Wall clock time and date at job start Tue Mar 31 2020 11:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47050 * 2 1 4 4 C 1.50697 * 109.46940 * 119.99853 * 2 1 3 5 5 H 1.08004 * 119.99590 * 119.99900 * 4 2 1 6 6 C 1.37868 * 120.00221 * 300.00149 * 4 2 1 7 7 N 1.31517 * 119.99969 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00077 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46889 * 179.97438 * 8 6 4 10 10 H 1.48495 * 109.47391 * 299.99970 * 8 6 4 11 11 H 1.48500 * 109.47099 * 60.00265 * 8 6 4 12 12 N 1.46502 * 109.47159 * 239.99853 * 2 1 3 13 13 C 1.34775 * 120.00159 * 85.00103 * 12 2 1 14 14 O 1.21364 * 119.99969 * 0.02562 * 13 12 2 15 15 C 1.49348 * 120.00201 * 179.97438 * 13 12 2 16 16 O 1.21376 * 120.00135 * 0.02562 * 15 13 12 17 17 N 1.34782 * 119.99969 * 179.97438 * 15 13 12 18 18 C 1.39756 * 119.99814 * 174.72249 * 17 15 13 19 19 C 1.39061 * 119.92021 * 146.64668 * 18 17 15 20 20 C 1.38327 * 120.14564 * 179.97438 * 19 18 17 21 21 C 1.37628 * 120.05406 * 0.02562 * 20 19 18 22 22 C 1.39791 * 120.42605 * 359.97438 * 21 20 19 23 23 C 1.38660 * 119.92870 * 326.37430 * 18 17 15 24 24 C 1.47462 * 108.03409 * 179.97438 * 22 21 20 25 25 O 1.21476 * 124.89134 * 180.02562 * 24 22 21 26 26 O 1.34330 * 110.21044 * 0.02562 * 24 22 21 27 27 C 1.45388 * 109.02534 * 0.02562 * 26 24 22 28 28 H 1.08993 * 109.47330 * 299.99943 * 1 2 3 29 29 H 1.09001 * 109.47275 * 60.00199 * 1 2 3 30 30 H 1.09005 * 109.47115 * 179.97438 * 1 2 3 31 31 H 0.97003 * 119.99656 * 179.97438 * 7 6 4 32 32 H 0.97005 * 120.00329 * 265.00202 * 12 2 1 33 33 H 0.97001 * 119.99817 * 354.72914 * 17 15 13 34 34 H 1.08005 * 119.92999 * 0.02562 * 19 18 17 35 35 H 1.08001 * 119.97983 * 180.02562 * 20 19 18 36 36 H 1.08002 * 120.12477 * 0.02562 * 23 18 17 37 37 H 1.09001 * 110.06412 * 240.76357 * 27 26 24 38 38 H 1.08991 * 110.07088 * 119.23894 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6033 8 14 2.3212 -1.1204 4.0079 9 1 1.8268 -0.4199 5.2205 10 1 1.8257 -2.5202 4.0078 11 1 3.8062 -1.1209 4.0082 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0184 -2.3571 14 8 1.8589 1.1593 -2.4116 15 6 2.6455 -0.7223 -3.5764 16 8 2.9341 -1.8999 -3.5219 17 7 2.7737 -0.0500 -4.7376 18 6 3.3429 -0.6775 -5.8490 19 6 2.8998 -0.3588 -7.1281 20 6 3.4603 -0.9766 -8.2315 21 6 4.4585 -1.9096 -8.0661 22 6 4.9138 -2.2400 -6.7864 23 6 4.3520 -1.6123 -5.6744 24 6 5.9732 -3.2561 -6.9270 25 8 6.5804 -3.7593 -6.0030 26 8 6.1700 -3.5450 -8.2240 27 6 5.2618 -2.7460 -9.0306 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7088 1.1614 3.4844 32 1 2.2490 -1.6319 -1.1526 33 1 2.4710 0.8693 -4.8017 34 1 2.1169 0.3734 -7.2603 35 1 3.1145 -0.7267 -9.2236 36 1 4.6986 -1.8566 -4.6811 37 1 4.5992 -3.3959 -9.6022 38 1 5.8274 -2.1023 -9.7040 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323513804.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:31 Heat of formation + Delta-G solvation = -106.762926 kcal Electronic energy + Delta-G solvation = -25329.037399 eV Core-core repulsion = 21330.395991 eV Total energy + Delta-G solvation = -3998.641408 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.94422 -40.77878 -38.97157 -38.00722 -37.51353 -35.51281 -34.75144 -32.49209 -31.66650 -31.14642 -29.24938 -27.49536 -25.46331 -25.28754 -24.31648 -22.29548 -21.35991 -20.90619 -19.77217 -18.97141 -18.13458 -17.38815 -17.11227 -16.85144 -16.30449 -15.87475 -15.77962 -15.28957 -15.16419 -14.94849 -14.37811 -14.12546 -14.07407 -14.01822 -13.61262 -13.33808 -13.10545 -12.56874 -12.54082 -12.24573 -11.86927 -11.47497 -11.35735 -11.17721 -11.03725 -10.86502 -10.73961 -10.47946 -10.41524 -10.31062 -9.58376 -9.25345 -9.18352 -8.67379 -8.58474 -8.21703 -6.21382 -4.31350 0.14309 0.69049 1.62387 2.16795 2.39700 2.71985 3.20972 3.23937 3.28544 3.30765 3.34141 3.56699 3.70217 3.93502 4.29099 4.30461 4.58931 4.66398 4.67087 4.87676 4.96441 4.99311 5.11889 5.30322 5.52873 5.63326 5.77346 5.84757 6.26147 6.39811 6.65104 6.76477 6.85174 6.95622 7.11722 7.16920 7.29626 7.56130 7.65638 7.76780 7.99490 8.33678 8.52106 8.78062 9.36039 10.84612 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.022285 B = 0.002647 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.145830 B =10576.564521 C =11643.255529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.262 3.738 3 H 0.055 0.945 4 C -0.539 4.539 5 H 0.065 0.935 6 C 0.069 3.931 7 N -0.884 5.884 8 Si 0.905 3.095 9 H -0.285 1.285 10 H -0.275 1.275 11 H -0.275 1.275 12 N -0.665 5.665 13 C 0.496 3.504 14 O -0.534 6.534 15 C 0.508 3.492 16 O -0.498 6.498 17 N -0.653 5.653 18 C 0.151 3.849 19 C -0.104 4.104 20 C -0.076 4.076 21 C -0.125 4.125 22 C -0.173 4.173 23 C -0.039 4.039 24 C 0.523 3.477 25 O -0.444 6.444 26 O -0.320 6.320 27 C 0.096 3.904 28 H 0.095 0.905 29 H 0.016 0.984 30 H 0.030 0.970 31 H 0.267 0.733 32 H 0.403 0.597 33 H 0.427 0.573 34 H 0.144 0.856 35 H 0.141 0.859 36 H 0.150 0.850 37 H 0.116 0.884 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.365 -1.759 -24.588 24.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.161 3.839 3 H 0.073 0.927 4 C -0.577 4.577 5 H 0.083 0.917 6 C -0.135 4.135 7 N -0.521 5.521 8 Si 0.732 3.268 9 H -0.211 1.211 10 H -0.200 1.200 11 H -0.200 1.200 12 N -0.314 5.314 13 C 0.274 3.726 14 O -0.412 6.412 15 C 0.291 3.709 16 O -0.371 6.371 17 N -0.300 5.300 18 C 0.056 3.944 19 C -0.125 4.125 20 C -0.094 4.094 21 C -0.126 4.126 22 C -0.175 4.175 23 C -0.059 4.059 24 C 0.364 3.636 25 O -0.328 6.328 26 O -0.236 6.236 27 C 0.022 3.978 28 H 0.114 0.886 29 H 0.035 0.965 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.238 0.762 33 H 0.266 0.734 34 H 0.162 0.838 35 H 0.159 0.841 36 H 0.168 0.832 37 H 0.134 0.866 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.695 -2.023 -23.937 24.305 hybrid contribution 0.076 -0.324 0.826 0.890 sum 3.772 -2.347 -23.111 23.534 Atomic orbital electron populations 1.22106 0.97734 0.99630 1.01261 1.19003 0.91489 0.94144 0.79227 0.92706 1.21154 1.32985 1.13582 0.90008 0.91730 1.24869 0.94623 0.94906 0.99108 1.69879 1.35603 1.22317 1.24261 0.86441 0.79284 0.79628 0.81415 1.21052 1.20002 1.20028 1.46544 1.60936 1.14598 1.09299 1.19554 0.81380 0.87286 0.84416 1.90740 1.50776 1.15091 1.84634 1.21131 0.78011 0.86979 0.84807 1.90783 1.46617 1.15143 1.84515 1.43277 1.60164 1.17663 1.08936 1.17617 0.93516 0.96282 0.87017 1.21190 0.99822 1.01118 0.90362 1.20006 0.95022 0.95130 0.99273 1.20797 0.98346 0.98567 0.94916 1.20593 1.00844 1.01415 0.94678 1.20871 0.91888 0.93662 0.99485 1.20445 0.81102 0.80086 0.81982 1.90929 1.49840 1.53225 1.38831 1.87243 1.57187 1.60543 1.18600 1.22368 0.90813 0.92997 0.91668 0.88634 0.96460 0.95040 0.92341 0.76217 0.73378 0.83792 0.84083 0.83193 0.86589 0.86543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.26 37.16 0.34 -3.19 16 2 C 0.26 6.43 2.56 -69.08 -0.18 6.26 16 3 H 0.06 1.51 7.58 -51.93 -0.39 1.12 16 4 C -0.54 -14.06 8.73 -34.44 -0.30 -14.36 16 5 H 0.06 1.63 7.74 -52.48 -0.41 1.23 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -24.15 11.32 55.43 0.63 -23.52 16 8 Si 0.91 20.46 29.54 -169.99 -5.02 15.44 16 9 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 12 N -0.67 -13.82 5.06 -55.40 -0.28 -14.10 16 13 C 0.50 9.42 7.85 -11.63 -0.09 9.33 16 14 O -0.53 -11.11 16.15 5.48 0.09 -11.02 16 15 C 0.51 8.05 7.62 -11.63 -0.09 7.96 16 16 O -0.50 -8.73 14.17 5.47 0.08 -8.66 16 17 N -0.65 -7.90 5.32 -10.32 -0.05 -7.96 16 18 C 0.15 1.65 6.27 -83.78 -0.52 1.13 16 19 C -0.10 -0.77 9.96 -39.24 -0.39 -1.16 16 20 C -0.08 -0.45 10.02 -39.77 -0.40 -0.84 16 21 C -0.12 -0.95 6.38 -104.20 -0.67 -1.62 16 22 C -0.17 -1.99 6.27 -105.09 -0.66 -2.65 16 23 C -0.04 -0.50 8.70 -38.95 -0.34 -0.84 16 24 C 0.52 6.89 8.58 34.49 0.30 7.18 16 25 O -0.44 -7.54 18.04 -18.92 -0.34 -7.88 16 26 O -0.32 -3.30 11.13 -39.14 -0.44 -3.74 16 27 C 0.10 0.52 7.93 36.07 0.29 0.81 16 28 H 0.10 2.46 6.07 -51.93 -0.32 2.15 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.40 7.85 8.01 -40.82 -0.33 7.53 16 33 H 0.43 4.34 8.29 -40.82 -0.34 4.00 16 34 H 0.14 0.68 8.06 -52.48 -0.42 0.25 16 35 H 0.14 0.34 8.06 -52.49 -0.42 -0.09 16 36 H 0.15 2.27 6.43 -52.49 -0.34 1.93 16 37 H 0.12 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.12 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 338.59 15.07 5.10 5.10 Total: -1.00 -32.54 338.59 -6.83 -39.37 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -3.79 Total: 7.23 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: -2.80 Total: 9.73 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: 0.29 Total: -45.58 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -0.61 Total: -31.30 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.54 -6.83 -39.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323513804.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.389 kcal (2) G-P(sol) polarization free energy of solvation -32.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds