Wall clock time and date at job start Tue Mar 31 2020 12:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47126 * 78.68569 * 3 2 1 5 5 C 1.34775 * 119.99722 * 179.97438 * 4 3 2 6 6 O 1.21280 * 120.00325 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.99794 * 179.97438 * 5 4 3 8 8 N 1.46499 * 109.47140 * 180.02562 * 7 5 4 9 9 C 1.34777 * 120.00133 * 180.02562 * 8 7 5 10 10 O 1.21587 * 119.99933 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99793 * 179.97438 * 9 8 7 12 12 C 1.40027 * 119.99602 * 175.49473 * 11 9 8 13 13 C 1.38914 * 120.00061 * 215.12579 * 12 11 9 14 14 C 1.38009 * 120.00151 * 180.02562 * 13 12 11 15 15 C 1.38905 * 119.99790 * 359.97438 * 14 13 12 16 16 O 1.35784 * 119.99888 * 180.02562 * 15 14 13 17 17 C 1.34817 * 117.00006 * 5.34085 * 16 15 14 18 18 H 1.08000 * 119.99773 * 354.97190 * 17 16 15 19 19 C 1.38622 * 119.99858 * 174.96724 * 17 16 15 20 20 N 1.31571 * 120.00433 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99725 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46921 * 90.00119 * 21 19 17 23 23 H 1.48498 * 109.46855 * 209.99730 * 21 19 17 24 24 H 1.48498 * 109.47141 * 329.99776 * 21 19 17 25 25 C 1.38907 * 120.00537 * 0.27428 * 15 14 13 26 26 C 1.38011 * 119.99688 * 359.45144 * 25 15 14 27 27 H 1.09002 * 109.46948 * 318.68536 * 3 2 1 28 28 H 1.08996 * 109.46675 * 198.68834 * 3 2 1 29 29 H 0.97000 * 119.99605 * 359.97438 * 4 3 2 30 30 H 1.09004 * 109.46700 * 60.00443 * 7 5 4 31 31 H 1.09003 * 109.47017 * 300.00655 * 7 5 4 32 32 H 0.97008 * 119.99849 * 0.02562 * 8 7 5 33 33 H 0.96990 * 120.00200 * 355.49507 * 11 9 8 34 34 H 1.08001 * 119.99692 * 0.02562 * 13 12 11 35 35 H 1.07992 * 119.99909 * 179.97438 * 14 13 12 36 36 H 0.96998 * 120.00669 * 180.02562 * 20 19 17 37 37 H 1.07992 * 120.00245 * 179.70487 * 25 15 14 38 38 H 1.07998 * 120.00426 * 180.27380 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0965 -0.2701 -1.3544 5 6 4.4216 -0.3173 -1.5959 6 8 5.2096 -0.1361 -0.6920 7 6 4.9241 -0.5964 -2.9890 8 7 6.3891 -0.5956 -2.9890 9 6 7.0631 -0.8243 -4.1335 10 8 6.4553 -1.0307 -5.1662 11 7 8.4109 -0.8230 -4.1336 12 6 9.1112 -1.1532 -5.3003 13 6 10.3112 -1.8480 -5.2170 14 6 11.0018 -2.1730 -6.3668 15 6 10.4965 -1.8058 -7.6076 16 8 11.1756 -2.1260 -8.7389 17 6 12.2738 -2.8950 -8.5967 18 1 12.6233 -3.1599 -7.6098 19 6 12.9541 -3.3457 -9.7172 20 7 12.5279 -3.0235 -10.9196 21 14 14.4754 -4.4118 -9.5201 22 1 14.0772 -5.8422 -9.4927 23 1 15.3961 -4.1762 -10.6610 24 1 15.1620 -4.0646 -8.2500 25 6 9.2991 -1.1066 -7.6907 26 6 8.6057 -0.7865 -6.5412 27 1 2.9717 -0.7711 0.6785 28 1 2.9709 0.9743 0.3293 29 1 2.4662 -0.4154 -2.0772 30 1 4.5600 0.1748 -3.6679 31 1 4.5615 -1.5704 -3.3177 32 1 6.8740 -0.4306 -2.1652 33 1 8.8957 -0.5934 -3.3255 34 1 10.7038 -2.1338 -4.2523 35 1 11.9349 -2.7127 -6.3020 36 1 13.0038 -3.3392 -11.7036 37 1 8.9087 -0.8170 -8.6551 38 1 7.6725 -0.2468 -6.6060 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326604770.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:43 Heat of formation + Delta-G solvation = -49.209367 kcal Electronic energy + Delta-G solvation = -24109.549649 eV Core-core repulsion = 20145.696702 eV Total energy + Delta-G solvation = -3963.852947 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.69711 -40.90353 -40.28654 -38.28399 -37.94306 -35.76261 -35.40374 -35.31679 -34.09508 -31.80612 -30.69612 -29.30733 -27.56358 -26.95321 -23.88340 -23.16697 -21.88231 -21.74352 -20.31165 -19.74062 -19.23632 -18.90959 -18.08741 -17.54928 -17.16375 -16.66776 -16.45258 -16.31078 -16.14126 -15.89970 -15.51042 -15.41080 -15.34148 -15.00468 -14.51534 -14.24122 -14.17385 -14.02711 -13.78225 -13.53101 -13.52620 -13.23482 -13.13531 -13.00887 -12.65229 -12.41352 -12.09006 -11.33940 -11.30735 -11.18274 -10.93520 -10.52037 -10.33890 -10.12321 -9.78001 -8.52933 -8.41312 -6.08622 0.58798 0.64063 1.10275 1.39427 1.45196 1.48427 1.56966 1.64715 1.67381 2.12173 2.22443 2.38538 2.83576 2.88820 3.21155 3.28570 3.58487 3.63292 4.11711 4.20595 4.39619 4.46117 4.49607 4.56073 4.56452 4.66999 4.82074 5.10376 5.12866 5.23050 5.33888 5.36660 5.49276 5.64371 5.74332 6.00724 6.07892 6.24454 6.26412 6.41705 6.98162 7.02979 7.05003 7.54390 7.84807 8.81891 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.045869 B = 0.001769 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.292299 B =15825.336904 C =16118.229784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.227 3.773 3 C 0.224 3.776 4 N -0.716 5.716 5 C 0.532 3.468 6 O -0.555 6.555 7 C 0.116 3.884 8 N -0.722 5.722 9 C 0.703 3.297 10 O -0.614 6.614 11 N -0.662 5.662 12 C 0.082 3.918 13 C -0.081 4.081 14 C -0.220 4.220 15 C 0.105 3.895 16 O -0.233 6.233 17 C -0.411 4.411 18 H 0.107 0.893 19 C -0.025 4.025 20 N -0.923 5.923 21 Si 1.020 2.980 22 H -0.265 1.265 23 H -0.274 1.274 24 H -0.249 1.249 25 C -0.189 4.189 26 C -0.072 4.072 27 H 0.136 0.864 28 H 0.136 0.864 29 H 0.421 0.579 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.416 0.584 33 H 0.422 0.578 34 H 0.158 0.842 35 H 0.131 0.869 36 H 0.271 0.729 37 H 0.111 0.889 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.587 5.585 24.823 29.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.143 5.143 2 C -0.091 4.091 3 C 0.098 3.902 4 N -0.371 5.371 5 C 0.318 3.682 6 O -0.433 6.433 7 C -0.011 4.011 8 N -0.381 5.381 9 C 0.403 3.597 10 O -0.494 6.494 11 N -0.311 5.311 12 C -0.012 4.012 13 C -0.101 4.101 14 C -0.240 4.240 15 C 0.055 3.945 16 O -0.140 6.140 17 C -0.488 4.488 18 H 0.124 0.876 19 C -0.222 4.222 20 N -0.561 5.561 21 Si 0.839 3.161 22 H -0.190 1.190 23 H -0.199 1.199 24 H -0.172 1.172 25 C -0.209 4.209 26 C -0.092 4.092 27 H 0.153 0.847 28 H 0.154 0.846 29 H 0.259 0.741 30 H 0.130 0.870 31 H 0.128 0.872 32 H 0.255 0.745 33 H 0.260 0.740 34 H 0.175 0.825 35 H 0.149 0.851 36 H 0.080 0.920 37 H 0.130 0.870 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -16.322 5.574 24.196 29.714 hybrid contribution 0.963 -0.299 -0.186 1.026 sum -15.358 5.275 24.010 28.985 Atomic orbital electron populations 1.81375 1.14692 1.10659 1.07584 1.29261 0.95083 0.91667 0.93115 1.18874 0.78170 1.07374 0.85779 1.45546 1.06908 1.73192 1.11435 1.20272 0.82129 0.75622 0.90155 1.90752 1.55681 1.50271 1.46564 1.21009 0.80026 1.05869 0.94231 1.44542 1.06503 1.77003 1.10098 1.15917 0.81784 0.78030 0.83945 1.90933 1.68333 1.57613 1.32517 1.42055 1.04229 1.71766 1.13088 1.17119 0.94757 1.03688 0.85656 1.20807 0.94267 0.96398 0.98622 1.21103 1.03244 1.08113 0.91528 1.19890 0.92149 0.95060 0.87446 1.83959 1.38462 1.62631 1.28957 1.21866 1.02473 1.28818 0.95593 0.87623 1.26600 1.02928 0.99090 0.93619 1.70204 1.41775 1.45488 0.98673 0.84571 0.75174 0.77355 0.79015 1.19044 1.19914 1.17243 1.20275 0.94978 1.06382 0.99273 1.20886 0.99144 0.98711 0.90434 0.84693 0.84643 0.74145 0.86992 0.87225 0.74487 0.73996 0.82490 0.85129 0.91995 0.87047 0.84504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -6.69 18.54 20.01 0.37 -6.32 16 2 C 0.23 1.39 15.55 89.44 1.39 2.78 16 3 C 0.22 -0.02 6.15 84.58 0.52 0.50 16 4 N -0.72 -1.10 5.54 -472.12 -2.61 -3.71 16 5 C 0.53 3.79 7.90 87.66 0.69 4.48 16 6 O -0.55 -7.14 15.67 -3.03 -0.05 -7.19 16 7 C 0.12 1.12 6.15 85.63 0.53 1.65 16 8 N -0.72 -10.69 5.53 -482.28 -2.67 -13.36 16 9 C 0.70 16.72 8.41 179.05 1.51 18.22 16 10 O -0.61 -19.82 13.78 -3.99 -0.05 -19.88 16 11 N -0.66 -15.07 5.35 -317.04 -1.69 -16.76 16 12 C 0.08 2.64 6.30 38.16 0.24 2.88 16 13 C -0.08 -2.60 9.96 22.38 0.22 -2.38 16 14 C -0.22 -9.21 9.16 22.38 0.20 -9.01 16 15 C 0.11 5.26 6.65 22.59 0.15 5.41 16 16 O -0.23 -14.11 9.76 -22.98 -0.22 -14.34 16 17 C -0.41 -23.73 9.48 67.91 0.64 -23.09 16 18 H 0.11 5.47 5.20 -2.91 -0.02 5.46 16 19 C -0.03 -1.43 5.49 84.82 0.47 -0.97 16 20 N -0.92 -56.96 13.67 21.61 0.30 -56.66 16 21 Si 1.02 42.46 29.55 68.60 2.03 44.49 16 22 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 23 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 24 H -0.25 -9.45 7.11 99.48 0.71 -8.75 16 25 C -0.19 -8.54 9.99 22.38 0.22 -8.32 16 26 C -0.07 -2.73 8.69 22.38 0.19 -2.53 16 27 H 0.14 -0.31 8.14 -2.39 -0.02 -0.33 16 28 H 0.14 -0.33 8.14 -2.39 -0.02 -0.35 16 29 H 0.42 -0.63 8.45 -92.71 -0.78 -1.42 16 30 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.42 4.93 7.46 -92.70 -0.69 4.24 16 33 H 0.42 6.16 8.84 -92.72 -0.82 5.34 16 34 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 35 H 0.13 5.41 5.63 -2.91 -0.02 5.39 16 36 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 37 H 0.11 5.06 8.06 -2.91 -0.02 5.04 16 38 H 0.14 5.09 6.22 -2.91 -0.02 5.07 16 Total: -1.00 -85.83 347.35 1.25 -84.58 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: -1.12 Total: 19.52 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: 6.98 Total: -10.37 kcal Atomic # 7 Polarization: -90.50 SS G_CDS: -6.31 Total: -96.81 kcal Atomic # 8 Polarization: -41.08 SS G_CDS: -0.33 Total: -41.40 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -85.83 1.25 -84.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326604770.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.369 kcal (2) G-P(sol) polarization free energy of solvation -85.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds