Wall clock time and date at job start Tue Mar 31 2020 12:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39948 * 119.95187 * 2 1 4 4 C 1.35769 * 119.35020 * 179.97438 * 3 2 1 5 5 C 1.50694 * 120.42502 * 180.02562 * 4 3 2 6 6 N 1.36305 * 119.15395 * 0.02768 * 4 3 2 7 7 N 1.39906 * 132.13767 * 179.97438 * 6 4 3 8 8 C 1.30664 * 109.54609 * 180.02562 * 7 6 4 9 9 C 1.40724 * 108.71917 * 0.02562 * 8 7 6 10 10 C 1.46393 * 126.55697 * 180.02562 * 9 8 7 11 11 O 1.21644 * 119.99882 * 180.02562 * 10 9 8 12 12 O 1.34884 * 119.99981 * 0.02765 * 10 9 8 13 13 C 1.45198 * 117.00205 * 179.97438 * 12 10 9 14 14 C 1.50701 * 109.47536 * 180.02562 * 13 12 10 15 15 O 1.21293 * 119.99717 * 0.02562 * 14 13 12 16 16 N 1.34772 * 120.00165 * 180.02562 * 14 13 12 17 17 C 1.37105 * 119.99826 * 180.02562 * 16 14 13 18 18 H 1.07993 * 119.99980 * 359.97438 * 17 16 14 19 19 C 1.38950 * 119.99904 * 179.97438 * 17 16 14 20 20 N 1.31413 * 120.00081 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00072 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47252 * 90.00196 * 21 19 17 23 23 H 1.48502 * 109.47128 * 210.00417 * 21 19 17 24 24 H 1.48503 * 109.47257 * 329.99925 * 21 19 17 25 25 C 1.36562 * 119.73268 * 359.97438 * 6 4 3 26 26 N 1.31520 * 119.94932 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.46871 * 270.02399 * 1 2 3 28 28 H 1.09001 * 109.46855 * 30.02546 * 1 2 3 29 29 H 1.09000 * 109.47216 * 150.01787 * 1 2 3 30 30 H 1.07998 * 120.32503 * 359.97438 * 3 2 1 31 31 H 1.09001 * 109.47173 * 270.01247 * 5 4 3 32 32 H 1.09004 * 109.47044 * 30.00080 * 5 4 3 33 33 H 1.08992 * 109.47516 * 150.00527 * 5 4 3 34 34 H 1.08009 * 125.64153 * 179.73645 * 8 7 6 35 35 H 1.09002 * 109.47310 * 300.00054 * 13 12 10 36 36 H 1.09003 * 109.47020 * 60.00290 * 13 12 10 37 37 H 0.96997 * 119.99940 * 359.97438 * 16 14 13 38 38 H 0.97001 * 120.00483 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2058 1.2126 0.0000 4 6 3.5634 1.1983 0.0005 5 6 4.3401 2.4897 0.0011 6 7 4.2149 0.0010 0.0005 7 7 5.5748 -0.3276 0.0005 8 6 5.7105 -1.6272 -0.0002 9 6 4.4318 -2.2148 -0.0012 10 6 4.1305 -3.6473 -0.0016 11 8 2.9744 -4.0257 -0.0029 12 8 5.1348 -4.5477 -0.0004 13 6 4.7621 -5.9511 -0.0003 14 6 6.0062 -6.8014 0.0018 15 8 7.0996 -6.2763 0.0035 16 7 5.9041 -8.1452 0.0017 17 6 7.0360 -8.9188 0.0041 18 1 8.0095 -8.4512 0.0056 19 6 6.9307 -10.3043 0.0045 20 7 5.7461 -10.8732 0.0032 21 14 8.4729 -11.3582 0.0070 22 1 8.8797 -11.6370 1.4077 23 1 8.1985 -12.6389 -0.6929 24 1 9.5667 -10.6368 -0.6919 25 6 3.4970 -1.1607 0.0004 26 7 2.1636 -1.1396 0.0005 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8901 -0.5135 30 1 1.6703 2.1505 -0.0004 31 1 4.5276 2.8014 -1.0264 32 1 3.7645 3.2596 0.5149 33 1 5.2898 2.3422 0.5152 34 1 6.6488 -2.1620 -0.0043 35 1 4.1713 -6.1701 0.8892 36 1 4.1730 -6.1706 -0.8908 37 1 5.0297 -8.5651 0.0007 38 1 5.6725 -11.8404 0.0031 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321639636.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:11 Heat of formation + Delta-G solvation = -30.971644 kcal Electronic energy + Delta-G solvation = -25094.763052 eV Core-core repulsion = 21131.700952 eV Total energy + Delta-G solvation = -3963.062100 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.71597 -41.32443 -39.98869 -39.47713 -37.33116 -36.19059 -36.01211 -33.43855 -33.39691 -31.80669 -30.20807 -29.52854 -28.68040 -26.70387 -25.14782 -24.06772 -22.94016 -21.53593 -21.34204 -20.05888 -19.62810 -18.76458 -18.14623 -17.84428 -17.60538 -17.30709 -17.19103 -16.46531 -15.98766 -15.72099 -15.62997 -15.06511 -14.80188 -14.77221 -14.57068 -14.36002 -13.94225 -13.84824 -13.70186 -13.55041 -13.32823 -13.06782 -12.92898 -12.85814 -12.76132 -12.46658 -12.11151 -11.96444 -11.80838 -11.57355 -11.56549 -10.94363 -10.62050 -10.49994 -10.11162 -9.29749 -8.51306 -6.02108 -0.79063 -0.38299 0.68013 0.72579 1.36652 1.40283 1.48579 1.59677 1.78714 1.87965 2.27805 2.30825 2.56212 2.78429 3.12256 3.13958 3.17150 3.58729 3.79905 3.88579 3.99112 4.08035 4.17581 4.22752 4.28272 4.35701 4.41129 4.56879 4.72785 4.80002 4.82007 4.95409 5.12122 5.26673 5.30071 5.37087 5.38844 5.89850 6.04782 6.47275 6.49968 6.77371 7.03351 7.40377 7.93720 8.65980 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.030613 B = 0.002358 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.430446 B =11872.314774 C =12760.994159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.216 3.784 3 C -0.204 4.204 4 C 0.186 3.814 5 C -0.115 4.115 6 N -0.312 5.312 7 N -0.321 5.321 8 C 0.162 3.838 9 C -0.326 4.326 10 C 0.542 3.458 11 O -0.536 6.536 12 O -0.339 6.339 13 C 0.074 3.926 14 C 0.440 3.560 15 O -0.614 6.614 16 N -0.558 5.558 17 C -0.337 4.337 18 H 0.085 0.915 19 C -0.011 4.011 20 N -0.917 5.917 21 Si 1.000 3.000 22 H -0.269 1.269 23 H -0.269 1.269 24 H -0.270 1.270 25 C 0.332 3.668 26 N -0.509 5.509 27 H 0.109 0.891 28 H 0.130 0.870 29 H 0.073 0.927 30 H 0.230 0.770 31 H 0.110 0.890 32 H 0.137 0.863 33 H 0.076 0.924 34 H 0.226 0.774 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.400 0.600 38 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.164 30.295 0.016 32.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.059 3.941 3 C -0.226 4.226 4 C 0.070 3.930 5 C -0.172 4.172 6 N -0.080 5.080 7 N -0.141 5.141 8 C -0.020 4.020 9 C -0.341 4.341 10 C 0.389 3.611 11 O -0.427 6.427 12 O -0.254 6.254 13 C -0.003 4.003 14 C 0.227 3.773 15 O -0.501 6.501 16 N -0.196 5.196 17 C -0.466 4.466 18 H 0.103 0.897 19 C -0.211 4.211 20 N -0.557 5.557 21 Si 0.823 3.177 22 H -0.194 1.194 23 H -0.194 1.194 24 H -0.195 1.195 25 C 0.096 3.904 26 N -0.225 5.225 27 H 0.127 0.873 28 H 0.148 0.852 29 H 0.092 0.908 30 H 0.246 0.754 31 H 0.128 0.872 32 H 0.156 0.844 33 H 0.095 0.905 34 H 0.242 0.758 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.234 0.766 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.413 30.509 0.012 32.574 hybrid contribution 0.258 -1.660 0.006 1.680 sum -11.155 28.849 0.018 30.931 Atomic orbital electron populations 1.21096 0.83736 1.06064 1.05639 1.23047 1.00126 0.87061 0.83820 1.22282 0.90664 1.02573 1.07110 1.21920 0.93282 0.86200 0.91576 1.21221 1.00583 0.89259 1.06125 1.47263 1.07409 1.06655 1.46694 1.77512 0.89252 1.15289 1.32064 1.24565 0.98600 0.90203 0.88667 1.18257 0.92868 0.88982 1.33995 1.19837 0.82636 0.86110 0.72505 1.90833 1.21840 1.81343 1.48683 1.86574 1.37716 1.16586 1.84535 1.22476 0.95327 0.77412 1.05080 1.20007 0.90127 0.83140 0.84052 1.90509 1.29814 1.73133 1.56639 1.41736 1.09854 1.03858 1.64139 1.19741 0.87566 0.88709 1.50592 0.89659 1.26168 1.01681 0.97609 0.95681 1.69684 1.24361 1.12371 1.49258 0.84825 0.76957 0.77113 0.78810 1.19403 1.19391 1.19476 1.20231 0.88500 0.86601 0.95031 1.68243 1.03106 1.31291 1.19817 0.87273 0.85204 0.90820 0.75369 0.87186 0.84432 0.90466 0.75782 0.87932 0.87925 0.76603 0.90971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.19 71.24 0.73 -0.02 16 2 C 0.22 3.34 6.83 43.02 0.29 3.64 16 3 C -0.20 -1.64 9.38 22.11 0.21 -1.43 16 4 C 0.19 2.51 6.85 41.29 0.28 2.79 16 5 C -0.12 -0.57 10.08 71.23 0.72 0.15 16 6 N -0.31 -7.64 3.86 -180.03 -0.69 -8.34 16 7 N -0.32 -8.67 12.38 -56.54 -0.70 -9.37 16 8 C 0.16 4.84 11.79 85.47 1.01 5.85 16 9 C -0.33 -11.50 6.17 -19.90 -0.12 -11.63 16 10 C 0.54 22.07 7.92 69.94 0.55 22.63 16 11 O -0.54 -23.59 16.53 19.37 0.32 -23.27 16 12 O -0.34 -14.57 9.60 -51.59 -0.50 -15.07 16 13 C 0.07 3.17 5.96 71.24 0.42 3.59 16 14 C 0.44 22.85 7.86 87.66 0.69 23.54 16 15 O -0.61 -36.34 16.08 15.73 0.25 -36.09 16 16 N -0.56 -30.05 5.29 -306.99 -1.62 -31.67 16 17 C -0.34 -19.53 9.68 84.04 0.81 -18.72 16 18 H 0.09 5.21 7.16 -2.91 -0.02 5.18 16 19 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 20 N -0.92 -50.15 13.05 21.66 0.28 -49.87 16 21 Si 1.00 43.16 29.55 68.60 2.03 45.19 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 23 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 C 0.33 10.31 7.74 134.02 1.04 11.35 16 26 N -0.51 -14.35 10.18 -179.98 -1.83 -16.18 16 27 H 0.11 0.49 8.14 -2.39 -0.02 0.48 16 28 H 0.13 -0.19 8.09 -2.39 -0.02 -0.21 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.23 -0.96 8.06 -2.91 -0.02 -0.98 16 31 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.14 -0.42 8.09 -2.38 -0.02 -0.44 16 33 H 0.08 0.69 8.10 -2.39 -0.02 0.67 16 34 H 0.23 5.90 8.06 -2.91 -0.02 5.88 16 35 H 0.10 4.00 8.14 -2.39 -0.02 3.98 16 36 H 0.10 4.00 8.14 -2.39 -0.02 3.98 16 37 H 0.40 20.36 7.90 -92.71 -0.73 19.63 16 38 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -87.02 348.26 5.03 -81.99 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 0.40 Total: 21.07 kcal Atomic # 6 Polarization: 34.52 SS G_CDS: 7.10 Total: 41.61 kcal Atomic # 7 Polarization: -110.85 SS G_CDS: -4.57 Total: -115.42 kcal Atomic # 8 Polarization: -74.51 SS G_CDS: 0.08 Total: -74.43 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -87.02 5.03 -81.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321639636.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.016 kcal (2) G-P(sol) polarization free energy of solvation -87.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds