Wall clock time and date at job start Tue Mar 31 2020 12:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38315 * 120.34945 * 2 1 4 4 C 1.37705 * 120.53846 * 180.16229 * 3 2 1 5 5 C 1.39591 * 121.05586 * 0.02562 * 4 3 2 6 6 C 1.38882 * 117.80390 * 359.69391 * 5 4 3 7 7 C 1.38026 * 120.35211 * 180.02562 * 2 1 3 8 8 S 1.77436 * 108.28572 * 180.75522 * 6 5 4 9 9 C 1.83296 * 96.61202 * 15.16595 * 8 6 5 10 10 H 1.09005 * 111.13414 * 93.13107 * 9 8 6 11 11 C 1.50693 * 111.10271 * 217.20948 * 9 8 6 12 12 O 1.20830 * 119.99754 * 81.69226 * 11 9 8 13 13 O 1.34230 * 120.00157 * 261.69654 * 11 9 8 14 14 C 1.45204 * 116.99809 * 179.97438 * 13 11 9 15 15 C 1.52997 * 109.46776 * 179.97438 * 14 13 11 16 16 C 1.50698 * 115.55098 * 65.11009 * 15 14 13 17 17 H 1.08005 * 120.00138 * 266.10819 * 16 15 14 18 18 C 1.37875 * 120.00404 * 86.11033 * 16 15 14 19 19 N 1.31513 * 119.99908 * 353.70356 * 18 16 15 20 20 Si 1.86796 * 120.00225 * 173.70703 * 18 16 15 21 21 H 1.48503 * 109.47430 * 59.99778 * 20 18 16 22 22 H 1.48500 * 109.47335 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47167 * 299.99553 * 20 18 16 24 24 C 1.53000 * 117.50077 * 279.43326 * 15 14 13 25 25 C 1.53004 * 117.49954 * 210.77396 * 15 14 13 26 26 C 1.50882 * 126.83107 * 179.66604 * 5 4 3 27 27 H 1.09003 * 109.46639 * 90.00270 * 1 2 3 28 28 H 1.09002 * 109.46953 * 209.99750 * 1 2 3 29 29 H 1.08997 * 109.47199 * 329.99870 * 1 2 3 30 30 H 1.08006 * 119.73523 * 0.18492 * 3 2 1 31 31 H 1.08001 * 119.47090 * 180.02562 * 4 3 2 32 32 H 1.07998 * 119.92231 * 359.97438 * 7 2 1 33 33 H 1.08994 * 109.47027 * 60.00005 * 14 13 11 34 34 H 1.08996 * 109.47050 * 299.99803 * 14 13 11 35 35 H 0.96998 * 120.00208 * 179.97438 * 19 18 16 36 36 H 1.09004 * 117.49945 * 0.02562 * 24 15 14 37 37 H 1.09001 * 117.49967 * 145.01843 * 24 15 14 38 38 H 1.08996 * 117.50395 * 214.97674 * 25 15 14 39 39 H 1.09006 * 117.49664 * 0.02562 * 25 15 14 40 40 H 1.09004 * 109.27397 * 39.08816 * 26 5 4 41 41 H 1.08995 * 109.21697 * 279.60430 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2060 1.1936 0.0000 4 6 3.5830 1.1981 -0.0034 5 6 4.3071 0.0047 -0.0074 6 6 3.5928 -1.1864 -0.0013 7 6 2.2046 -1.1911 -0.0005 8 16 4.7514 -2.5302 0.0140 9 6 6.2181 -1.5389 0.4890 10 1 6.3586 -1.5381 1.5700 11 6 7.4564 -2.0304 -0.2152 12 8 7.6844 -1.6827 -1.3497 13 8 8.3061 -2.8546 0.4178 14 6 9.4778 -3.2884 -0.3220 15 6 10.3213 -4.2146 0.5562 16 6 9.6736 -5.5226 0.9311 17 1 9.1337 -5.6106 1.8624 18 6 9.7702 -6.6072 0.0853 19 7 10.3188 -6.4685 -1.1018 20 14 9.1216 -8.2736 0.6255 21 1 7.6681 -8.1701 0.9116 22 1 9.3442 -9.2659 -0.4566 23 1 9.8376 -8.7098 1.8512 24 6 11.2453 -3.5628 1.5869 25 6 11.8350 -4.2142 0.3335 26 6 5.8087 -0.1422 -0.0184 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 1.6673 2.1298 0.0030 31 1 4.1113 2.1402 -0.0029 32 1 1.6691 -2.1289 -0.0005 33 1 10.0703 -2.4189 -0.6065 34 1 9.1640 -3.8233 -1.2184 35 1 10.3871 -7.2315 -1.6967 36 1 11.2519 -2.4741 1.6396 37 1 11.3849 -4.0802 2.5361 38 1 12.3625 -5.1598 0.4586 39 1 12.2300 -3.5537 -0.4385 40 1 6.2493 0.6184 0.6263 41 1 6.1749 -0.0073 -1.0361 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327088514.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:41 Heat of formation + Delta-G solvation = -38.587210 kcal Electronic energy + Delta-G solvation = -23284.946585 eV Core-core repulsion = 19835.554712 eV Total energy + Delta-G solvation = -3449.391873 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 4.11 seconds Orbital eigenvalues (eV) -40.13455 -39.56299 -36.97636 -35.55320 -34.99378 -31.97823 -31.69725 -31.05153 -27.98839 -26.60393 -25.30326 -24.15807 -23.29872 -21.30267 -21.08530 -20.24982 -19.30495 -17.78699 -17.35201 -16.51309 -16.03325 -15.82711 -15.62023 -15.40451 -14.70316 -14.53737 -14.22099 -13.91714 -13.86490 -13.37765 -13.16151 -12.93872 -12.73595 -12.43229 -12.24306 -12.17582 -12.01366 -11.65187 -11.50930 -11.22984 -10.97654 -10.88696 -10.58460 -10.40152 -10.30476 -10.20444 -9.96266 -9.79050 -9.61207 -8.87032 -8.82727 -8.48220 -8.25533 -7.52931 -6.08472 -4.14157 0.87272 1.04942 1.13204 2.01450 2.83188 2.98641 3.31218 3.35643 3.37787 3.38579 4.15631 4.38587 4.41349 4.60414 4.63656 4.83166 4.94061 5.03941 5.07747 5.21435 5.29533 5.30486 5.33409 5.39884 5.48874 5.62752 5.69563 5.85117 5.90836 6.00846 6.10295 6.17772 6.27353 6.28996 6.45493 6.57395 6.64859 6.68765 6.99306 7.09574 7.31402 7.42084 7.85152 8.18574 8.36688 8.87621 9.52276 11.00863 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.019567 B = 0.003097 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.633718 B = 9039.696133 C =10049.362487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.072 4.072 3 C -0.122 4.122 4 C -0.088 4.088 5 C -0.105 4.105 6 C -0.082 4.082 7 C -0.086 4.086 8 S -0.074 6.074 9 C -0.064 4.064 10 H 0.136 0.864 11 C 0.476 3.524 12 O -0.501 6.501 13 O -0.327 6.327 14 C 0.115 3.885 15 C 0.037 3.963 16 C -0.493 4.493 17 H 0.063 0.937 18 C 0.070 3.930 19 N -0.881 5.881 20 Si 0.892 3.108 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.205 4.205 25 C -0.143 4.143 26 C -0.081 4.081 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.042 0.958 34 H 0.078 0.922 35 H 0.262 0.738 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.098 0.902 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.152 15.118 2.914 21.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.074 4.074 3 C -0.142 4.142 4 C -0.108 4.108 5 C -0.111 4.111 6 C -0.195 4.195 7 C -0.110 4.110 8 S 0.170 5.830 9 C -0.193 4.193 10 H 0.154 0.846 11 C 0.316 3.684 12 O -0.391 6.391 13 O -0.242 6.242 14 C 0.042 3.958 15 C 0.036 3.964 16 C -0.530 4.530 17 H 0.081 0.919 18 C -0.134 4.134 19 N -0.518 5.518 20 Si 0.720 3.280 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.201 1.201 24 C -0.242 4.242 25 C -0.180 4.180 26 C -0.118 4.118 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.144 0.856 31 H 0.143 0.857 32 H 0.146 0.854 33 H 0.060 0.940 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.084 0.916 40 H 0.116 0.884 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -14.986 13.725 2.179 20.438 hybrid contribution -0.070 0.323 0.249 0.414 sum -15.056 14.048 2.427 20.735 Atomic orbital electron populations 1.20772 0.90532 1.03003 1.02566 1.19820 0.96094 0.92547 0.98969 1.20820 0.93640 0.97766 1.01968 1.20756 0.93840 0.96613 0.99571 1.20727 0.94032 0.93553 1.02745 1.22233 0.96834 0.96015 1.04401 1.20265 0.90699 0.98384 1.01693 1.86695 0.99761 1.09792 1.86724 1.23586 0.93112 0.97289 1.05316 0.84559 1.22192 0.83845 0.77344 0.85016 1.90631 1.74509 1.55611 1.18323 1.86523 1.34223 1.57056 1.46383 1.23038 0.81772 0.95449 0.95500 1.18766 0.88029 0.94105 0.95482 1.20350 1.34376 0.92882 1.05416 0.91859 1.25009 0.94757 0.98970 0.94622 1.69983 1.43694 1.30956 1.07127 0.86647 0.79646 0.83440 0.78288 1.19995 1.21232 1.20100 1.23022 1.09365 0.97156 0.94701 1.22543 0.97564 1.00727 0.97201 1.20905 0.91638 0.94088 1.05193 0.90914 0.91289 0.91303 0.85587 0.85739 0.85409 0.94000 0.90328 0.92791 0.91535 0.89988 0.89312 0.91599 0.88382 0.86885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.03 36.01 0.36 -0.35 16 2 C -0.07 -0.68 5.88 -104.67 -0.62 -1.29 16 3 C -0.12 -1.08 9.67 -39.75 -0.38 -1.47 16 4 C -0.09 -0.87 9.97 -39.27 -0.39 -1.26 16 5 C -0.10 -1.28 5.98 -103.79 -0.62 -1.90 16 6 C -0.08 -1.09 6.48 -39.13 -0.25 -1.35 16 7 C -0.09 -0.98 9.73 -39.44 -0.38 -1.36 16 8 S -0.07 -1.16 22.54 -107.50 -2.42 -3.58 16 9 C -0.06 -0.95 3.94 -27.29 -0.11 -1.06 16 10 H 0.14 1.77 8.14 -51.93 -0.42 1.34 16 11 C 0.48 9.12 7.19 36.00 0.26 9.38 16 12 O -0.50 -10.54 15.53 -18.75 -0.29 -10.83 16 13 O -0.33 -7.14 10.16 -39.26 -0.40 -7.54 16 14 C 0.12 2.72 5.29 37.16 0.20 2.92 16 15 C 0.04 0.91 1.62 -155.66 -0.25 0.65 16 16 C -0.49 -13.45 8.77 -34.44 -0.30 -13.76 16 17 H 0.06 1.73 7.82 -52.48 -0.41 1.32 16 18 C 0.07 1.91 5.38 -17.82 -0.10 1.82 16 19 N -0.88 -24.89 12.88 55.43 0.71 -24.18 16 20 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 C -0.21 -4.41 9.96 -26.69 -0.27 -4.67 16 25 C -0.14 -3.28 9.37 -26.69 -0.25 -3.53 16 26 C -0.08 -1.01 5.82 -27.20 -0.16 -1.17 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 29 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 30 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 31 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.04 0.91 8.08 -51.93 -0.42 0.49 16 34 H 0.08 2.06 8.13 -51.93 -0.42 1.64 16 35 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.08 1.73 8.14 -51.93 -0.42 1.30 16 38 H 0.09 2.15 8.14 -51.93 -0.42 1.72 16 39 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 40 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.11 1.56 6.92 -51.93 -0.36 1.20 16 LS Contribution 363.68 15.07 5.48 5.48 Total: -1.00 -30.51 363.68 -11.02 -41.54 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -5.82 Total: 1.31 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -3.27 Total: -18.40 kcal Atomic # 7 Polarization: -24.89 SS G_CDS: 0.71 Total: -24.18 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.69 Total: -18.37 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.16 SS G_CDS: -2.42 Total: -3.58 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.51 -11.02 -41.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327088514.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.948 kcal (2) G-P(sol) polarization free energy of solvation -30.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.11 seconds