Wall clock time and date at job start Tue Mar 31 2020 11:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47188 * 2 1 4 4 C 1.50702 * 109.46907 * 239.99865 * 2 1 3 5 5 H 1.07994 * 120.00309 * 245.34775 * 4 2 1 6 6 C 1.37881 * 119.99677 * 65.34923 * 4 2 1 7 7 N 1.31515 * 119.99680 * 185.69071 * 6 4 2 8 8 Si 1.86798 * 120.00332 * 5.96523 * 6 4 2 9 9 H 1.48500 * 109.47105 * 269.72913 * 8 6 4 10 10 H 1.48501 * 109.47030 * 29.72402 * 8 6 4 11 11 H 1.48495 * 109.47102 * 149.72671 * 8 6 4 12 12 N 1.46504 * 109.47206 * 120.00213 * 2 1 3 13 13 C 1.34776 * 119.99875 * 274.99404 * 12 2 1 14 14 O 1.21359 * 120.00042 * 0.02562 * 13 12 2 15 15 C 1.49357 * 119.99909 * 179.97438 * 13 12 2 16 16 O 1.21380 * 119.99657 * 0.02562 * 15 13 12 17 17 N 1.34774 * 119.99896 * 180.02562 * 15 13 12 18 18 C 1.39758 * 119.99961 * 184.65412 * 17 15 13 19 19 C 1.39059 * 119.92464 * 144.00524 * 18 17 15 20 20 C 1.38325 * 120.14287 * 179.97438 * 19 18 17 21 21 C 1.37618 * 120.05767 * 0.02562 * 20 19 18 22 22 C 1.39794 * 120.42824 * 0.02562 * 21 20 19 23 23 C 1.38657 * 119.91937 * 323.73318 * 18 17 15 24 24 C 1.47462 * 108.03685 * 179.97438 * 22 21 20 25 25 O 1.21473 * 124.89390 * 179.97438 * 24 22 21 26 26 O 1.34331 * 110.20680 * 359.97438 * 24 22 21 27 27 C 1.45380 * 109.02924 * 0.02562 * 26 24 22 28 28 H 1.08994 * 109.46755 * 54.85749 * 1 2 3 29 29 H 1.08997 * 109.47217 * 174.86423 * 1 2 3 30 30 H 1.09000 * 109.46360 * 294.86092 * 1 2 3 31 31 H 0.96998 * 120.00183 * 355.25276 * 7 6 4 32 32 H 0.96996 * 119.99832 * 95.00073 * 12 2 1 33 33 H 0.96998 * 120.00184 * 4.64957 * 17 15 13 34 34 H 1.07998 * 119.92356 * 359.97438 * 19 18 17 35 35 H 1.08003 * 119.97026 * 180.02562 * 20 19 18 36 36 H 1.07998 * 120.13740 * 0.02562 * 23 18 17 37 37 H 1.09009 * 110.06227 * 240.75817 * 27 26 24 38 38 H 1.08991 * 110.07402 * 119.23630 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.5801 -1.6361 -1.1338 6 6 1.7925 -0.1785 -2.4797 7 7 2.1313 -0.8521 -3.5573 8 14 0.9933 1.5021 -2.6417 9 1 -0.4819 1.3447 -2.7050 10 1 1.3521 2.3361 -1.4665 11 1 1.4745 2.1615 -3.8822 12 7 2.0184 -0.6907 1.1962 13 6 2.1472 -0.0183 2.3571 14 8 1.8582 1.1591 2.4117 15 6 2.6445 -0.7226 3.5767 16 8 2.9331 -1.9003 3.5221 17 7 2.7729 -0.0503 4.7378 18 6 3.3292 -0.6823 5.8533 19 6 4.1327 0.0385 6.7300 20 6 4.6851 -0.5823 7.8358 21 6 4.4413 -1.9161 8.0711 22 6 3.6364 -2.6535 7.1977 23 6 3.0740 -2.0251 6.0863 24 6 3.5601 -4.0361 7.7047 25 8 2.9373 -4.9361 7.1776 26 8 4.2786 -4.1569 8.8332 27 6 4.8780 -2.8717 9.1533 28 1 -0.3632 0.5915 -0.8403 29 1 -0.3633 -1.0235 -0.0920 30 1 -0.3632 0.4321 0.9325 31 1 2.6115 -1.6908 -3.4740 32 1 2.2491 -1.6318 1.1525 33 1 2.4792 0.8721 4.7992 34 1 4.3257 1.0852 6.5471 35 1 5.3084 -0.0197 8.5152 36 1 2.4467 -2.5836 5.4074 37 1 5.9647 -2.9573 9.1603 38 1 4.5235 -2.5250 10.1239 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323513794.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:28 Heat of formation + Delta-G solvation = -105.764537 kcal Electronic energy + Delta-G solvation = -25391.212551 eV Core-core repulsion = 21392.614437 eV Total energy + Delta-G solvation = -3998.598115 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.99003 -40.87878 -39.10238 -38.11237 -37.56763 -35.66431 -34.88353 -32.55204 -31.71004 -31.21346 -30.00786 -27.57362 -25.51555 -24.97894 -24.34609 -22.32721 -21.39028 -20.85142 -19.87246 -19.11818 -18.25485 -17.53853 -17.18910 -17.11474 -16.88511 -16.15185 -15.88693 -15.44368 -15.25163 -14.89657 -14.33665 -14.14432 -14.05793 -14.04868 -13.64039 -13.32077 -13.19261 -12.86136 -12.61549 -12.35218 -12.29860 -11.90976 -11.60078 -11.50969 -11.38471 -10.78164 -10.66035 -10.49946 -10.19476 -9.88735 -9.64010 -9.39091 -9.00968 -8.69150 -8.65749 -8.48488 -6.64777 -4.33774 0.09333 0.64641 1.50351 2.10240 2.30215 2.67901 3.14856 3.27645 3.29002 3.37469 3.42862 3.50621 3.65783 3.81654 4.25900 4.33129 4.54774 4.62610 4.63603 4.75210 4.85278 4.95063 5.12355 5.25570 5.48408 5.58863 5.73540 5.79141 6.19831 6.21709 6.26597 6.35158 6.43653 6.66971 6.73684 6.97948 7.10974 7.13036 7.39793 7.57244 8.06799 8.18406 8.36294 8.68694 9.37748 10.76560 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.026963 B = 0.002614 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.223116 B =10710.109890 C =11317.392530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.233 3.767 3 H 0.054 0.946 4 C -0.615 4.615 5 H 0.066 0.934 6 C 0.037 3.963 7 N -0.900 5.900 8 Si 1.051 2.949 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.659 5.659 13 C 0.497 3.503 14 O -0.535 6.535 15 C 0.509 3.491 16 O -0.497 6.497 17 N -0.652 5.652 18 C 0.145 3.855 19 C -0.101 4.101 20 C -0.078 4.078 21 C -0.122 4.122 22 C -0.175 4.175 23 C -0.037 4.037 24 C 0.523 3.477 25 O -0.444 6.444 26 O -0.320 6.320 27 C 0.095 3.905 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.035 0.965 31 H 0.270 0.730 32 H 0.407 0.593 33 H 0.427 0.573 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.154 0.846 37 H 0.117 0.883 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.304 3.242 26.520 27.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.131 3.869 3 H 0.072 0.928 4 C -0.653 4.653 5 H 0.084 0.916 6 C -0.169 4.169 7 N -0.533 5.533 8 Si 0.879 3.121 9 H -0.206 1.206 10 H -0.200 1.200 11 H -0.212 1.212 12 N -0.308 5.308 13 C 0.276 3.724 14 O -0.414 6.414 15 C 0.291 3.709 16 O -0.369 6.369 17 N -0.300 5.300 18 C 0.050 3.950 19 C -0.121 4.121 20 C -0.096 4.096 21 C -0.123 4.123 22 C -0.178 4.178 23 C -0.057 4.057 24 C 0.364 3.636 25 O -0.328 6.328 26 O -0.235 6.235 27 C 0.021 3.979 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.081 0.919 32 H 0.243 0.757 33 H 0.266 0.734 34 H 0.163 0.837 35 H 0.160 0.840 36 H 0.171 0.829 37 H 0.135 0.865 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 4.446 3.687 25.137 25.792 hybrid contribution 0.627 -1.055 1.018 1.595 sum 5.073 2.631 26.156 26.773 Atomic orbital electron populations 1.22419 0.98456 1.01431 0.99583 1.19463 0.90845 0.94869 0.81769 0.92796 1.22144 1.41302 1.11042 0.90778 0.91635 1.25729 0.96048 1.03687 0.91458 1.70817 1.36092 1.16268 1.30151 0.83917 0.76555 0.75355 0.76232 1.20646 1.19970 1.21220 1.46260 1.61009 1.14770 1.08719 1.19613 0.81106 0.87257 0.84465 1.90732 1.50846 1.15087 1.84693 1.20983 0.78049 0.87153 0.84671 1.90787 1.46223 1.15129 1.84789 1.43204 1.60727 1.17731 1.08317 1.17617 0.96255 0.92470 0.88620 1.21226 0.95218 1.01095 0.94588 1.20014 1.00096 0.91950 0.97550 1.20821 0.99127 0.95254 0.97095 1.20631 1.03462 0.95294 0.98387 1.20994 0.96855 0.93332 0.94538 1.20440 0.76838 0.87516 0.78807 1.90926 1.38169 1.46295 1.57450 1.87244 1.61170 1.33937 1.41186 1.22381 0.99747 0.78326 0.97452 0.92600 0.92673 0.94635 0.91927 0.75729 0.73392 0.83749 0.84029 0.82876 0.86517 0.86500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.42 9.08 37.16 0.34 -3.08 16 2 C 0.23 5.39 2.14 -69.08 -0.15 5.24 16 3 H 0.05 1.33 6.06 -51.93 -0.31 1.01 16 4 C -0.61 -16.35 9.09 -34.44 -0.31 -16.67 16 5 H 0.07 1.85 7.95 -52.49 -0.42 1.43 16 6 C 0.04 1.03 5.43 -17.82 -0.10 0.93 16 7 N -0.90 -26.59 13.70 55.43 0.76 -25.83 16 8 Si 1.05 24.44 25.33 -169.99 -4.31 20.14 16 9 H -0.28 -6.14 6.81 56.52 0.38 -5.76 16 10 H -0.27 -6.05 6.35 56.52 0.36 -5.69 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 N -0.66 -13.26 5.06 -55.39 -0.28 -13.54 16 13 C 0.50 9.00 7.85 -11.63 -0.09 8.90 16 14 O -0.53 -10.39 16.14 5.49 0.09 -10.31 16 15 C 0.51 7.78 7.72 -11.63 -0.09 7.69 16 16 O -0.50 -8.54 13.97 5.47 0.08 -8.47 16 17 N -0.65 -7.51 5.31 -10.32 -0.05 -7.56 16 18 C 0.15 1.53 6.27 -83.78 -0.53 1.00 16 19 C -0.10 -0.71 9.97 -39.24 -0.39 -1.10 16 20 C -0.08 -0.44 10.02 -39.78 -0.40 -0.84 16 21 C -0.12 -0.90 6.38 -104.20 -0.67 -1.56 16 22 C -0.18 -1.96 6.27 -105.08 -0.66 -2.62 16 23 C -0.04 -0.46 8.74 -38.95 -0.34 -0.80 16 24 C 0.52 6.74 8.58 34.49 0.30 7.04 16 25 O -0.44 -7.40 18.04 -18.92 -0.34 -7.74 16 26 O -0.32 -3.23 11.13 -39.15 -0.44 -3.66 16 27 C 0.10 0.50 7.93 36.07 0.29 0.79 16 28 H 0.06 1.19 4.46 -51.93 -0.23 0.96 16 29 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.27 7.94 8.72 -40.82 -0.36 7.59 16 32 H 0.41 7.90 8.00 -40.82 -0.33 7.57 16 33 H 0.43 4.03 8.30 -40.82 -0.34 3.70 16 34 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 35 H 0.14 0.31 8.06 -52.48 -0.42 -0.11 16 36 H 0.15 2.24 6.30 -52.49 -0.33 1.91 16 37 H 0.12 0.33 8.14 -51.92 -0.42 -0.10 16 38 H 0.12 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 332.87 15.07 5.02 5.02 Total: -1.00 -33.73 332.87 -5.98 -39.71 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -3.71 Total: 7.33 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -2.80 Total: 4.92 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: 0.42 Total: -46.93 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.61 Total: -30.18 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -4.31 Total: 20.14 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.73 -5.98 -39.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323513794.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.051 kcal (2) G-P(sol) polarization free energy of solvation -33.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds