Wall clock time and date at job start Tue Mar 31 2020 11:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.47435 * 125.58344 * 2 1 4 4 C 1.53014 * 103.20909 * 179.97438 * 3 2 1 5 5 C 1.52306 * 116.34492 * 228.67089 * 4 3 2 6 6 N 1.47284 * 87.68028 * 217.93170 * 5 4 3 7 7 S 1.65598 * 135.92665 * 206.11106 * 6 5 4 8 8 O 1.42104 * 104.27651 * 333.92868 * 7 6 5 9 9 O 1.42095 * 104.28128 * 206.07279 * 7 6 5 10 10 C 1.81399 * 104.45041 * 89.99677 * 7 6 5 11 11 C 1.52997 * 109.47147 * 180.02562 * 10 7 6 12 12 C 1.53006 * 109.47127 * 180.02562 * 11 10 7 13 13 C 1.50698 * 109.47184 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99819 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00046 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00192 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47309 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47510 * 119.99847 * 17 15 13 20 20 H 1.48506 * 109.47246 * 239.99882 * 17 15 13 21 21 C 1.47293 * 88.15545 * 26.36640 * 6 5 4 22 22 O 1.44494 * 105.29160 * 0.02562 * 4 3 2 23 23 C 1.34200 * 125.58499 * 179.97438 * 2 1 3 24 24 O 1.21514 * 123.09725 * 0.03264 * 23 2 1 25 25 H 1.09004 * 109.46931 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47372 * 300.01835 * 1 2 3 27 27 H 1.09000 * 109.47135 * 60.02165 * 1 2 3 28 28 H 1.08992 * 110.67235 * 61.52957 * 3 2 1 29 29 H 1.08999 * 110.66888 * 298.38448 * 3 2 1 30 30 H 1.08999 * 113.51681 * 103.22899 * 5 4 3 31 31 H 1.09001 * 113.51396 * 332.63144 * 5 4 3 32 32 H 1.08996 * 109.47243 * 60.00524 * 10 7 6 33 33 H 1.09001 * 109.47190 * 300.00108 * 10 7 6 34 34 H 1.09001 * 109.47502 * 60.00399 * 11 10 7 35 35 H 1.09001 * 109.47289 * 300.00196 * 11 10 7 36 36 H 1.09001 * 109.47002 * 299.99574 * 12 11 10 37 37 H 1.08993 * 109.46955 * 60.00011 * 12 11 10 38 38 H 0.96996 * 120.00505 * 179.97438 * 16 15 13 39 39 H 1.08993 * 113.51775 * 88.33585 * 21 6 5 40 40 H 1.09005 * 113.51712 * 218.93559 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3229 1.1990 0.0000 4 6 3.7378 0.6166 0.0007 5 6 4.7056 1.1931 1.0258 6 7 5.7590 1.0879 0.0019 7 16 7.4068 0.9234 0.0027 8 8 7.8150 1.4909 1.2399 9 8 7.8164 1.4908 -1.2340 10 6 7.6827 -0.8695 0.0030 11 6 9.1860 -1.1541 0.0045 12 6 9.4187 -2.6664 0.0041 13 6 10.8994 -2.9468 0.0061 14 1 11.6040 -2.1282 0.0072 15 6 11.3546 -4.2482 0.0056 16 7 10.4967 -5.2449 0.0039 17 14 13.1900 -4.5957 0.0075 18 1 13.9369 -3.3122 0.0087 19 1 13.5448 -5.3765 1.2197 20 1 13.5475 -5.3748 -1.2053 21 6 4.7074 1.1995 -1.0234 22 8 3.5597 -0.8173 0.0004 23 6 2.2459 -1.0914 0.0005 24 8 1.8042 -2.2234 0.0004 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5141 0.8898 27 1 -0.3633 0.5135 -0.8902 28 1 2.1514 1.7948 0.8964 29 1 2.1525 1.7940 -0.8972 30 1 4.8676 0.5422 1.8850 31 1 4.4767 2.2200 1.3105 32 1 7.2307 -1.3068 -0.8872 33 1 7.2297 -1.3067 0.8928 34 1 9.6378 -0.7169 0.8949 35 1 9.6395 -0.7169 -0.8851 36 1 8.9653 -3.1040 0.8935 37 1 8.9671 -3.1032 -0.8865 38 1 10.8168 -6.1605 0.0032 39 1 4.4791 2.2282 -1.3020 40 1 4.8710 0.5540 -1.8864 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001309597038.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:18 Heat of formation + Delta-G solvation = -95.534425 kcal Electronic energy + Delta-G solvation = -24833.169004 eV Core-core repulsion = 20970.458451 eV Total energy + Delta-G solvation = -3862.710552 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.113 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.36083 -39.37296 -36.97275 -36.81480 -35.90124 -35.85011 -34.65796 -32.16929 -30.42087 -27.94278 -27.74606 -26.81111 -25.55179 -23.68111 -22.44975 -21.07646 -20.44494 -18.88964 -17.82010 -17.51653 -17.47178 -16.73458 -16.51877 -16.15542 -16.11866 -15.54296 -14.82770 -14.64329 -14.64177 -14.44521 -14.32688 -14.16931 -13.47743 -13.12415 -13.09268 -12.69580 -12.58483 -12.28525 -12.17985 -12.02055 -11.93654 -11.78314 -11.54415 -11.25336 -10.96595 -10.92105 -10.83639 -10.77210 -10.42695 -9.94339 -9.72809 -9.42874 -9.29943 -9.04873 -8.38850 -6.02892 -4.06408 0.27044 2.01688 2.33901 2.49258 2.76036 3.31093 3.38442 3.43124 3.45023 3.57896 3.90994 3.99436 4.02828 4.31053 4.44484 4.67084 4.70389 4.87056 4.93213 4.95352 5.01631 5.01816 5.14128 5.16816 5.21835 5.33120 5.41543 5.59761 5.86150 5.89728 5.93638 6.27370 6.45660 6.88010 6.93127 7.60315 7.65500 7.69637 7.94918 8.34760 9.00089 9.58219 11.08290 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.017366 B = 0.003092 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.965766 B = 9052.445707 C =10346.476391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.637 5.637 3 C 0.087 3.913 4 C 0.046 3.954 5 C 0.135 3.865 6 N -1.044 6.044 7 S 2.622 3.378 8 O -0.954 6.954 9 O -0.954 6.954 10 C -0.600 4.600 11 C -0.106 4.106 12 C 0.030 3.970 13 C -0.526 4.526 14 H 0.058 0.942 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.894 3.106 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.136 3.864 22 O -0.288 6.288 23 C 0.642 3.358 24 O -0.514 6.514 25 H 0.089 0.911 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.021 0.979 37 H 0.021 0.979 38 H 0.261 0.739 39 H 0.112 0.888 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.779 17.828 -0.013 28.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.386 5.386 3 C -0.037 4.037 4 C 0.005 3.995 5 C 0.009 3.991 6 N -0.880 5.880 7 S 2.721 3.279 8 O -0.945 6.945 9 O -0.945 6.945 10 C -0.732 4.732 11 C -0.145 4.145 12 C -0.008 4.008 13 C -0.564 4.564 14 H 0.077 0.923 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.722 3.278 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.209 1.209 21 C 0.010 3.990 22 O -0.198 6.198 23 C 0.395 3.605 24 O -0.398 6.398 25 H 0.107 0.893 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.114 0.886 31 H 0.129 0.871 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.071 0.929 39 H 0.129 0.871 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -21.977 17.607 -0.013 28.160 hybrid contribution 0.671 -0.904 0.000 1.125 sum -21.306 16.704 -0.013 27.073 Atomic orbital electron populations 1.21518 0.74741 1.04488 1.01945 1.48050 1.07522 1.05788 1.77289 1.22599 0.86969 0.89009 1.05172 1.23861 0.94924 0.79331 1.01398 1.22670 0.82270 1.01770 0.92356 1.60365 1.22260 1.89558 1.15802 1.04908 0.70233 0.78635 0.74095 1.93568 1.79068 1.76357 1.45485 1.93566 1.79032 1.76364 1.45516 1.30522 1.08507 1.22578 1.11641 1.21528 0.87036 1.04062 1.01916 1.19069 0.97043 0.86798 0.97883 1.21279 0.91943 0.92158 1.51067 0.92328 1.25030 0.97948 0.96316 0.95134 1.69970 1.33831 0.98937 1.50530 0.86499 0.85313 0.78371 0.77616 1.19626 1.20940 1.20945 1.22730 0.82247 1.01702 0.92352 1.87316 1.23396 1.22836 1.86236 1.18702 0.79988 0.85513 0.76265 1.91075 1.73344 1.20607 1.54730 0.89260 0.91471 0.91468 0.88041 0.88042 0.88552 0.87069 0.85240 0.85242 0.91560 0.91568 0.96038 0.96034 0.92920 0.87061 0.88547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.50 11.24 59.85 0.67 1.17 16 2 N -0.64 -4.54 3.38 -186.97 -0.63 -5.17 16 3 C 0.09 0.32 7.23 -3.52 -0.03 0.30 16 4 C 0.05 0.32 1.91 -91.18 -0.17 0.15 16 5 C 0.14 0.96 8.20 -7.81 -0.06 0.90 16 6 N -1.04 -10.83 4.10 -125.20 -0.51 -11.34 16 7 S 2.62 38.47 5.96 -107.50 -0.64 37.82 16 8 O -0.95 -16.42 18.07 -57.54 -1.04 -17.46 16 9 O -0.95 -16.42 18.06 -57.54 -1.04 -17.46 16 10 C -0.60 -9.71 6.18 37.16 0.23 -9.49 16 11 C -0.11 -2.20 5.16 -26.73 -0.14 -2.33 16 12 C 0.03 0.79 4.97 -27.88 -0.14 0.66 16 13 C -0.53 -15.09 9.11 -34.44 -0.31 -15.41 16 14 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -27.14 13.29 55.43 0.74 -26.41 16 17 Si 0.89 21.93 29.54 -169.99 -5.02 16.90 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 C 0.14 0.96 8.22 -7.66 -0.06 0.90 16 22 O -0.29 -3.37 10.98 -38.94 -0.43 -3.80 16 23 C 0.64 7.69 8.86 53.80 0.48 8.17 16 24 O -0.51 -8.34 17.32 -19.09 -0.33 -8.67 16 25 H 0.09 0.53 7.54 -51.93 -0.39 0.14 16 26 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 27 H 0.07 0.17 8.14 -51.93 -0.42 -0.26 16 28 H 0.10 0.13 7.99 -51.93 -0.42 -0.29 16 29 H 0.10 0.13 7.99 -51.93 -0.41 -0.29 16 30 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.11 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.13 1.95 8.14 -51.93 -0.42 1.53 16 33 H 0.13 1.95 8.14 -51.92 -0.42 1.53 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 355.83 15.07 5.36 5.36 Total: -1.00 -40.50 355.83 -9.02 -49.52 By element: Atomic # 1 Polarization: -0.04 SS G_CDS: -5.84 Total: -5.88 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: 0.36 Total: -13.42 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: -0.41 Total: -42.92 kcal Atomic # 8 Polarization: -44.55 SS G_CDS: -2.84 Total: -47.39 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 38.47 SS G_CDS: -0.64 Total: 37.82 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -40.50 -9.02 -49.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001309597038.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.014 kcal (2) G-P(sol) polarization free energy of solvation -40.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds