Wall clock time and date at job start Tue Mar 31 2020 11:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47188 * 2 1 4 4 C 1.50702 * 109.46907 * 239.99865 * 2 1 3 5 5 H 1.07994 * 120.00309 * 245.34775 * 4 2 1 6 6 C 1.37881 * 119.99677 * 65.34923 * 4 2 1 7 7 N 1.31515 * 119.99680 * 185.69071 * 6 4 2 8 8 Si 1.86798 * 120.00332 * 5.96523 * 6 4 2 9 9 H 1.48500 * 109.47105 * 269.72913 * 8 6 4 10 10 H 1.48501 * 109.47030 * 29.72402 * 8 6 4 11 11 H 1.48495 * 109.47102 * 149.72671 * 8 6 4 12 12 N 1.46504 * 109.47206 * 120.00213 * 2 1 3 13 13 C 1.34776 * 119.99875 * 274.99404 * 12 2 1 14 14 O 1.21359 * 120.00042 * 0.02562 * 13 12 2 15 15 C 1.49357 * 119.99909 * 179.97438 * 13 12 2 16 16 O 1.21380 * 119.99657 * 0.02562 * 15 13 12 17 17 N 1.34774 * 119.99896 * 180.02562 * 15 13 12 18 18 C 1.39758 * 119.99961 * 184.65412 * 17 15 13 19 19 C 1.39059 * 119.92464 * 144.00524 * 18 17 15 20 20 C 1.38325 * 120.14287 * 179.97438 * 19 18 17 21 21 C 1.37618 * 120.05767 * 0.02562 * 20 19 18 22 22 C 1.39794 * 120.42824 * 0.02562 * 21 20 19 23 23 C 1.38657 * 119.91937 * 323.73318 * 18 17 15 24 24 C 1.47462 * 108.03685 * 179.97438 * 22 21 20 25 25 O 1.21473 * 124.89390 * 179.97438 * 24 22 21 26 26 O 1.34331 * 110.20680 * 359.97438 * 24 22 21 27 27 C 1.45380 * 109.02924 * 0.02562 * 26 24 22 28 28 H 1.08994 * 109.46755 * 54.85749 * 1 2 3 29 29 H 1.08997 * 109.47217 * 174.86423 * 1 2 3 30 30 H 1.09000 * 109.46360 * 294.86092 * 1 2 3 31 31 H 0.96998 * 120.00183 * 355.25276 * 7 6 4 32 32 H 0.96996 * 119.99832 * 95.00073 * 12 2 1 33 33 H 0.96998 * 120.00184 * 4.64957 * 17 15 13 34 34 H 1.07998 * 119.92356 * 359.97438 * 19 18 17 35 35 H 1.08003 * 119.97026 * 180.02562 * 20 19 18 36 36 H 1.07998 * 120.13740 * 0.02562 * 23 18 17 37 37 H 1.09009 * 110.06227 * 240.75817 * 27 26 24 38 38 H 1.08991 * 110.07402 * 119.23630 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.5801 -1.6361 -1.1338 6 6 1.7925 -0.1785 -2.4797 7 7 2.1313 -0.8521 -3.5573 8 14 0.9933 1.5021 -2.6417 9 1 -0.4819 1.3447 -2.7050 10 1 1.3521 2.3361 -1.4665 11 1 1.4745 2.1615 -3.8822 12 7 2.0184 -0.6907 1.1962 13 6 2.1472 -0.0183 2.3571 14 8 1.8582 1.1591 2.4117 15 6 2.6445 -0.7226 3.5767 16 8 2.9331 -1.9003 3.5221 17 7 2.7729 -0.0503 4.7378 18 6 3.3292 -0.6823 5.8533 19 6 4.1327 0.0385 6.7300 20 6 4.6851 -0.5823 7.8358 21 6 4.4413 -1.9161 8.0711 22 6 3.6364 -2.6535 7.1977 23 6 3.0740 -2.0251 6.0863 24 6 3.5601 -4.0361 7.7047 25 8 2.9373 -4.9361 7.1776 26 8 4.2786 -4.1569 8.8332 27 6 4.8780 -2.8717 9.1533 28 1 -0.3632 0.5915 -0.8403 29 1 -0.3633 -1.0235 -0.0920 30 1 -0.3632 0.4321 0.9325 31 1 2.6115 -1.6908 -3.4740 32 1 2.2491 -1.6318 1.1525 33 1 2.4792 0.8721 4.7992 34 1 4.3257 1.0852 6.5471 35 1 5.3084 -0.0197 8.5152 36 1 2.4467 -2.5836 5.4074 37 1 5.9647 -2.9573 9.1603 38 1 4.5235 -2.5250 10.1239 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323513794.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:27 Heat of formation + Delta-G solvation = -132.091590 kcal Electronic energy + Delta-G solvation = -25392.354178 eV Core-core repulsion = 21392.614437 eV Total energy + Delta-G solvation = -3999.739741 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.78374 -42.04861 -40.33144 -39.20496 -38.53463 -37.20925 -36.06745 -34.51856 -32.39820 -32.04612 -31.71822 -28.30352 -27.01877 -26.47028 -25.33057 -23.31384 -22.34849 -22.10345 -21.40206 -20.47161 -19.51874 -18.92529 -18.21498 -17.99062 -17.88833 -17.27424 -17.18978 -16.68941 -16.17426 -15.91498 -15.75721 -15.23343 -15.08604 -14.81263 -14.78891 -14.72240 -14.60302 -14.32622 -14.00022 -13.61789 -13.43827 -13.26686 -13.13836 -12.66802 -12.48817 -12.27273 -11.99840 -11.68236 -11.64791 -11.37234 -11.02351 -10.82857 -10.73325 -10.27203 -10.21241 -9.45977 -8.84850 -6.54340 -0.65004 -0.18758 0.35132 1.11885 1.27560 1.43379 1.53140 1.69474 1.92811 1.98717 2.40829 2.46196 2.50576 2.72667 3.00119 3.05279 3.30588 3.67402 3.90587 4.09229 4.16482 4.36963 4.38959 4.47223 4.57534 4.58854 4.63809 4.81853 4.91335 4.92093 5.04225 5.08897 5.23640 5.36454 5.45946 5.48087 5.63032 5.79473 5.92658 6.20947 6.34797 6.41761 6.59057 6.86907 7.25776 8.55539 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.026963 B = 0.002614 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.223116 B =10710.109890 C =11317.392530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.237 3.763 3 H 0.046 0.954 4 C -0.613 4.613 5 H 0.035 0.965 6 C -0.011 4.011 7 N -0.932 5.932 8 Si 1.085 2.915 9 H -0.256 1.256 10 H -0.254 1.254 11 H -0.287 1.287 12 N -0.671 5.671 13 C 0.502 3.498 14 O -0.544 6.544 15 C 0.515 3.485 16 O -0.524 6.524 17 N -0.630 5.630 18 C 0.118 3.882 19 C -0.077 4.077 20 C -0.061 4.061 21 C -0.096 4.096 22 C -0.209 4.209 23 C -0.061 4.061 24 C 0.519 3.481 25 O -0.506 6.506 26 O -0.329 6.329 27 C 0.088 3.912 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.256 0.744 32 H 0.408 0.592 33 H 0.438 0.562 34 H 0.181 0.819 35 H 0.196 0.804 36 H 0.115 0.885 37 H 0.154 0.846 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.499 6.569 30.320 31.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.133 3.867 3 H 0.064 0.936 4 C -0.651 4.651 5 H 0.053 0.947 6 C -0.210 4.210 7 N -0.567 5.567 8 Si 0.907 3.093 9 H -0.181 1.181 10 H -0.179 1.179 11 H -0.213 1.213 12 N -0.320 5.320 13 C 0.282 3.718 14 O -0.423 6.423 15 C 0.297 3.703 16 O -0.399 6.399 17 N -0.278 5.278 18 C 0.024 3.976 19 C -0.097 4.097 20 C -0.079 4.079 21 C -0.097 4.097 22 C -0.212 4.212 23 C -0.082 4.082 24 C 0.364 3.636 25 O -0.395 6.395 26 O -0.244 6.244 27 C 0.016 3.984 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.243 0.757 33 H 0.280 0.720 34 H 0.199 0.801 35 H 0.213 0.787 36 H 0.133 0.867 37 H 0.171 0.829 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 5.666 7.046 29.032 30.407 hybrid contribution 0.410 -2.082 0.069 2.123 sum 6.076 4.964 29.100 30.139 Atomic orbital electron populations 1.22321 0.96696 1.01678 1.00713 1.19188 0.92095 0.93875 0.81516 0.93630 1.22323 1.40208 1.09951 0.92662 0.94678 1.27090 0.96199 1.06463 0.91294 1.70934 1.38124 1.16404 1.31279 0.83520 0.77290 0.71666 0.76867 1.18077 1.17860 1.21338 1.46111 1.62064 1.14846 1.08946 1.19955 0.80137 0.87031 0.84710 1.90711 1.50999 1.15501 1.85069 1.20339 0.78413 0.86657 0.84898 1.90805 1.47847 1.16062 1.85146 1.42961 1.59681 1.17830 1.07363 1.17788 0.98454 0.92091 0.89263 1.21713 0.92454 1.02396 0.93145 1.20605 0.99068 0.91042 0.97214 1.21239 0.96531 0.95976 0.95951 1.20547 1.06001 0.94953 0.99656 1.20804 0.97840 0.94461 0.95074 1.20816 0.76029 0.87744 0.79030 1.90874 1.41070 1.48106 1.59452 1.87207 1.60505 1.36967 1.39728 1.23004 1.01598 0.75693 0.98086 0.92346 0.92802 0.92690 0.93466 0.75674 0.72038 0.80130 0.78679 0.86690 0.82895 0.82392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.46 9.08 71.98 0.65 -5.81 16 2 C 0.24 10.95 2.14 44.25 0.09 11.04 16 3 H 0.05 2.20 6.06 -2.39 -0.01 2.19 16 4 C -0.61 -33.52 9.09 25.60 0.23 -33.29 16 5 H 0.03 2.08 7.95 -2.91 -0.02 2.06 16 6 C -0.01 -0.61 5.43 84.66 0.46 -0.15 16 7 N -0.93 -56.75 13.70 21.45 0.29 -56.46 16 8 Si 1.09 48.50 25.33 68.60 1.74 50.23 16 9 H -0.26 -10.41 6.81 99.48 0.68 -9.74 16 10 H -0.25 -10.48 6.35 99.48 0.63 -9.84 16 11 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 12 N -0.67 -27.45 5.06 -447.51 -2.27 -29.72 16 13 C 0.50 18.08 7.85 87.24 0.68 18.76 16 14 O -0.54 -20.43 16.14 -3.27 -0.05 -20.48 16 15 C 0.51 15.89 7.72 87.24 0.67 16.56 16 16 O -0.52 -18.97 13.97 -3.34 -0.05 -19.01 16 17 N -0.63 -13.76 5.31 -304.91 -1.62 -15.38 16 18 C 0.12 2.29 6.27 38.17 0.24 2.53 16 19 C -0.08 -0.72 9.97 22.49 0.22 -0.50 16 20 C -0.06 -0.32 10.02 22.14 0.22 -0.10 16 21 C -0.10 -1.03 6.38 -19.59 -0.13 -1.16 16 22 C -0.21 -4.62 6.27 -20.16 -0.13 -4.75 16 23 C -0.06 -1.57 8.74 22.68 0.20 -1.37 16 24 C 0.52 13.97 8.58 70.25 0.60 14.58 16 25 O -0.51 -18.53 18.04 19.61 0.35 -18.18 16 26 O -0.33 -6.23 11.13 -52.76 -0.59 -6.82 16 27 C 0.09 0.53 7.93 71.28 0.56 1.09 16 28 H 0.06 2.37 4.46 -2.39 -0.01 2.36 16 29 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.26 15.80 8.72 -92.71 -0.81 14.99 16 32 H 0.41 16.58 8.00 -92.71 -0.74 15.84 16 33 H 0.44 7.30 8.30 -92.71 -0.77 6.53 16 34 H 0.18 0.44 8.06 -2.91 -0.02 0.42 16 35 H 0.20 -0.89 8.06 -2.91 -0.02 -0.91 16 36 H 0.12 3.77 6.30 -2.91 -0.02 3.75 16 37 H 0.15 -0.05 8.14 -2.38 -0.02 -0.07 16 38 H 0.16 -0.21 8.14 -2.39 -0.02 -0.23 16 Total: -1.00 -80.85 332.87 1.92 -78.94 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -0.49 Total: 19.43 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: 4.60 Total: 17.44 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -3.59 Total: -101.55 kcal Atomic # 8 Polarization: -64.15 SS G_CDS: -0.33 Total: -64.49 kcal Atomic # 14 Polarization: 48.50 SS G_CDS: 1.74 Total: 50.23 kcal Total: -80.85 1.92 -78.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323513794.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.156 kcal (2) G-P(sol) polarization free energy of solvation -80.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds