Wall clock time and date at job start Tue Mar 31 2020 11:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.47435 * 125.58344 * 2 1 4 4 C 1.53014 * 103.20909 * 179.97438 * 3 2 1 5 5 C 1.52306 * 116.34492 * 228.67089 * 4 3 2 6 6 N 1.47284 * 87.68028 * 217.93170 * 5 4 3 7 7 S 1.65598 * 135.92665 * 206.11106 * 6 5 4 8 8 O 1.42104 * 104.27651 * 333.92868 * 7 6 5 9 9 O 1.42095 * 104.28128 * 206.07279 * 7 6 5 10 10 C 1.81399 * 104.45041 * 89.99677 * 7 6 5 11 11 C 1.52997 * 109.47147 * 180.02562 * 10 7 6 12 12 C 1.53006 * 109.47127 * 180.02562 * 11 10 7 13 13 C 1.50698 * 109.47184 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99819 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00046 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00192 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47309 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47510 * 119.99847 * 17 15 13 20 20 H 1.48506 * 109.47246 * 239.99882 * 17 15 13 21 21 C 1.47293 * 88.15545 * 26.36640 * 6 5 4 22 22 O 1.44494 * 105.29160 * 0.02562 * 4 3 2 23 23 C 1.34200 * 125.58499 * 179.97438 * 2 1 3 24 24 O 1.21514 * 123.09725 * 0.03264 * 23 2 1 25 25 H 1.09004 * 109.46931 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47372 * 300.01835 * 1 2 3 27 27 H 1.09000 * 109.47135 * 60.02165 * 1 2 3 28 28 H 1.08992 * 110.67235 * 61.52957 * 3 2 1 29 29 H 1.08999 * 110.66888 * 298.38448 * 3 2 1 30 30 H 1.08999 * 113.51681 * 103.22899 * 5 4 3 31 31 H 1.09001 * 113.51396 * 332.63144 * 5 4 3 32 32 H 1.08996 * 109.47243 * 60.00524 * 10 7 6 33 33 H 1.09001 * 109.47190 * 300.00108 * 10 7 6 34 34 H 1.09001 * 109.47502 * 60.00399 * 11 10 7 35 35 H 1.09001 * 109.47289 * 300.00196 * 11 10 7 36 36 H 1.09001 * 109.47002 * 299.99574 * 12 11 10 37 37 H 1.08993 * 109.46955 * 60.00011 * 12 11 10 38 38 H 0.96996 * 120.00505 * 179.97438 * 16 15 13 39 39 H 1.08993 * 113.51775 * 88.33585 * 21 6 5 40 40 H 1.09005 * 113.51712 * 218.93559 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3229 1.1990 0.0000 4 6 3.7378 0.6166 0.0007 5 6 4.7056 1.1931 1.0258 6 7 5.7590 1.0879 0.0019 7 16 7.4068 0.9234 0.0027 8 8 7.8150 1.4909 1.2399 9 8 7.8164 1.4908 -1.2340 10 6 7.6827 -0.8695 0.0030 11 6 9.1860 -1.1541 0.0045 12 6 9.4187 -2.6664 0.0041 13 6 10.8994 -2.9468 0.0061 14 1 11.6040 -2.1282 0.0072 15 6 11.3546 -4.2482 0.0056 16 7 10.4967 -5.2449 0.0039 17 14 13.1900 -4.5957 0.0075 18 1 13.9369 -3.3122 0.0087 19 1 13.5448 -5.3765 1.2197 20 1 13.5475 -5.3748 -1.2053 21 6 4.7074 1.1995 -1.0234 22 8 3.5597 -0.8173 0.0004 23 6 2.2459 -1.0914 0.0005 24 8 1.8042 -2.2234 0.0004 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5141 0.8898 27 1 -0.3633 0.5135 -0.8902 28 1 2.1514 1.7948 0.8964 29 1 2.1525 1.7940 -0.8972 30 1 4.8676 0.5422 1.8850 31 1 4.4767 2.2200 1.3105 32 1 7.2307 -1.3068 -0.8872 33 1 7.2297 -1.3067 0.8928 34 1 9.6378 -0.7169 0.8949 35 1 9.6395 -0.7169 -0.8851 36 1 8.9653 -3.1040 0.8935 37 1 8.9671 -3.1032 -0.8865 38 1 10.8168 -6.1605 0.0032 39 1 4.4791 2.2282 -1.3020 40 1 4.8710 0.5540 -1.8864 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001309597038.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:17 Heat of formation + Delta-G solvation = -128.499976 kcal Electronic energy + Delta-G solvation = -24834.598497 eV Core-core repulsion = 20970.458451 eV Total energy + Delta-G solvation = -3864.140046 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.113 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.01511 -40.10444 -38.25365 -37.69501 -37.14101 -36.52244 -36.48971 -34.21123 -30.98467 -29.71547 -28.43057 -27.34833 -26.19342 -25.57133 -23.17056 -22.40733 -21.59127 -19.89347 -18.81958 -18.56799 -18.19610 -18.17646 -17.37523 -17.30530 -17.20614 -16.58325 -16.43613 -16.05173 -15.33052 -15.29314 -15.05737 -15.00699 -14.54435 -14.12897 -14.04222 -13.87465 -13.62294 -13.40801 -13.29588 -13.24085 -13.19921 -13.04718 -12.81846 -12.79417 -12.65605 -12.30374 -12.18638 -11.86400 -11.82225 -11.43107 -11.42268 -11.16530 -10.62593 -10.24610 -9.91291 -8.25839 -6.38361 -0.90205 1.37591 1.38000 1.42555 1.51941 1.52240 1.55248 2.24379 2.37094 2.70557 2.84053 3.07251 3.08438 3.16904 3.37348 3.70481 3.77041 3.83383 4.30983 4.38611 4.43181 4.51898 4.53896 4.54602 4.60923 4.61142 4.74023 4.83922 4.88419 4.91586 4.96181 5.00529 5.25312 5.38271 5.40105 5.55432 5.74648 6.14189 6.26523 6.77810 6.88388 7.31537 8.86199 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.017366 B = 0.003092 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.965766 B = 9052.445707 C =10346.476391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.626 5.626 3 C 0.093 3.907 4 C 0.041 3.959 5 C 0.131 3.869 6 N -1.054 6.054 7 S 2.664 3.336 8 O -0.978 6.978 9 O -0.978 6.978 10 C -0.612 4.612 11 C -0.105 4.105 12 C 0.030 3.970 13 C -0.551 4.551 14 H 0.064 0.936 15 C -0.001 4.001 16 N -0.933 5.933 17 Si 0.969 3.031 18 H -0.261 1.261 19 H -0.276 1.276 20 H -0.276 1.276 21 C 0.131 3.869 22 O -0.322 6.322 23 C 0.631 3.369 24 O -0.577 6.577 25 H 0.064 0.936 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.087 0.913 31 H 0.159 0.841 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.069 0.931 35 H 0.069 0.931 36 H -0.002 1.002 37 H -0.002 1.002 38 H 0.265 0.735 39 H 0.160 0.840 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.777 21.178 -0.013 31.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.374 5.374 3 C -0.030 4.030 4 C 0.000 4.000 5 C 0.007 3.993 6 N -0.894 5.894 7 S 2.761 3.239 8 O -0.969 6.969 9 O -0.969 6.969 10 C -0.742 4.742 11 C -0.144 4.144 12 C -0.008 4.008 13 C -0.589 4.589 14 H 0.082 0.918 15 C -0.199 4.199 16 N -0.572 5.572 17 Si 0.792 3.208 18 H -0.185 1.185 19 H -0.202 1.202 20 H -0.202 1.202 21 C 0.007 3.993 22 O -0.232 6.232 23 C 0.385 3.615 24 O -0.466 6.466 25 H 0.082 0.918 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.158 0.842 29 H 0.158 0.842 30 H 0.106 0.894 31 H 0.177 0.823 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.074 0.926 39 H 0.177 0.823 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -22.967 20.995 -0.013 31.117 hybrid contribution 0.850 -1.874 0.000 2.058 sum -22.117 19.121 -0.013 29.237 Atomic orbital electron populations 1.21777 0.73108 1.03774 1.04584 1.48253 1.08473 1.05528 1.75123 1.22995 0.83374 0.87633 1.08963 1.24106 0.97234 0.77296 1.01332 1.23160 0.80474 1.04290 0.91417 1.59954 1.21593 1.89050 1.18810 1.03292 0.71125 0.76650 0.72820 1.93530 1.80698 1.76110 1.46563 1.93528 1.80663 1.76118 1.46590 1.30582 1.05298 1.26128 1.12207 1.21315 0.90616 1.00181 1.02280 1.18962 0.95803 0.90508 0.95552 1.21757 0.93347 0.92739 1.51101 0.91801 1.26029 1.03336 0.96076 0.94468 1.70102 1.36324 0.99480 1.51345 0.85347 0.78877 0.78592 0.77935 1.18454 1.20156 1.20166 1.23222 0.80442 1.04233 0.91401 1.87262 1.23629 1.26184 1.86155 1.18984 0.80357 0.85892 0.76269 1.91008 1.74436 1.23323 1.57812 0.91757 0.88756 0.88754 0.84218 0.84221 0.89449 0.82328 0.84783 0.84785 0.91195 0.91205 0.98371 0.98366 0.92606 0.82315 0.89429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.67 11.24 127.77 1.44 2.10 16 2 N -0.63 -7.37 3.38 -976.70 -3.30 -10.67 16 3 C 0.09 0.23 7.23 86.21 0.62 0.85 16 4 C 0.04 0.45 1.91 -11.15 -0.02 0.43 16 5 C 0.13 1.43 8.20 83.51 0.69 2.11 16 6 N -1.05 -19.49 4.10 -551.52 -2.26 -21.76 16 7 S 2.66 76.04 5.96 -56.49 -0.34 75.70 16 8 O -0.98 -32.70 18.07 -127.65 -2.31 -35.00 16 9 O -0.98 -32.69 18.06 -127.65 -2.31 -34.99 16 10 C -0.61 -20.47 6.18 71.98 0.44 -20.02 16 11 C -0.10 -4.50 5.16 30.60 0.16 -4.34 16 12 C 0.03 1.64 4.97 29.85 0.15 1.79 16 13 C -0.55 -32.49 9.11 25.60 0.23 -32.26 16 14 H 0.06 3.59 7.74 -2.91 -0.02 3.57 16 15 C 0.00 -0.07 5.46 84.65 0.46 0.40 16 16 N -0.93 -58.27 13.29 21.45 0.28 -57.99 16 17 Si 0.97 45.41 29.54 68.60 2.03 47.44 16 18 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 21 C 0.13 1.43 8.22 83.60 0.69 2.11 16 22 O -0.32 -7.54 10.98 -51.41 -0.56 -8.10 16 23 C 0.63 15.26 8.86 129.88 1.15 16.41 16 24 O -0.58 -20.00 17.32 19.62 0.34 -19.66 16 25 H 0.06 0.76 7.54 -2.38 -0.02 0.74 16 26 H 0.09 0.11 8.14 -2.39 -0.02 0.09 16 27 H 0.09 0.11 8.14 -2.39 -0.02 0.09 16 28 H 0.14 -0.60 7.99 -2.39 -0.02 -0.62 16 29 H 0.14 -0.60 7.99 -2.39 -0.02 -0.61 16 30 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.16 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.13 4.26 8.14 -2.39 -0.02 4.24 16 33 H 0.13 4.26 8.14 -2.39 -0.02 4.24 16 34 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 35 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 36 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 37 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 38 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 39 H 0.16 0.27 8.14 -2.39 -0.02 0.25 16 40 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 Total: -1.00 -94.08 355.83 -1.38 -95.46 By element: Atomic # 1 Polarization: -1.05 SS G_CDS: 1.04 Total: -0.01 kcal Atomic # 6 Polarization: -36.43 SS G_CDS: 6.01 Total: -30.42 kcal Atomic # 7 Polarization: -85.13 SS G_CDS: -5.28 Total: -90.41 kcal Atomic # 8 Polarization: -92.92 SS G_CDS: -4.84 Total: -97.76 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Atomic # 16 Polarization: 76.04 SS G_CDS: -0.34 Total: 75.70 kcal Total: -94.08 -1.38 -95.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001309597038.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.042 kcal (2) G-P(sol) polarization free energy of solvation -94.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds