Wall clock time and date at job start Tue Mar 31 2020 12:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34979 * 125.97555 * 124.71172 * 10 9 7 12 12 C 1.35215 * 107.87970 * 179.83561 * 11 10 9 13 13 C 1.40453 * 107.86384 * 0.42460 * 12 11 10 14 14 N 1.39936 * 125.98062 * 179.73491 * 13 12 11 15 15 C 1.34770 * 119.99877 * 359.97438 * 14 13 12 16 16 O 1.21389 * 120.00037 * 359.97438 * 15 14 13 17 17 C 1.49338 * 120.00038 * 179.97438 * 15 14 13 18 18 O 1.21361 * 120.00093 * 359.97438 * 17 15 14 19 19 N 1.34778 * 120.00273 * 179.97438 * 17 15 14 20 20 C 1.46496 * 120.00123 * 179.97438 * 19 17 15 21 21 C 1.50706 * 109.47371 * 180.02562 * 20 19 17 22 22 C 1.34510 * 125.79213 * 89.71027 * 21 20 19 23 23 C 1.41382 * 106.84241 * 179.89295 * 22 21 20 24 24 C 1.34510 * 106.83738 * 0.37782 * 23 22 21 25 25 O 1.34298 * 108.42383 * 359.76686 * 24 23 22 26 26 N 1.31273 * 108.04361 * 359.73764 * 13 12 11 27 27 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 29 29 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 30 30 H 1.08008 * 126.05606 * 359.97438 * 11 10 9 31 31 H 1.07999 * 126.06598 * 180.14037 * 12 11 10 32 32 H 0.96998 * 119.99672 * 179.97438 * 14 13 12 33 33 H 0.96999 * 119.99647 * 0.02562 * 19 17 15 34 34 H 1.08998 * 109.47099 * 299.99592 * 20 19 17 35 35 H 1.09002 * 109.47504 * 60.00159 * 20 19 17 36 36 H 1.08003 * 126.57845 * 0.03605 * 22 21 20 37 37 H 1.08000 * 126.57853 * 180.16038 * 23 22 21 38 38 H 1.08009 * 125.78564 * 179.74762 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6216 0.8837 12 6 3.2623 -5.4442 0.5307 13 6 3.8669 -4.9136 -0.6206 14 7 4.9587 -5.4620 -1.3029 15 6 5.5249 -6.6027 -0.8620 16 8 5.0882 -7.1542 0.1272 17 6 6.6897 -7.1882 -1.5904 18 8 7.1261 -6.6371 -2.5797 19 7 7.2564 -8.3288 -1.1493 20 6 8.3986 -8.9034 -1.8642 21 6 8.8401 -10.1674 -1.1724 22 6 8.3844 -11.4062 -1.4313 23 6 9.0667 -12.2844 -0.5582 24 6 9.8922 -11.5287 0.1878 25 8 9.7508 -10.2473 -0.1886 26 7 3.2287 -3.8132 -0.9446 27 1 -0.4850 -0.8400 0.0004 28 1 0.6281 -2.5591 0.8866 29 1 0.6207 -2.5548 -0.8933 30 1 1.5910 -4.7502 1.7306 31 1 3.5575 -6.3465 1.0456 32 1 5.3079 -5.0210 -2.0931 33 1 6.9073 -8.7695 -0.3588 34 1 8.1074 -9.1334 -2.8891 35 1 9.2202 -8.1872 -1.8719 36 1 7.6418 -11.6782 -2.1668 37 1 8.9453 -13.3560 -0.4990 38 1 10.5561 -11.8910 0.9589 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319194004.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:50 Heat of formation + Delta-G solvation = 13.469831 kcal Electronic energy + Delta-G solvation = -24547.637714 eV Core-core repulsion = 20586.502741 eV Total energy + Delta-G solvation = -3961.134973 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.56803 -42.53004 -41.57653 -39.77344 -36.97320 -36.22592 -35.50665 -33.94742 -32.77101 -31.64423 -31.10187 -28.63811 -27.63920 -25.83016 -24.68029 -22.76838 -22.72431 -22.02211 -21.67926 -21.09217 -19.81727 -19.24436 -18.49688 -18.10602 -17.86089 -17.35015 -17.12865 -16.72935 -16.36304 -16.20521 -15.73415 -15.56789 -15.47345 -15.09299 -14.86332 -14.32133 -14.10994 -13.96806 -13.79859 -13.77723 -13.56203 -13.26688 -13.05021 -12.82403 -12.60904 -12.17011 -11.98630 -11.69891 -11.03734 -10.98858 -10.86159 -10.69170 -10.53107 -9.92784 -9.56808 -9.31398 -8.78925 -6.56298 -0.02786 0.42301 0.93210 1.04397 1.50578 1.58086 1.59771 1.66111 1.77351 1.82316 2.02725 2.18659 2.46965 2.56661 3.00774 3.18221 3.55208 3.79824 4.08876 4.09251 4.10612 4.32734 4.42576 4.50085 4.60744 4.73755 4.76033 4.86361 4.87058 4.90974 4.98823 5.13030 5.52270 5.54701 5.68321 5.71853 5.89428 6.05160 6.13772 6.24824 6.40227 6.45800 6.68292 6.85925 7.18723 8.58353 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.031486 B = 0.002040 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.082943 B =13725.425788 C =14108.124944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.018 4.018 3 Si 1.121 2.879 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.276 1.276 7 C -0.622 4.622 8 H 0.044 0.956 9 C 0.258 3.742 10 N -0.339 5.339 11 C 0.060 3.940 12 C -0.285 4.285 13 C 0.261 3.739 14 N -0.599 5.599 15 C 0.519 3.481 16 O -0.507 6.507 17 C 0.530 3.470 18 O -0.529 6.529 19 N -0.683 5.683 20 C 0.204 3.796 21 C -0.061 4.061 22 C -0.180 4.180 23 C -0.232 4.232 24 C -0.025 4.025 25 O -0.190 6.190 26 N -0.340 5.340 27 H 0.262 0.738 28 H 0.059 0.941 29 H 0.019 0.981 30 H 0.208 0.792 31 H 0.178 0.822 32 H 0.429 0.571 33 H 0.422 0.578 34 H 0.121 0.879 35 H 0.094 0.906 36 H 0.165 0.835 37 H 0.170 0.830 38 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.207 -25.453 0.062 31.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.218 4.218 3 Si 0.942 3.058 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.201 1.201 7 C -0.660 4.660 8 H 0.063 0.937 9 C 0.138 3.862 10 N -0.121 5.121 11 C -0.088 4.088 12 C -0.316 4.316 13 C 0.006 3.994 14 N -0.249 5.249 15 C 0.300 3.700 16 O -0.380 6.380 17 C 0.310 3.690 18 O -0.405 6.405 19 N -0.337 5.337 20 C 0.082 3.918 21 C -0.111 4.111 22 C -0.200 4.200 23 C -0.251 4.251 24 C -0.093 4.093 25 O -0.086 6.086 26 N -0.171 5.171 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.036 0.964 30 H 0.224 0.776 31 H 0.196 0.804 32 H 0.268 0.732 33 H 0.259 0.741 34 H 0.139 0.861 35 H 0.112 0.888 36 H 0.182 0.818 37 H 0.187 0.813 38 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 18.031 -22.547 -0.660 28.878 hybrid contribution -0.157 -2.410 0.392 2.447 sum 17.874 -24.956 -0.268 30.698 Atomic orbital electron populations 1.70918 1.07391 1.30256 1.47308 1.27236 0.96460 1.06017 0.92108 0.82852 0.73805 0.71078 0.78043 1.19265 1.20732 1.20076 1.22304 0.94668 0.92167 1.56876 0.93735 1.19479 0.86363 0.82654 0.97658 1.48641 1.23731 1.20217 1.19498 1.23263 1.00528 0.88452 0.96598 1.21774 1.02003 1.06703 1.01091 1.19328 0.91510 0.93628 0.94889 1.42098 1.28284 1.24244 1.30289 1.20290 0.84349 0.80531 0.84873 1.90699 1.62250 1.59878 1.25155 1.19330 0.83259 0.82063 0.84386 1.90820 1.63065 1.60814 1.25843 1.45771 1.32395 1.23624 1.31921 1.19799 0.87815 0.89432 0.94737 1.22134 0.96721 0.96917 0.95304 1.22059 1.03029 0.91827 1.03073 1.22243 1.00849 1.02274 0.99743 1.24910 1.02784 0.79499 1.02068 1.84044 1.49854 1.30808 1.43889 1.77344 1.04589 1.17873 1.17323 0.92856 0.92366 0.96362 0.77573 0.80449 0.73217 0.74058 0.86129 0.88778 0.81789 0.81268 0.74676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.62 13.65 21.45 0.29 -53.33 16 2 C -0.02 -1.02 5.46 84.65 0.46 -0.56 16 3 Si 1.12 49.95 29.90 68.60 2.05 52.00 16 4 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 6 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.62 -35.28 9.24 25.60 0.24 -35.04 16 8 H 0.04 2.66 7.81 -2.91 -0.02 2.64 16 9 C 0.26 13.06 5.57 85.64 0.48 13.54 16 10 N -0.34 -15.62 3.67 -351.84 -1.29 -16.91 16 11 C 0.06 2.23 11.43 83.51 0.95 3.19 16 12 C -0.29 -10.43 9.60 22.11 0.21 -10.21 16 13 C 0.26 10.27 8.10 133.40 1.08 11.35 16 14 N -0.60 -18.99 5.43 -308.90 -1.68 -20.67 16 15 C 0.52 14.20 7.85 87.24 0.69 14.88 16 16 O -0.51 -14.90 13.60 -3.37 -0.05 -14.95 16 17 C 0.53 11.88 7.89 87.23 0.69 12.57 16 18 O -0.53 -13.77 16.48 -3.28 -0.05 -13.82 16 19 N -0.68 -11.28 5.54 -468.25 -2.59 -13.87 16 20 C 0.20 2.68 6.20 85.64 0.53 3.21 16 21 C -0.06 -0.83 6.69 24.83 0.17 -0.66 16 22 C -0.18 -2.11 10.81 22.19 0.24 -1.87 16 23 C -0.23 -2.30 10.91 22.19 0.24 -2.06 16 24 C -0.02 -0.24 12.09 66.97 0.81 0.57 16 25 O -0.19 -2.80 10.65 -2.44 -0.03 -2.83 16 26 N -0.34 -15.90 12.42 -54.54 -0.68 -16.58 16 27 H 0.26 14.99 7.22 -92.71 -0.67 14.32 16 28 H 0.06 2.79 7.94 -2.39 -0.02 2.78 16 29 H 0.02 0.99 8.00 -2.39 -0.02 0.97 16 30 H 0.21 5.85 8.06 -2.91 -0.02 5.83 16 31 H 0.18 5.91 5.91 -2.91 -0.02 5.89 16 32 H 0.43 12.57 8.29 -92.71 -0.77 11.80 16 33 H 0.42 6.45 7.93 -92.71 -0.74 5.72 16 34 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 37 H 0.17 0.95 8.06 -2.91 -0.02 0.92 16 38 H 0.24 0.38 8.06 -2.91 -0.02 0.36 16 Total: -1.00 -72.61 346.14 2.50 -70.11 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: -0.26 Total: 21.95 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: 6.79 Total: 8.90 kcal Atomic # 7 Polarization: -115.41 SS G_CDS: -5.95 Total: -121.36 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -0.13 Total: -31.59 kcal Atomic # 14 Polarization: 49.95 SS G_CDS: 2.05 Total: 52.00 kcal Total: -72.61 2.50 -70.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319194004.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.578 kcal (2) G-P(sol) polarization free energy of solvation -72.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds