Wall clock time and date at job start Tue Mar 31 2020 12:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34979 * 125.97555 * 124.71172 * 10 9 7 12 12 C 1.35215 * 107.87970 * 179.83561 * 11 10 9 13 13 C 1.40453 * 107.86384 * 0.42460 * 12 11 10 14 14 N 1.39936 * 125.98062 * 179.73491 * 13 12 11 15 15 C 1.34770 * 119.99877 * 359.97438 * 14 13 12 16 16 O 1.21389 * 120.00037 * 359.97438 * 15 14 13 17 17 C 1.49338 * 120.00038 * 179.97438 * 15 14 13 18 18 O 1.21361 * 120.00093 * 359.97438 * 17 15 14 19 19 N 1.34778 * 120.00273 * 179.97438 * 17 15 14 20 20 C 1.46496 * 120.00123 * 179.97438 * 19 17 15 21 21 C 1.50706 * 109.47371 * 180.02562 * 20 19 17 22 22 C 1.34510 * 125.79213 * 89.71027 * 21 20 19 23 23 C 1.41382 * 106.84241 * 179.89295 * 22 21 20 24 24 C 1.34510 * 106.83738 * 0.37782 * 23 22 21 25 25 O 1.34298 * 108.42383 * 359.76686 * 24 23 22 26 26 N 1.31273 * 108.04361 * 359.73764 * 13 12 11 27 27 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 29 29 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 30 30 H 1.08008 * 126.05606 * 359.97438 * 11 10 9 31 31 H 1.07999 * 126.06598 * 180.14037 * 12 11 10 32 32 H 0.96998 * 119.99672 * 179.97438 * 14 13 12 33 33 H 0.96999 * 119.99647 * 0.02562 * 19 17 15 34 34 H 1.08998 * 109.47099 * 299.99592 * 20 19 17 35 35 H 1.09002 * 109.47504 * 60.00159 * 20 19 17 36 36 H 1.08003 * 126.57845 * 0.03605 * 22 21 20 37 37 H 1.08000 * 126.57853 * 180.16038 * 23 22 21 38 38 H 1.08009 * 125.78564 * 179.74762 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6216 0.8837 12 6 3.2623 -5.4442 0.5307 13 6 3.8669 -4.9136 -0.6206 14 7 4.9587 -5.4620 -1.3029 15 6 5.5249 -6.6027 -0.8620 16 8 5.0882 -7.1542 0.1272 17 6 6.6897 -7.1882 -1.5904 18 8 7.1261 -6.6371 -2.5797 19 7 7.2564 -8.3288 -1.1493 20 6 8.3986 -8.9034 -1.8642 21 6 8.8401 -10.1674 -1.1724 22 6 8.3844 -11.4062 -1.4313 23 6 9.0667 -12.2844 -0.5582 24 6 9.8922 -11.5287 0.1878 25 8 9.7508 -10.2473 -0.1886 26 7 3.2287 -3.8132 -0.9446 27 1 -0.4850 -0.8400 0.0004 28 1 0.6281 -2.5591 0.8866 29 1 0.6207 -2.5548 -0.8933 30 1 1.5910 -4.7502 1.7306 31 1 3.5575 -6.3465 1.0456 32 1 5.3079 -5.0210 -2.0931 33 1 6.9073 -8.7695 -0.3588 34 1 8.1074 -9.1334 -2.8891 35 1 9.2202 -8.1872 -1.8719 36 1 7.6418 -11.6782 -2.1668 37 1 8.9453 -13.3560 -0.4990 38 1 10.5561 -11.8910 0.9589 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319194004.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:51 Heat of formation + Delta-G solvation = 37.525821 kcal Electronic energy + Delta-G solvation = -24546.594568 eV Core-core repulsion = 20586.502741 eV Total energy + Delta-G solvation = -3960.091827 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.07781 -41.17519 -40.29543 -38.62733 -35.94437 -34.87529 -33.70632 -33.44272 -31.08271 -30.94530 -29.51121 -27.36672 -26.35079 -24.56955 -22.92084 -22.25629 -21.44629 -21.14135 -20.60319 -19.84390 -18.75422 -17.66197 -17.24077 -17.17316 -16.58801 -16.32786 -16.29287 -15.57702 -15.19639 -15.09132 -14.52070 -14.28715 -13.98615 -13.80853 -13.46561 -13.32326 -13.29270 -13.14858 -12.55801 -12.49871 -12.34647 -12.05543 -11.60137 -11.19873 -10.85778 -10.60752 -10.43536 -10.18325 -10.14320 -9.75053 -9.73868 -9.07020 -9.05197 -8.60287 -8.33573 -7.66525 -6.60834 -4.35165 1.03543 1.08543 1.90704 2.19887 2.46890 2.54401 2.92064 3.13486 3.36158 3.40680 3.56293 3.57244 3.74670 4.03493 4.27320 4.39440 4.52223 4.53803 4.82128 4.97265 5.12697 5.29877 5.31010 5.42457 5.54964 5.59257 5.67651 5.96922 5.98380 6.20404 6.29886 6.49411 6.61083 6.68534 6.73931 7.13501 7.21973 7.46893 7.63223 7.74261 7.84838 8.30900 8.42249 8.58080 9.32983 10.76999 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.031486 B = 0.002040 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.082943 B =13725.425788 C =14108.124944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.023 3.977 3 Si 1.079 2.921 4 H -0.285 1.285 5 H -0.286 1.286 6 H -0.281 1.281 7 C -0.609 4.609 8 H 0.064 0.936 9 C 0.248 3.752 10 N -0.313 5.313 11 C 0.053 3.947 12 C -0.283 4.283 13 C 0.252 3.748 14 N -0.597 5.597 15 C 0.514 3.486 16 O -0.498 6.498 17 C 0.520 3.480 18 O -0.512 6.512 19 N -0.700 5.700 20 C 0.203 3.797 21 C -0.043 4.043 22 C -0.178 4.178 23 C -0.219 4.219 24 C -0.025 4.025 25 O -0.170 6.170 26 N -0.291 5.291 27 H 0.267 0.733 28 H 0.048 0.952 29 H 0.037 0.963 30 H 0.171 0.829 31 H 0.163 0.837 32 H 0.424 0.576 33 H 0.418 0.582 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.153 0.847 37 H 0.152 0.848 38 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.871 -23.900 -0.677 29.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.181 4.181 3 Si 0.906 3.094 4 H -0.212 1.212 5 H -0.212 1.212 6 H -0.207 1.207 7 C -0.647 4.647 8 H 0.083 0.917 9 C 0.130 3.870 10 N -0.094 5.094 11 C -0.097 4.097 12 C -0.314 4.314 13 C -0.001 4.001 14 N -0.246 5.246 15 C 0.294 3.706 16 O -0.371 6.371 17 C 0.300 3.700 18 O -0.386 6.386 19 N -0.355 5.355 20 C 0.080 3.920 21 C -0.093 4.093 22 C -0.198 4.198 23 C -0.238 4.238 24 C -0.094 4.094 25 O -0.066 6.066 26 N -0.122 5.122 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.188 0.812 31 H 0.180 0.820 32 H 0.262 0.738 33 H 0.255 0.745 34 H 0.125 0.875 35 H 0.111 0.889 36 H 0.171 0.829 37 H 0.169 0.831 38 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 16.676 -20.926 -1.414 26.795 hybrid contribution 0.161 -2.655 0.591 2.725 sum 16.837 -23.581 -0.823 28.986 Atomic orbital electron populations 1.70828 1.06779 1.30458 1.45904 1.25932 0.96306 1.02842 0.93069 0.83382 0.74733 0.74284 0.76976 1.21194 1.21182 1.20688 1.22126 0.95448 0.90358 1.56797 0.91727 1.19822 0.86268 0.82773 0.98167 1.48875 1.23110 1.19479 1.17975 1.22584 1.00388 0.89999 0.96701 1.21525 1.02221 1.06332 1.01359 1.19005 0.91516 0.94654 0.94914 1.41971 1.28918 1.23597 1.30084 1.19816 0.84212 0.81436 0.85151 1.90722 1.61858 1.59811 1.24678 1.19869 0.83913 0.81447 0.84761 1.90814 1.62652 1.60051 1.25098 1.45764 1.32645 1.24942 1.32180 1.19674 0.88636 0.89325 0.94323 1.22151 0.95847 0.96789 0.94517 1.21766 1.03146 0.91856 1.03026 1.21913 1.00807 1.01264 0.99810 1.24191 1.02863 0.80343 1.01955 1.84056 1.49458 1.29533 1.43510 1.77435 1.03201 1.15753 1.15813 0.92246 0.93453 0.94565 0.81221 0.81999 0.73833 0.74539 0.87500 0.88863 0.82947 0.83063 0.77736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.14 13.65 55.43 0.76 -25.38 16 2 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 3 Si 1.08 24.93 29.90 -169.99 -5.08 19.85 16 4 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.61 -17.00 9.24 -34.44 -0.32 -17.32 16 8 H 0.06 1.89 7.81 -52.49 -0.41 1.48 16 9 C 0.25 6.17 5.57 -5.19 -0.03 6.14 16 10 N -0.31 -7.16 3.67 -62.56 -0.23 -7.39 16 11 C 0.05 1.02 11.43 -17.24 -0.20 0.82 16 12 C -0.28 -5.35 9.60 -39.82 -0.38 -5.74 16 13 C 0.25 4.99 8.10 -154.55 -1.25 3.74 16 14 N -0.60 -9.58 5.43 -11.58 -0.06 -9.65 16 15 C 0.51 7.32 7.85 -11.64 -0.09 7.22 16 16 O -0.50 -7.70 13.60 5.46 0.07 -7.63 16 17 C 0.52 6.15 7.89 -11.64 -0.09 6.06 16 18 O -0.51 -6.92 16.48 5.49 0.09 -6.83 16 19 N -0.70 -6.32 5.54 -61.95 -0.34 -6.66 16 20 C 0.20 1.48 6.20 -5.19 -0.03 1.45 16 21 C -0.04 -0.32 6.69 -35.62 -0.24 -0.56 16 22 C -0.18 -1.20 10.81 -39.70 -0.43 -1.63 16 23 C -0.22 -1.32 10.91 -39.70 -0.43 -1.75 16 24 C -0.03 -0.15 12.09 29.41 0.36 0.21 16 25 O -0.17 -1.38 10.65 5.72 0.06 -1.32 16 26 N -0.29 -6.69 12.42 31.41 0.39 -6.30 16 27 H 0.27 7.53 7.22 -40.82 -0.29 7.24 16 28 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 29 H 0.04 0.94 8.00 -51.93 -0.42 0.52 16 30 H 0.17 2.61 8.06 -52.48 -0.42 2.18 16 31 H 0.16 2.86 5.91 -52.49 -0.31 2.55 16 32 H 0.42 6.20 8.29 -40.82 -0.34 5.86 16 33 H 0.42 3.54 7.93 -40.82 -0.32 3.22 16 34 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.15 0.80 8.06 -52.48 -0.42 0.38 16 37 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 38 H 0.21 0.45 8.06 -52.48 -0.42 0.03 16 LS Contribution 346.14 15.07 5.22 5.22 Total: -1.00 -33.81 346.14 -6.20 -40.01 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -3.84 Total: 6.88 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -3.24 Total: -0.80 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: 0.51 Total: -55.38 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: 0.23 Total: -15.77 kcal Atomic # 14 Polarization: 24.93 SS G_CDS: -5.08 Total: 19.85 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.81 -6.20 -40.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319194004.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.537 kcal (2) G-P(sol) polarization free energy of solvation -33.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds