Wall clock time and date at job start Tue Mar 31 2020 12:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47126 * 78.68569 * 3 2 1 5 5 C 1.34775 * 119.99722 * 179.97438 * 4 3 2 6 6 O 1.21280 * 120.00325 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.99794 * 179.97438 * 5 4 3 8 8 N 1.46499 * 109.47140 * 180.02562 * 7 5 4 9 9 C 1.34777 * 120.00133 * 180.02562 * 8 7 5 10 10 O 1.21587 * 119.99933 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99793 * 179.97438 * 9 8 7 12 12 C 1.40027 * 119.99602 * 175.49473 * 11 9 8 13 13 C 1.38914 * 120.00061 * 215.12579 * 12 11 9 14 14 C 1.38009 * 120.00151 * 180.02562 * 13 12 11 15 15 C 1.38905 * 119.99790 * 359.97438 * 14 13 12 16 16 O 1.35784 * 119.99888 * 180.02562 * 15 14 13 17 17 C 1.34817 * 117.00006 * 5.34085 * 16 15 14 18 18 H 1.08000 * 119.99773 * 354.97190 * 17 16 15 19 19 C 1.38622 * 119.99858 * 174.96724 * 17 16 15 20 20 N 1.31571 * 120.00433 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99725 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46921 * 90.00119 * 21 19 17 23 23 H 1.48498 * 109.46855 * 209.99730 * 21 19 17 24 24 H 1.48498 * 109.47141 * 329.99776 * 21 19 17 25 25 C 1.38907 * 120.00537 * 0.27428 * 15 14 13 26 26 C 1.38011 * 119.99688 * 359.45144 * 25 15 14 27 27 H 1.09002 * 109.46948 * 318.68536 * 3 2 1 28 28 H 1.08996 * 109.46675 * 198.68834 * 3 2 1 29 29 H 0.97000 * 119.99605 * 359.97438 * 4 3 2 30 30 H 1.09004 * 109.46700 * 60.00443 * 7 5 4 31 31 H 1.09003 * 109.47017 * 300.00655 * 7 5 4 32 32 H 0.97008 * 119.99849 * 0.02562 * 8 7 5 33 33 H 0.96990 * 120.00200 * 355.49507 * 11 9 8 34 34 H 1.08001 * 119.99692 * 0.02562 * 13 12 11 35 35 H 1.07992 * 119.99909 * 179.97438 * 14 13 12 36 36 H 0.96998 * 120.00669 * 180.02562 * 20 19 17 37 37 H 1.07992 * 120.00245 * 179.70487 * 25 15 14 38 38 H 1.07998 * 120.00426 * 180.27380 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0965 -0.2701 -1.3544 5 6 4.4216 -0.3173 -1.5959 6 8 5.2096 -0.1361 -0.6920 7 6 4.9241 -0.5964 -2.9890 8 7 6.3891 -0.5956 -2.9890 9 6 7.0631 -0.8243 -4.1335 10 8 6.4553 -1.0307 -5.1662 11 7 8.4109 -0.8230 -4.1336 12 6 9.1112 -1.1532 -5.3003 13 6 10.3112 -1.8480 -5.2170 14 6 11.0018 -2.1730 -6.3668 15 6 10.4965 -1.8058 -7.6076 16 8 11.1756 -2.1260 -8.7389 17 6 12.2738 -2.8950 -8.5967 18 1 12.6233 -3.1599 -7.6098 19 6 12.9541 -3.3457 -9.7172 20 7 12.5279 -3.0235 -10.9196 21 14 14.4754 -4.4118 -9.5201 22 1 14.0772 -5.8422 -9.4927 23 1 15.3961 -4.1762 -10.6610 24 1 15.1620 -4.0646 -8.2500 25 6 9.2991 -1.1066 -7.6907 26 6 8.6057 -0.7865 -6.5412 27 1 2.9717 -0.7711 0.6785 28 1 2.9709 0.9743 0.3293 29 1 2.4662 -0.4154 -2.0772 30 1 4.5600 0.1748 -3.6679 31 1 4.5615 -1.5704 -3.3177 32 1 6.8740 -0.4306 -2.1652 33 1 8.8957 -0.5934 -3.3255 34 1 10.7038 -2.1338 -4.2523 35 1 11.9349 -2.7127 -6.3020 36 1 13.0038 -3.3392 -11.7036 37 1 8.9087 -0.8170 -8.6551 38 1 7.6725 -0.2468 -6.6060 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326604770.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:43 Heat of formation + Delta-G solvation = -19.112051 kcal Electronic energy + Delta-G solvation = -24108.244532 eV Core-core repulsion = 20145.696702 eV Total energy + Delta-G solvation = -3962.547830 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.81491 -40.03548 -38.72635 -37.56978 -36.64700 -35.30812 -34.55500 -33.94817 -32.15694 -30.18127 -30.07936 -28.10407 -26.57214 -25.23924 -22.31324 -21.82908 -21.29215 -20.60562 -19.56664 -18.59401 -17.85095 -17.40605 -17.06269 -16.69776 -16.66275 -16.02080 -15.67737 -15.11467 -14.81837 -14.67981 -14.53528 -14.21520 -13.67214 -13.58871 -13.54841 -13.49991 -13.18892 -13.18721 -12.79011 -12.66750 -12.44474 -11.81215 -11.54465 -11.49697 -11.01065 -10.74495 -10.70213 -10.45567 -10.04142 -10.01582 -9.63533 -9.35275 -9.22537 -8.67443 -8.16941 -6.89343 -6.41841 -4.00032 1.48933 1.84892 2.00827 2.18049 2.25323 2.44377 2.87104 3.10677 3.13261 3.15193 3.19992 3.27501 3.98228 3.99065 4.23828 4.56183 4.61099 4.67592 4.92343 4.95225 5.12179 5.36910 5.39421 5.58713 5.80913 6.07077 6.15705 6.23764 6.28721 6.55216 6.68386 6.72371 6.86674 6.93678 7.14117 7.24117 7.27812 7.34944 7.46096 7.82780 8.00198 8.02915 8.60799 9.03610 9.74475 10.76187 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.045869 B = 0.001769 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.292299 B =15825.336904 C =16118.229784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C 0.191 3.809 3 C 0.221 3.779 4 N -0.728 5.728 5 C 0.520 3.480 6 O -0.527 6.527 7 C 0.123 3.877 8 N -0.740 5.740 9 C 0.704 3.296 10 O -0.576 6.576 11 N -0.671 5.671 12 C 0.052 3.948 13 C -0.091 4.091 14 C -0.220 4.220 15 C 0.146 3.854 16 O -0.178 6.178 17 C -0.391 4.391 18 H 0.092 0.908 19 C 0.039 3.961 20 N -0.863 5.863 21 Si 0.941 3.059 22 H -0.274 1.274 23 H -0.278 1.278 24 H -0.268 1.268 25 C -0.179 4.179 26 C -0.067 4.067 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.412 0.588 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.407 0.593 33 H 0.400 0.600 34 H 0.110 0.890 35 H 0.131 0.869 36 H 0.269 0.731 37 H 0.120 0.880 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.590 5.726 21.017 26.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.078 5.078 2 C -0.128 4.128 3 C 0.094 3.906 4 N -0.384 5.384 5 C 0.307 3.693 6 O -0.402 6.402 7 C -0.005 4.005 8 N -0.400 5.400 9 C 0.404 3.596 10 O -0.453 6.453 11 N -0.318 5.318 12 C -0.041 4.041 13 C -0.111 4.111 14 C -0.240 4.240 15 C 0.092 3.908 16 O -0.081 6.081 17 C -0.468 4.468 18 H 0.109 0.891 19 C -0.165 4.165 20 N -0.498 5.498 21 Si 0.765 3.235 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.192 1.192 25 C -0.199 4.199 26 C -0.087 4.087 27 H 0.136 0.864 28 H 0.136 0.864 29 H 0.247 0.753 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.244 0.756 33 H 0.234 0.766 34 H 0.128 0.872 35 H 0.149 0.851 36 H 0.079 0.921 37 H 0.138 0.862 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.248 5.677 20.270 26.591 hybrid contribution 1.264 -0.494 0.700 1.527 sum -14.984 5.183 20.970 26.289 Atomic orbital electron populations 1.81329 1.12682 1.08316 1.05480 1.28972 0.94980 0.93730 0.95119 1.18619 0.80079 1.05734 0.86134 1.45696 1.07621 1.74454 1.10645 1.20638 0.81660 0.75869 0.91177 1.90750 1.54840 1.48563 1.46066 1.20794 0.81774 1.04956 0.92989 1.44690 1.05328 1.78817 1.11205 1.15806 0.81979 0.78343 0.83459 1.90941 1.67632 1.55958 1.30752 1.42229 1.03983 1.71929 1.13659 1.17036 0.95355 1.06802 0.84912 1.20462 0.94911 0.97856 0.97894 1.20954 1.03026 1.08469 0.91503 1.19427 0.91097 0.93256 0.87005 1.83993 1.37077 1.60400 1.26652 1.21308 1.02213 1.28659 0.94582 0.89087 1.25274 0.99307 0.97696 0.94260 1.70044 1.39357 1.42784 0.97571 0.85721 0.79840 0.79561 0.78342 1.19929 1.20312 1.19232 1.20153 0.95088 1.06194 0.98426 1.20768 0.99127 0.98553 0.90236 0.86445 0.86443 0.75255 0.87958 0.87941 0.75619 0.76607 0.87173 0.85129 0.92062 0.86160 0.85119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -3.05 18.54 42.15 0.78 -2.27 16 2 C 0.19 0.77 15.55 -20.76 -0.32 0.45 16 3 C 0.22 0.35 6.15 -6.83 -0.04 0.31 16 4 N -0.73 -1.73 5.54 -63.16 -0.35 -2.08 16 5 C 0.52 2.71 7.90 -10.98 -0.09 2.62 16 6 O -0.53 -4.28 15.67 5.56 0.09 -4.19 16 7 C 0.12 0.78 6.15 -5.19 -0.03 0.75 16 8 N -0.74 -6.74 5.53 -66.41 -0.37 -7.10 16 9 C 0.70 9.45 8.41 -86.92 -0.73 8.72 16 10 O -0.58 -9.89 13.78 5.29 0.07 -9.82 16 11 N -0.67 -8.90 5.35 -14.18 -0.08 -8.98 16 12 C 0.05 0.90 6.30 -83.61 -0.53 0.37 16 13 C -0.09 -1.60 9.96 -39.42 -0.39 -2.00 16 14 C -0.22 -4.67 9.16 -39.42 -0.36 -5.03 16 15 C 0.15 3.53 6.65 -39.09 -0.26 3.27 16 16 O -0.18 -5.07 9.76 -0.02 0.00 -5.07 16 17 C -0.39 -10.87 9.48 30.87 0.29 -10.57 16 18 H 0.09 2.32 5.20 -52.49 -0.27 2.04 16 19 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 20 N -0.86 -25.29 13.67 55.48 0.76 -24.53 16 21 Si 0.94 20.39 29.55 -169.99 -5.02 15.37 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 23 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 24 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 25 C -0.18 -3.90 9.99 -39.42 -0.39 -4.30 16 26 C -0.07 -1.30 8.69 -39.41 -0.34 -1.64 16 27 H 0.12 0.08 8.14 -51.93 -0.42 -0.34 16 28 H 0.12 0.08 8.14 -51.93 -0.42 -0.35 16 29 H 0.41 0.30 8.45 -40.82 -0.34 -0.05 16 30 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.41 3.19 7.46 -40.82 -0.30 2.89 16 33 H 0.40 3.88 8.84 -40.82 -0.36 3.52 16 34 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 35 H 0.13 2.75 5.63 -52.49 -0.30 2.45 16 36 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.12 2.55 8.06 -52.49 -0.42 2.13 16 38 H 0.13 2.48 6.22 -52.49 -0.33 2.15 16 LS Contribution 347.35 15.07 5.23 5.23 Total: -1.00 -36.97 347.35 -5.75 -42.72 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -3.58 Total: 6.79 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -3.29 Total: -6.07 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: 0.75 Total: -44.96 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: 0.16 Total: -19.09 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.97 -5.75 -42.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326604770.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.609 kcal (2) G-P(sol) polarization free energy of solvation -36.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds