Wall clock time and date at job start Tue Mar 31 2020 11:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76204 * 102.99881 * 2 1 4 4 C 1.38963 * 120.05258 * 359.72296 * 3 2 1 5 5 C 1.38084 * 119.93941 * 179.77024 * 4 3 2 6 6 C 1.38503 * 120.05338 * 0.50539 * 5 4 3 7 7 F 1.35101 * 119.94102 * 179.76753 * 6 5 4 8 8 C 1.38453 * 120.11266 * 359.74973 * 6 5 4 9 9 C 1.38122 * 120.05241 * 359.97438 * 8 6 5 10 10 C 1.50702 * 120.02453 * 179.97438 * 9 8 6 11 11 N 1.46503 * 109.46914 * 260.02434 * 10 9 8 12 12 C 1.38819 * 120.00026 * 180.02562 * 11 10 9 13 13 C 1.39799 * 119.58352 * 359.72088 * 12 11 10 14 14 C 1.38599 * 119.48964 * 179.79042 * 13 12 11 15 15 C 1.38391 * 118.68125 * 0.48127 * 14 13 12 16 16 C 1.40548 * 119.14772 * 359.74204 * 15 14 13 17 17 C 1.41317 * 119.78669 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99564 * 0.02562 * 17 16 15 19 19 C 1.40021 * 120.00418 * 180.02562 * 17 16 15 20 20 N 1.30752 * 119.99981 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00138 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47347 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47563 * 119.99529 * 21 19 17 24 24 H 1.48502 * 109.47098 * 239.99565 * 21 19 17 25 25 N 1.31956 * 119.58514 * 179.97438 * 12 11 10 26 26 H 1.09002 * 109.47124 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46975 * 60.00064 * 1 2 3 28 28 H 1.09004 * 109.47147 * 300.00027 * 1 2 3 29 29 H 1.07994 * 120.03147 * 0.02562 * 4 3 2 30 30 H 1.07999 * 119.96713 * 180.25462 * 5 4 3 31 31 H 1.07996 * 119.97136 * 180.02562 * 8 6 5 32 32 H 1.09005 * 109.47468 * 20.01800 * 10 9 8 33 33 H 1.08997 * 109.47337 * 140.01880 * 10 9 8 34 34 H 0.96996 * 119.99920 * 359.97438 * 11 10 9 35 35 H 1.07996 * 120.25938 * 359.97438 * 13 12 11 36 36 H 1.07996 * 120.65780 * 180.22146 * 14 13 12 37 37 H 1.07997 * 120.42589 * 179.77142 * 15 14 13 38 38 H 0.97001 * 119.99795 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1949 2.6655 -0.0058 5 6 1.5082 4.0104 -0.0010 6 6 2.8331 4.4140 -0.0010 7 9 3.1369 5.7304 -0.0010 8 6 3.8466 3.4707 -0.0005 9 6 3.5384 2.1243 0.0004 10 6 4.6420 1.0981 0.0003 11 7 4.8359 0.5896 -1.3599 12 6 5.8049 -0.3724 -1.6097 13 6 6.5950 -0.8457 -0.5579 14 6 7.5590 -1.8094 -0.8088 15 6 7.7171 -2.2691 -2.1045 16 6 6.8952 -1.7507 -3.1199 17 6 7.0448 -2.2110 -4.4476 18 1 7.7886 -2.9591 -4.6792 19 6 6.2288 -1.6973 -5.4629 20 7 5.3280 -0.7920 -5.1824 21 14 6.4270 -2.3052 -7.2180 22 1 7.5080 -3.3221 -7.2706 23 1 5.1526 -2.9127 -7.6785 24 1 6.7785 -1.1637 -8.1005 25 7 5.9722 -0.8250 -2.8379 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 0.1617 2.3513 -0.0099 30 1 0.7193 4.7480 -0.0014 31 1 4.8789 3.7880 -0.0001 32 1 5.5659 1.5580 0.3513 33 1 4.3724 0.2744 0.6612 34 1 4.2866 0.9247 -2.0857 35 1 6.4532 -0.4655 0.4429 36 1 8.1773 -2.1909 -0.0097 37 1 8.4622 -3.0170 -2.3323 38 1 4.7624 -0.4364 -5.8857 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320363682.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:58 Heat of formation + Delta-G solvation = 21.223378 kcal Electronic energy + Delta-G solvation = -23059.103962 eV Core-core repulsion = 19521.138117 eV Total energy + Delta-G solvation = -3537.965845 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.090 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.97432 -39.38397 -38.09639 -35.20855 -33.32981 -31.75733 -30.98764 -30.24213 -28.99792 -28.61948 -25.59617 -25.25106 -23.08440 -21.98187 -21.28517 -20.29116 -17.84235 -17.37492 -17.24257 -16.71850 -16.14052 -15.69168 -15.00170 -14.90282 -14.74207 -14.56567 -14.19428 -13.92023 -13.87922 -13.30702 -13.27331 -13.05538 -12.94503 -12.56797 -12.41608 -12.14938 -11.85569 -11.78144 -11.20827 -11.16033 -10.93205 -10.57202 -10.41397 -10.17091 -9.87873 -9.65817 -9.45810 -9.22473 -8.84380 -7.85658 -7.45255 -7.39494 -6.46263 -6.27507 -4.42246 0.84194 0.96914 1.43163 2.33764 2.90634 3.14517 3.18884 3.24232 3.29223 3.34068 4.02268 4.06433 4.37076 4.53588 4.58864 4.87319 4.89024 4.89584 4.90686 5.11005 5.45047 5.47484 5.54688 5.62161 5.87602 5.90678 5.94674 6.10554 6.20067 6.30910 6.61582 6.63289 6.90530 6.93821 6.98180 7.29841 7.64284 7.85583 7.96448 8.21846 8.40350 8.72805 8.85371 9.17171 10.29961 10.45707 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.013019 B = 0.003544 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.152060 B = 7899.172318 C = 8020.902700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 S -0.063 6.063 3 C -0.083 4.083 4 C -0.112 4.112 5 C -0.131 4.131 6 C 0.087 3.913 7 F -0.140 7.140 8 C -0.115 4.115 9 C -0.051 4.051 10 C 0.180 3.820 11 N -0.729 5.729 12 C 0.415 3.585 13 C -0.367 4.367 14 C -0.031 4.031 15 C -0.317 4.317 16 C 0.293 3.707 17 C -0.435 4.435 18 H 0.083 0.917 19 C 0.072 3.928 20 N -0.714 5.714 21 Si 0.903 3.097 22 H -0.261 1.261 23 H -0.275 1.275 24 H -0.275 1.275 25 N -0.529 5.529 26 H 0.108 0.892 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.133 0.867 30 H 0.136 0.864 31 H 0.143 0.857 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.397 0.603 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.902 7.311 9.651 16.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.332 4.332 2 S 0.181 5.819 3 C -0.197 4.197 4 C -0.136 4.136 5 C -0.152 4.152 6 C 0.065 3.935 7 F -0.119 7.119 8 C -0.136 4.136 9 C -0.058 4.058 10 C 0.054 3.946 11 N -0.366 5.366 12 C 0.176 3.824 13 C -0.393 4.393 14 C -0.056 4.056 15 C -0.340 4.340 16 C 0.166 3.834 17 C -0.467 4.467 18 H 0.101 0.899 19 C -0.153 4.153 20 N -0.336 5.336 21 Si 0.727 3.273 22 H -0.185 1.185 23 H -0.200 1.200 24 H -0.200 1.200 25 N -0.250 5.250 26 H 0.127 0.873 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.151 0.849 30 H 0.154 0.846 31 H 0.161 0.839 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.232 0.768 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.888 6.692 9.080 15.677 hybrid contribution -0.486 1.019 -0.316 1.173 sum -11.374 7.712 8.763 16.299 Atomic orbital electron populations 1.23805 0.96855 1.07205 1.05288 1.86356 1.03934 1.00574 1.90992 1.21858 0.95819 0.98060 1.03975 1.20974 0.98602 0.91932 1.02084 1.20994 0.94928 0.96612 1.02656 1.17605 0.93570 0.77771 1.04586 1.91498 1.93991 1.32337 1.94058 1.21052 0.99682 0.91648 1.01196 1.19489 0.92772 0.93825 0.99704 1.19921 0.94303 0.93645 0.86727 1.43966 1.40609 1.45109 1.06917 1.18444 0.86367 0.86953 0.90673 1.20594 1.09041 1.12169 0.97516 1.20580 0.95098 0.94405 0.95500 1.21525 1.08404 1.10001 0.94060 1.18192 0.85941 0.86594 0.92653 1.19605 1.16207 1.19836 0.91064 0.89925 1.26035 0.94341 0.94174 1.00757 1.70171 1.12321 1.18089 1.33031 0.86356 0.79147 0.79552 0.82217 1.18467 1.19991 1.20007 1.68198 1.23961 1.17250 1.15634 0.87332 0.89757 0.90021 0.84904 0.84584 0.83939 0.91679 0.91312 0.76786 0.89283 0.89012 0.88796 0.92067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.15 101.05 0.92 -0.48 16 2 S -0.06 -0.83 20.98 -107.50 -2.26 -3.09 16 3 C -0.08 -1.08 6.11 -39.06 -0.24 -1.32 16 4 C -0.11 -1.20 9.36 -39.37 -0.37 -1.56 16 5 C -0.13 -1.38 10.02 -39.54 -0.40 -1.78 16 6 C 0.09 1.06 7.30 -39.40 -0.29 0.77 16 7 F -0.14 -1.76 17.26 2.25 0.04 -1.72 16 8 C -0.11 -1.47 9.64 -39.54 -0.38 -1.85 16 9 C -0.05 -0.71 5.27 -104.41 -0.55 -1.26 16 10 C 0.18 2.88 4.36 -5.19 -0.02 2.85 16 11 N -0.73 -14.70 5.71 -61.57 -0.35 -15.05 16 12 C 0.42 10.15 7.65 -155.33 -1.19 8.97 16 13 C -0.37 -8.49 9.34 -38.86 -0.36 -8.86 16 14 C -0.03 -0.73 10.15 -39.39 -0.40 -1.13 16 15 C -0.32 -8.10 9.83 -38.65 -0.38 -8.48 16 16 C 0.29 8.23 6.55 -85.00 -0.56 7.68 16 17 C -0.43 -11.91 9.14 -37.74 -0.34 -12.25 16 18 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 19 C 0.07 1.86 5.50 -17.34 -0.10 1.76 16 20 N -0.71 -19.19 11.46 55.55 0.64 -18.55 16 21 Si 0.90 18.94 29.56 -169.99 -5.02 13.91 16 22 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 24 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 25 N -0.53 -14.69 7.89 -10.33 -0.08 -14.77 16 26 H 0.11 0.83 8.14 -51.92 -0.42 0.41 16 27 H 0.08 0.67 7.74 -51.92 -0.40 0.27 16 28 H 0.08 0.57 7.76 -51.92 -0.40 0.17 16 29 H 0.13 1.09 5.88 -52.49 -0.31 0.79 16 30 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 31 H 0.14 1.68 8.04 -52.49 -0.42 1.26 16 32 H 0.07 1.00 7.77 -51.93 -0.40 0.60 16 33 H 0.07 1.12 7.04 -51.93 -0.37 0.75 16 34 H 0.40 8.30 8.58 -40.82 -0.35 7.95 16 35 H 0.09 1.83 6.68 -52.49 -0.35 1.48 16 36 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 37 H 0.09 2.24 8.06 -52.49 -0.42 1.81 16 38 H 0.27 6.55 8.29 -40.82 -0.34 6.21 16 LS Contribution 341.48 15.07 5.15 5.15 Total: -1.00 -30.31 341.48 -10.78 -41.10 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -4.24 Total: 9.98 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -4.65 Total: -16.94 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: 0.20 Total: -48.38 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.02 Total: 13.91 kcal Atomic # 16 Polarization: -0.83 SS G_CDS: -2.26 Total: -3.09 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.31 -10.78 -41.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320363682.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.319 kcal (2) G-P(sol) polarization free energy of solvation -30.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds