Wall clock time and date at job start Tue Mar 31 2020 11:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76204 * 102.99881 * 2 1 4 4 C 1.38963 * 120.05258 * 359.72296 * 3 2 1 5 5 C 1.38084 * 119.93941 * 179.77024 * 4 3 2 6 6 C 1.38503 * 120.05338 * 0.50539 * 5 4 3 7 7 F 1.35101 * 119.94102 * 179.76753 * 6 5 4 8 8 C 1.38453 * 120.11266 * 359.74973 * 6 5 4 9 9 C 1.38122 * 120.05241 * 359.97438 * 8 6 5 10 10 C 1.50702 * 120.02453 * 179.97438 * 9 8 6 11 11 N 1.46503 * 109.46914 * 260.02434 * 10 9 8 12 12 C 1.38819 * 120.00026 * 180.02562 * 11 10 9 13 13 C 1.39799 * 119.58352 * 359.72088 * 12 11 10 14 14 C 1.38599 * 119.48964 * 179.79042 * 13 12 11 15 15 C 1.38391 * 118.68125 * 0.48127 * 14 13 12 16 16 C 1.40548 * 119.14772 * 359.74204 * 15 14 13 17 17 C 1.41317 * 119.78669 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99564 * 0.02562 * 17 16 15 19 19 C 1.40021 * 120.00418 * 180.02562 * 17 16 15 20 20 N 1.30752 * 119.99981 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00138 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47347 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47563 * 119.99529 * 21 19 17 24 24 H 1.48502 * 109.47098 * 239.99565 * 21 19 17 25 25 N 1.31956 * 119.58514 * 179.97438 * 12 11 10 26 26 H 1.09002 * 109.47124 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46975 * 60.00064 * 1 2 3 28 28 H 1.09004 * 109.47147 * 300.00027 * 1 2 3 29 29 H 1.07994 * 120.03147 * 0.02562 * 4 3 2 30 30 H 1.07999 * 119.96713 * 180.25462 * 5 4 3 31 31 H 1.07996 * 119.97136 * 180.02562 * 8 6 5 32 32 H 1.09005 * 109.47468 * 20.01800 * 10 9 8 33 33 H 1.08997 * 109.47337 * 140.01880 * 10 9 8 34 34 H 0.96996 * 119.99920 * 359.97438 * 11 10 9 35 35 H 1.07996 * 120.25938 * 359.97438 * 13 12 11 36 36 H 1.07996 * 120.65780 * 180.22146 * 14 13 12 37 37 H 1.07997 * 120.42589 * 179.77142 * 15 14 13 38 38 H 0.97001 * 119.99795 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1949 2.6655 -0.0058 5 6 1.5082 4.0104 -0.0010 6 6 2.8331 4.4140 -0.0010 7 9 3.1369 5.7304 -0.0010 8 6 3.8466 3.4707 -0.0005 9 6 3.5384 2.1243 0.0004 10 6 4.6420 1.0981 0.0003 11 7 4.8359 0.5896 -1.3599 12 6 5.8049 -0.3724 -1.6097 13 6 6.5950 -0.8457 -0.5579 14 6 7.5590 -1.8094 -0.8088 15 6 7.7171 -2.2691 -2.1045 16 6 6.8952 -1.7507 -3.1199 17 6 7.0448 -2.2110 -4.4476 18 1 7.7886 -2.9591 -4.6792 19 6 6.2288 -1.6973 -5.4629 20 7 5.3280 -0.7920 -5.1824 21 14 6.4270 -2.3052 -7.2180 22 1 7.5080 -3.3221 -7.2706 23 1 5.1526 -2.9127 -7.6785 24 1 6.7785 -1.1637 -8.1005 25 7 5.9722 -0.8250 -2.8379 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 0.1617 2.3513 -0.0099 30 1 0.7193 4.7480 -0.0014 31 1 4.8789 3.7880 -0.0001 32 1 5.5659 1.5580 0.3513 33 1 4.3724 0.2744 0.6612 34 1 4.2866 0.9247 -2.0857 35 1 6.4532 -0.4655 0.4429 36 1 8.1773 -2.1909 -0.0097 37 1 8.4622 -3.0170 -2.3323 38 1 4.7624 -0.4364 -5.8857 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320363682.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:57 Heat of formation + Delta-G solvation = 5.654066 kcal Electronic energy + Delta-G solvation = -23059.779098 eV Core-core repulsion = 19521.138117 eV Total energy + Delta-G solvation = -3538.640981 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.090 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.92938 -40.50113 -39.83524 -36.75905 -35.16431 -33.05720 -32.18357 -31.91104 -30.35978 -29.68134 -27.28942 -26.80696 -24.01499 -23.47892 -22.85723 -22.02418 -19.28274 -18.79371 -18.40731 -17.81183 -17.61876 -16.70335 -16.57386 -16.43245 -15.96220 -15.91635 -15.52321 -15.11502 -15.04054 -14.75240 -14.58210 -14.37648 -14.03809 -13.76272 -13.52759 -13.46697 -13.35587 -13.02628 -12.83202 -12.70498 -12.55473 -12.22095 -12.14815 -11.70130 -11.30964 -11.07521 -10.68745 -10.55258 -10.18096 -9.79969 -9.40579 -8.41602 -8.24367 -8.19553 -6.44773 -0.11925 0.03826 0.52717 1.08645 1.38440 1.42472 1.49720 1.57514 1.58827 2.24242 2.26847 2.87167 2.95733 3.15589 3.51412 3.65482 4.00698 4.08354 4.16419 4.27340 4.28561 4.38732 4.43747 4.45396 4.65755 4.71506 4.82465 4.84814 4.96911 5.01739 5.03331 5.03959 5.13491 5.23968 5.39184 5.71012 5.74668 5.99533 6.08999 6.25522 6.56743 6.85768 6.95029 7.24393 8.38050 8.54528 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.013019 B = 0.003544 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.152060 B = 7899.172318 C = 8020.902700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 S -0.138 6.138 3 C -0.082 4.082 4 C -0.106 4.106 5 C -0.118 4.118 6 C 0.076 3.924 7 F -0.143 7.143 8 C -0.121 4.121 9 C -0.069 4.069 10 C 0.184 3.816 11 N -0.720 5.720 12 C 0.401 3.599 13 C -0.367 4.367 14 C -0.029 4.029 15 C -0.344 4.344 16 C 0.261 3.739 17 C -0.472 4.472 18 H 0.085 0.915 19 C 0.027 3.973 20 N -0.751 5.751 21 Si 0.984 3.016 22 H -0.255 1.255 23 H -0.267 1.267 24 H -0.268 1.268 25 N -0.562 5.562 26 H 0.118 0.882 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.163 0.837 30 H 0.168 0.832 31 H 0.145 0.855 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.391 0.609 35 H 0.116 0.884 36 H 0.128 0.872 37 H 0.101 0.899 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.603 8.101 10.074 18.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S 0.107 5.893 3 C -0.196 4.196 4 C -0.130 4.130 5 C -0.139 4.139 6 C 0.054 3.946 7 F -0.122 7.122 8 C -0.141 4.141 9 C -0.076 4.076 10 C 0.060 3.940 11 N -0.355 5.355 12 C 0.160 3.840 13 C -0.393 4.393 14 C -0.053 4.053 15 C -0.367 4.367 16 C 0.133 3.867 17 C -0.504 4.504 18 H 0.103 0.897 19 C -0.194 4.194 20 N -0.373 5.373 21 Si 0.804 3.196 22 H -0.179 1.179 23 H -0.192 1.192 24 H -0.193 1.193 25 N -0.285 5.285 26 H 0.137 0.863 27 H 0.113 0.887 28 H 0.123 0.877 29 H 0.181 0.819 30 H 0.185 0.815 31 H 0.163 0.837 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.225 0.775 35 H 0.134 0.866 36 H 0.146 0.854 37 H 0.119 0.881 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.598 7.506 9.554 17.502 hybrid contribution -0.058 0.851 -0.288 0.901 sum -12.657 8.357 9.265 17.773 Atomic orbital electron populations 1.23866 0.92120 1.08422 1.06880 1.86574 1.09330 1.02176 1.91264 1.21885 0.95955 0.97780 1.03994 1.21319 0.99478 0.91489 1.00702 1.21350 0.94905 0.97192 1.00438 1.17743 0.94220 0.77492 1.05124 1.91492 1.94108 1.32461 1.94147 1.21095 1.00306 0.91491 1.01255 1.19275 0.92671 0.93545 1.02062 1.19975 0.95570 0.94184 0.84314 1.44086 1.39115 1.43832 1.08477 1.18867 0.87257 0.87506 0.90370 1.20933 1.08280 1.11632 0.98417 1.20986 0.95034 0.93678 0.95625 1.21678 1.09068 1.11115 0.94835 1.18663 0.86829 0.87350 0.93829 1.19947 1.17489 1.20990 0.91972 0.89674 1.26927 0.93464 0.93954 1.05096 1.70270 1.13109 1.19165 1.34765 0.85143 0.79333 0.79062 0.76016 1.17885 1.19159 1.19262 1.68174 1.24771 1.18137 1.17430 0.86349 0.88714 0.87728 0.81939 0.81465 0.83724 0.91147 0.91578 0.77528 0.86585 0.85384 0.88070 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.15 113.37 1.04 -1.09 16 2 S -0.14 -3.56 20.98 -56.49 -1.19 -4.74 16 3 C -0.08 -2.03 6.11 22.60 0.14 -1.89 16 4 C -0.11 -1.96 9.36 22.41 0.21 -1.75 16 5 C -0.12 -2.13 10.02 22.30 0.22 -1.90 16 6 C 0.08 1.72 7.30 22.38 0.16 1.88 16 7 F -0.14 -3.37 17.26 44.97 0.78 -2.59 16 8 C -0.12 -3.01 9.64 22.29 0.21 -2.80 16 9 C -0.07 -1.89 5.27 -19.73 -0.10 -1.99 16 10 C 0.18 5.91 4.36 85.63 0.37 6.29 16 11 N -0.72 -29.71 5.71 -348.70 -1.99 -31.71 16 12 C 0.40 20.02 7.65 133.42 1.02 21.04 16 13 C -0.37 -16.90 9.34 22.73 0.21 -16.68 16 14 C -0.03 -1.34 10.15 22.39 0.23 -1.12 16 15 C -0.34 -17.97 9.83 22.87 0.22 -17.74 16 16 C 0.26 15.17 6.55 40.17 0.26 15.43 16 17 C -0.47 -26.75 9.14 23.46 0.21 -26.53 16 18 H 0.09 4.55 7.85 -2.91 -0.02 4.53 16 19 C 0.03 1.44 5.50 85.29 0.47 1.90 16 20 N -0.75 -41.51 11.46 21.84 0.25 -41.26 16 21 Si 0.98 39.43 29.56 68.60 2.03 41.46 16 22 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 23 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 24 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 25 N -0.56 -32.37 7.89 -186.59 -1.47 -33.84 16 26 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.09 1.22 7.74 -2.39 -0.02 1.20 16 28 H 0.10 1.08 7.76 -2.39 -0.02 1.06 16 29 H 0.16 1.99 5.88 -2.91 -0.02 1.98 16 30 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 31 H 0.14 3.41 8.04 -2.91 -0.02 3.38 16 32 H 0.07 2.16 7.77 -2.38 -0.02 2.14 16 33 H 0.07 2.17 7.04 -2.39 -0.02 2.15 16 34 H 0.39 16.93 8.58 -92.71 -0.80 16.13 16 35 H 0.12 4.62 6.68 -2.91 -0.02 4.60 16 36 H 0.13 4.88 8.06 -2.91 -0.02 4.85 16 37 H 0.10 4.94 8.06 -2.91 -0.02 4.92 16 38 H 0.27 13.72 8.29 -92.71 -0.77 12.96 16 Total: -1.00 -68.23 341.48 3.60 -64.63 By element: Atomic # 1 Polarization: 34.70 SS G_CDS: 0.31 Total: 35.01 kcal Atomic # 6 Polarization: -31.84 SS G_CDS: 4.89 Total: -26.95 kcal Atomic # 7 Polarization: -103.60 SS G_CDS: -3.21 Total: -106.81 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.78 Total: -2.59 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.46 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.19 Total: -4.74 kcal Total: -68.23 3.60 -64.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320363682.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.282 kcal (2) G-P(sol) polarization free energy of solvation -68.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds