.97438 * 21 20 19 37 37 H 1.09006 * 110.07030 * 299.26141 * 24 23 18 38 38 H 1.08999 * 110.07106 * 60.72651 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 1.2304 5 1 2.6531 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9428 0.8298 2.6034 8 14 2.3224 -1.1194 4.0080 9 1 3.6304 -0.5439 4.4119 10 1 1.3443 -0.9488 5.1123 11 1 2.4879 -2.5653 3.7124 12 7 2.0183 -0.6907 -1.1962 13 6 2.1471 -0.0184 -2.3571 14 8 1.8580 1.1590 -2.4118 15 6 2.6444 -0.7227 -3.5767 16 8 2.9322 -1.9005 -3.5224 17 7 2.7727 -0.0505 -4.7378 18 6 3.1290 -0.7326 -5.9044 19 6 2.8600 -2.0928 -6.0277 20 6 3.2117 -2.7677 -7.1814 21 6 3.8317 -2.1016 -8.2193 22 6 4.1075 -0.7375 -8.1064 23 6 3.7445 -0.0576 -6.9416 24 6 4.1654 1.3768 -7.1385 25 8 4.7662 1.4508 -8.4604 26 6 4.7424 0.2298 -9.0204 27 8 5.1696 -0.0360 -10.1260 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 0.7082 1.1611 3.4844 32 1 2.2489 -1.6319 -1.1525 33 1 2.6218 0.9074 -4.7630 34 1 2.3748 -2.6215 -5.2206 35 1 3.0000 -3.8229 -7.2715 36 1 4.1040 -2.6354 -9.1178 37 1 3.2961 2.0324 -7.0855 38 1 4.8940 1.6605 -6.3791 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261144083.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:35 Heat of formation + Delta-G solvation = -126.195443 kcal Electronic energy + Delta-G solvation = -25451.030316 eV Core-core repulsion = 21451.546251 eV Total energy + Delta-G solvation = -3999.484065 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.88407 -41.94471 -40.22502 -39.08848 -38.49355 -37.07666 -36.08470 -34.34686 -33.02743 -31.40558 -30.94412 -28.35532 -27.37284 -26.53700 -25.19455 -23.52631 -22.96409 -21.64916 -21.21592 -20.22252 -19.16452 -18.50543 -18.02046 -17.88742 -17.74170 -17.15482 -16.97495 -16.90533 -16.61303 -16.00795 -15.66679 -15.23411 -15.05952 -14.84906 -14.79591 -14.47083 -14.43007 -14.08523 -13.76323 -13.49766 -13.05469 -12.91281 -12.80963 -12.68412 -12.50949 -12.28055 -12.12655 -12.08539 -11.91064 -11.62794 -11.15749 -10.70872 -10.60354 -10.16160 -9.98947 -9.40921 -8.20193 -6.37115 -0.61179 -0.25072 0.47121 1.15280 1.29617 1.46101 1.47769 1.57516 1.92198 2.08069 2.37948 2.50570 2.55491 2.61910 2.96833 3.11238 3.41427 3.72643 3.96163 4.11216 4.13471 4.19244 4.33325 4.49023 4.71078 4.75246 4.89535 4.91964 5.02678 5.07150 5.21299 5.30881 5.42768 5.44111 5.59115 5.63819 5.74914 5.89132 6.04788 6.20238 6.41952 6.64767 6.72233 7.06138 7.35372 8.85724 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.029079 B = 0.002505 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.676566 B =11177.112377 C =11575.862314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.269 3.731 3 H 0.017 0.983 4 C -0.552 4.552 5 H 0.071 0.929 6 C 0.021 3.979 7 N -0.912 5.912 8 Si 0.969 3.031 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.263 1.263 12 N -0.669 5.669 13 C 0.495 3.505 14 O -0.554 6.554 15 C 0.524 3.476 16 O -0.507 6.507 17 N -0.633 5.633 18 C 0.162 3.838 19 C -0.098 4.098 20 C -0.094 4.094 21 C -0.046 4.046 22 C -0.190 4.190 23 C -0.126 4.126 24 C 0.089 3.911 25 O -0.324 6.324 26 C 0.526 3.474 27 O -0.491 6.491 28 H 0.072 0.928 29 H 0.022 0.978 30 H 0.040 0.960 31 H 0.267 0.733 32 H 0.411 0.589 33 H 0.434 0.566 34 H 0.153 0.847 35 H 0.172 0.828 36 H 0.155 0.845 37 H 0.149 0.851 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.363 -4.568 -17.933 18.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.167 3.833 3 H 0.035 0.965 4 C -0.590 4.590 5 H 0.089 0.911 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.794 3.206 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.187 1.187 12 N -0.318 5.318 13 C 0.275 3.725 14 O -0.434 6.434 15 C 0.306 3.694 16 O -0.382 6.382 17 N -0.279 5.279 18 C 0.068 3.932 19 C -0.118 4.118 20 C -0.112 4.112 21 C -0.065 4.065 22 C -0.192 4.192 23 C -0.129 4.129 24 C 0.016 3.984 25 O -0.239 6.239 26 C 0.370 3.630 27 O -0.380 6.380 28 H 0.090 0.910 29 H 0.041 0.959 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.247 0.753 33 H 0.273 0.727 34 H 0.171 0.829 35 H 0.190 0.810 36 H 0.172 0.828 37 H 0.166 0.834 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.509 -4.330 -18.273 19.104 hybrid contribution 0.147 -0.065 1.065 1.077 sum 3.656 -4.394 -17.208 18.133 Atomic orbital electron populations 1.21933 0.97431 0.99873 1.00376 1.18607 0.91685 0.92422 0.80635 0.96533 1.21498 1.32971 1.13788 0.90724 0.91058 1.25691 0.94751 0.95539 1.02019 1.70005 1.36550 1.23651 1.24819 0.85391 0.77867 0.79148 0.78239 1.20338 1.20855 1.18733 1.46260 1.61706 1.14910 1.08968 1.20055 0.80399 0.87038 0.84989 1.90733 1.51389 1.16223 1.85055 1.20179 0.78079 0.86803 0.84331 1.90715 1.46894 1.15771 1.84774 1.43027 1.65953 1.13640 1.05296 1.16874 0.98954 0.92486 0.84935 1.21907 0.97960 0.92418 0.99506 1.21410 0.96857 1.02027 0.90951 1.21181 0.94522 0.90968 0.99852 1.20596 1.06339 0.96447 0.95849 1.20421 0.99946 0.97776 0.94775 1.22765 1.01632 0.92718 0.81261 1.87235 1.73900 1.30698 1.32092 1.20667 0.75466 0.81880 0.84991 1.90861 1.46775 1.80306 1.20019 0.90956 0.95891 0.94077 0.92343 0.75268 0.72651 0.82929 0.81048 0.82751 0.83361 0.84182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.36 9.26 71.98 0.67 -5.69 16 2 C 0.27 12.82 2.56 44.24 0.11 12.94 16 3 H 0.02 0.92 7.58 -2.39 -0.02 0.90 16 4 C -0.55 -27.67 8.73 25.60 0.22 -27.44 16 5 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 6 C 0.02 1.06 5.30 84.66 0.45 1.51 16 7 N -0.91 -49.28 11.32 21.45 0.24 -49.04 16 8 Si 0.97 40.26 29.54 68.60 2.03 42.28 16 9 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 10 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 11 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 12 N -0.67 -25.89 5.06 -447.54 -2.27 -28.15 16 13 C 0.50 17.28 7.85 87.24 0.68 17.96 16 14 O -0.55 -21.81 16.15 -3.26 -0.05 -21.86 16 15 C 0.52 14.19 7.69 87.24 0.67 14.86 16 16 O -0.51 -14.58 13.63 -3.32 -0.05 -14.63 16 17 N -0.63 -12.81 5.35 -305.14 -1.63 -14.44 16 18 C 0.16 3.00 6.41 38.10 0.24 3.24 16 19 C -0.10 -1.78 8.73 22.49 0.20 -1.59 16 20 C -0.09 -1.28 10.01 22.21 0.22 -1.06 16 21 C -0.05 -0.70 10.10 22.56 0.23 -0.47 16 22 C -0.19 -3.50 6.27 -20.17 -0.13 -3.63 16 23 C -0.13 -2.05 6.28 -19.50 -0.12 -2.17 16 24 C 0.09 1.08 7.84 71.26 0.56 1.64 16 25 O -0.32 -6.28 11.13 -52.99 -0.59 -6.87 16 26 C 0.53 11.91 8.58 70.25 0.60 12.51 16 27 O -0.49 -14.24 18.04 19.63 0.35 -13.88 16 28 H 0.07 3.70 6.07 -2.39 -0.01 3.69 16 29 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 32 H 0.41 14.49 8.01 -92.70 -0.74 13.74 16 33 H 0.43 7.25 8.18 -92.71 -0.76 6.49 16 34 H 0.15 3.11 5.78 -2.91 -0.02 3.09 16 35 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 36 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 37 H 0.15 0.96 8.14 -2.38 -0.02 0.94 16 38 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -65.61 337.50 2.30 -63.31 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: -0.35 Total: 20.67 kcal Atomic # 6 Polarization: 18.00 SS G_CDS: 4.61 Total: 22.61 kcal Atomic # 7 Polarization: -87.97 SS G_CDS: -3.65 Total: -91.63 kcal Atomic # 8 Polarization: -56.91 SS G_CDS: -0.33 Total: -57.24 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.28 kcal Total: -65.61 2.30 -63.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261144083.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.885 kcal (2) G-P(sol) polarization free energy of solvation -65.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds