Wall clock time and date at job start Tue Mar 31 2020 11:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47050 * 2 1 4 4 C 1.50697 * 109.46940 * 119.99853 * 2 1 3 5 5 H 1.08004 * 119.99590 * 119.99900 * 4 2 1 6 6 C 1.37868 * 120.00221 * 300.00149 * 4 2 1 7 7 N 1.31517 * 119.99969 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00077 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46889 * 179.97438 * 8 6 4 10 10 H 1.48495 * 109.47391 * 299.99970 * 8 6 4 11 11 H 1.48500 * 109.47099 * 60.00265 * 8 6 4 12 12 N 1.46502 * 109.47159 * 239.99853 * 2 1 3 13 13 C 1.34775 * 120.00159 * 85.00103 * 12 2 1 14 14 O 1.21364 * 119.99969 * 0.02562 * 13 12 2 15 15 C 1.49348 * 120.00201 * 179.97438 * 13 12 2 16 16 O 1.21376 * 120.00135 * 0.02562 * 15 13 12 17 17 N 1.34782 * 119.99969 * 179.97438 * 15 13 12 18 18 C 1.39756 * 119.99814 * 174.72249 * 17 15 13 19 19 C 1.39061 * 119.92021 * 146.64668 * 18 17 15 20 20 C 1.38327 * 120.14564 * 179.97438 * 19 18 17 21 21 C 1.37628 * 120.05406 * 0.02562 * 20 19 18 22 22 C 1.39791 * 120.42605 * 359.97438 * 21 20 19 23 23 C 1.38660 * 119.92870 * 326.37430 * 18 17 15 24 24 C 1.47462 * 108.03409 * 179.97438 * 22 21 20 25 25 O 1.21476 * 124.89134 * 180.02562 * 24 22 21 26 26 O 1.34330 * 110.21044 * 0.02562 * 24 22 21 27 27 C 1.45388 * 109.02534 * 0.02562 * 26 24 22 28 28 H 1.08993 * 109.47330 * 299.99943 * 1 2 3 29 29 H 1.09001 * 109.47275 * 60.00199 * 1 2 3 30 30 H 1.09005 * 109.47115 * 179.97438 * 1 2 3 31 31 H 0.97003 * 119.99656 * 179.97438 * 7 6 4 32 32 H 0.97005 * 120.00329 * 265.00202 * 12 2 1 33 33 H 0.97001 * 119.99817 * 354.72914 * 17 15 13 34 34 H 1.08005 * 119.92999 * 0.02562 * 19 18 17 35 35 H 1.08001 * 119.97983 * 180.02562 * 20 19 18 36 36 H 1.08002 * 120.12477 * 0.02562 * 23 18 17 37 37 H 1.09001 * 110.06412 * 240.76357 * 27 26 24 38 38 H 1.08991 * 110.07088 * 119.23894 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6033 8 14 2.3212 -1.1204 4.0079 9 1 1.8268 -0.4199 5.2205 10 1 1.8257 -2.5202 4.0078 11 1 3.8062 -1.1209 4.0082 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0184 -2.3571 14 8 1.8589 1.1593 -2.4116 15 6 2.6455 -0.7223 -3.5764 16 8 2.9341 -1.8999 -3.5219 17 7 2.7737 -0.0500 -4.7376 18 6 3.3429 -0.6775 -5.8490 19 6 2.8998 -0.3588 -7.1281 20 6 3.4603 -0.9766 -8.2315 21 6 4.4585 -1.9096 -8.0661 22 6 4.9138 -2.2400 -6.7864 23 6 4.3520 -1.6123 -5.6744 24 6 5.9732 -3.2561 -6.9270 25 8 6.5804 -3.7593 -6.0030 26 8 6.1700 -3.5450 -8.2240 27 6 5.2618 -2.7460 -9.0306 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7088 1.1614 3.4844 32 1 2.2490 -1.6319 -1.1526 33 1 2.4710 0.8693 -4.8017 34 1 2.1169 0.3734 -7.2603 35 1 3.1145 -0.7267 -9.2236 36 1 4.6986 -1.8566 -4.6811 37 1 4.5992 -3.3959 -9.6022 38 1 5.8274 -2.1023 -9.7040 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323513804.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:30 Heat of formation + Delta-G solvation = -130.667059 kcal Electronic energy + Delta-G solvation = -25330.073960 eV Core-core repulsion = 21330.395991 eV Total energy + Delta-G solvation = -3999.677969 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.76124 -41.99537 -40.24668 -39.16577 -38.51225 -37.08365 -36.02707 -34.37835 -32.38225 -31.97010 -31.09594 -28.25319 -27.40016 -26.50302 -25.29981 -23.36441 -22.41453 -22.12624 -21.30541 -20.28088 -19.20378 -18.40068 -18.07092 -17.86908 -17.82947 -17.23878 -16.96353 -16.89568 -16.17531 -15.95223 -15.90257 -15.26520 -15.05028 -14.79465 -14.76582 -14.55721 -14.45609 -14.02401 -13.76922 -13.23923 -13.11497 -13.08038 -12.92744 -12.80515 -12.61523 -12.32104 -12.27834 -12.17012 -11.62130 -11.37310 -11.19968 -10.76502 -10.63945 -10.25816 -10.02949 -9.40142 -8.23123 -6.40378 -0.62809 -0.17735 0.42489 1.17357 1.29768 1.44369 1.45186 1.53430 1.95433 2.04473 2.35930 2.51235 2.55961 2.78222 3.07431 3.07745 3.40376 3.68306 3.92007 4.10210 4.18595 4.39074 4.48594 4.60439 4.67525 4.82856 4.86395 4.92927 4.98741 5.05689 5.10980 5.26951 5.38771 5.47932 5.55939 5.64808 5.72552 5.88839 6.01209 6.22719 6.45384 6.60492 6.70086 7.00415 7.31748 8.82744 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.022285 B = 0.002647 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.145830 B =10576.564521 C =11643.255529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.269 3.731 3 H 0.017 0.983 4 C -0.557 4.557 5 H 0.068 0.932 6 C 0.023 3.977 7 N -0.911 5.911 8 Si 0.969 3.031 9 H -0.281 1.281 10 H -0.267 1.267 11 H -0.273 1.273 12 N -0.671 5.671 13 C 0.497 3.503 14 O -0.552 6.552 15 C 0.517 3.483 16 O -0.520 6.520 17 N -0.632 5.632 18 C 0.122 3.878 19 C -0.080 4.080 20 C -0.059 4.059 21 C -0.098 4.098 22 C -0.206 4.206 23 C -0.064 4.064 24 C 0.519 3.481 25 O -0.506 6.506 26 O -0.329 6.329 27 C 0.089 3.911 28 H 0.074 0.926 29 H 0.024 0.976 30 H 0.039 0.961 31 H 0.269 0.731 32 H 0.409 0.591 33 H 0.437 0.563 34 H 0.181 0.819 35 H 0.197 0.803 36 H 0.111 0.889 37 H 0.155 0.845 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.606 -1.538 -28.383 28.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.167 3.833 3 H 0.035 0.965 4 C -0.595 4.595 5 H 0.086 0.914 6 C -0.179 4.179 7 N -0.548 5.548 8 Si 0.794 3.206 9 H -0.206 1.206 10 H -0.192 1.192 11 H -0.199 1.199 12 N -0.320 5.320 13 C 0.277 3.723 14 O -0.432 6.432 15 C 0.299 3.701 16 O -0.395 6.395 17 N -0.280 5.280 18 C 0.028 3.972 19 C -0.100 4.100 20 C -0.077 4.077 21 C -0.099 4.099 22 C -0.209 4.209 23 C -0.085 4.085 24 C 0.364 3.636 25 O -0.395 6.395 26 O -0.244 6.244 27 C 0.017 3.983 28 H 0.093 0.907 29 H 0.043 0.957 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.245 0.755 33 H 0.278 0.722 34 H 0.199 0.801 35 H 0.214 0.786 36 H 0.129 0.871 37 H 0.172 0.828 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 2.932 -1.780 -27.826 28.036 hybrid contribution 0.313 -0.319 1.747 1.804 sum 3.246 -2.100 -26.078 26.363 Atomic orbital electron populations 1.21926 0.97207 0.99836 1.00513 1.18626 0.91846 0.92367 0.80494 0.96493 1.21468 1.33236 1.13849 0.90924 0.91425 1.25684 0.94696 0.95530 1.01943 1.69999 1.36424 1.23455 1.24958 0.85436 0.78608 0.78731 0.77826 1.20590 1.19194 1.19854 1.46308 1.61729 1.14822 1.09190 1.20032 0.80311 0.87032 0.84969 1.90716 1.51295 1.15989 1.85188 1.20333 0.78384 0.86504 0.84909 1.90792 1.48002 1.15888 1.84803 1.43027 1.59035 1.17832 1.08151 1.17794 0.94264 0.97250 0.87866 1.21687 0.99309 1.00354 0.88611 1.20607 0.93058 0.92943 1.01088 1.21228 0.97620 0.97773 0.93288 1.20512 1.01736 1.02330 0.96304 1.20682 0.93722 0.95612 0.98442 1.20808 0.80725 0.79696 0.82370 1.90876 1.52185 1.55567 1.40861 1.87207 1.58324 1.61295 1.17550 1.22999 0.91019 0.93599 0.90699 0.90725 0.95735 0.94223 0.92212 0.75531 0.72184 0.80130 0.78616 0.87122 0.82813 0.82465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.62 9.26 71.98 0.67 -5.96 16 2 C 0.27 13.67 2.56 44.24 0.11 13.79 16 3 H 0.02 0.99 7.58 -2.39 -0.02 0.98 16 4 C -0.56 -29.71 8.73 25.60 0.22 -29.48 16 5 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 6 C 0.02 1.20 5.30 84.65 0.45 1.65 16 7 N -0.91 -50.81 11.32 21.44 0.24 -50.57 16 8 Si 0.97 42.26 29.54 68.60 2.03 44.29 16 9 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 10 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 11 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 12 N -0.67 -28.92 5.06 -447.54 -2.27 -31.18 16 13 C 0.50 19.46 7.85 87.24 0.68 20.14 16 14 O -0.55 -23.51 16.15 -3.29 -0.05 -23.56 16 15 C 0.52 16.83 7.62 87.24 0.66 17.50 16 16 O -0.52 -19.15 14.17 -3.33 -0.05 -19.20 16 17 N -0.63 -14.96 5.32 -304.92 -1.62 -16.58 16 18 C 0.12 2.51 6.27 38.18 0.24 2.75 16 19 C -0.08 -0.80 9.96 22.49 0.22 -0.58 16 20 C -0.06 -0.33 10.02 22.15 0.22 -0.11 16 21 C -0.10 -1.10 6.38 -19.59 -0.13 -1.22 16 22 C -0.21 -4.69 6.27 -20.17 -0.13 -4.82 16 23 C -0.06 -1.71 8.70 22.68 0.20 -1.51 16 24 C 0.52 14.21 8.58 70.25 0.60 14.81 16 25 O -0.51 -18.77 18.04 19.61 0.35 -18.42 16 26 O -0.33 -6.32 11.13 -52.75 -0.59 -6.90 16 27 C 0.09 0.56 7.93 71.28 0.56 1.12 16 28 H 0.07 3.95 6.07 -2.39 -0.01 3.94 16 29 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 32 H 0.41 16.59 8.01 -92.70 -0.74 15.84 16 33 H 0.44 8.31 8.29 -92.71 -0.77 7.54 16 34 H 0.18 0.55 8.06 -2.91 -0.02 0.53 16 35 H 0.20 -0.84 8.06 -2.91 -0.02 -0.86 16 36 H 0.11 3.76 6.43 -2.91 -0.02 3.74 16 37 H 0.15 -0.04 8.14 -2.39 -0.02 -0.06 16 38 H 0.16 -0.15 8.14 -2.39 -0.02 -0.17 16 Total: -1.00 -77.99 338.59 2.29 -75.70 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -0.36 Total: 18.34 kcal Atomic # 6 Polarization: 23.48 SS G_CDS: 4.60 Total: 28.09 kcal Atomic # 7 Polarization: -94.69 SS G_CDS: -3.65 Total: -98.33 kcal Atomic # 8 Polarization: -67.75 SS G_CDS: -0.33 Total: -68.08 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -77.99 2.29 -75.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323513804.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.970 kcal (2) G-P(sol) polarization free energy of solvation -77.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds