Wall clock time and date at job start Tue Mar 31 2020 12:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38315 * 120.34945 * 2 1 4 4 C 1.37705 * 120.53846 * 180.16229 * 3 2 1 5 5 C 1.39591 * 121.05586 * 0.02562 * 4 3 2 6 6 C 1.38882 * 117.80390 * 359.69391 * 5 4 3 7 7 C 1.38026 * 120.35211 * 180.02562 * 2 1 3 8 8 S 1.77436 * 108.28572 * 180.75522 * 6 5 4 9 9 C 1.83296 * 96.61202 * 15.16595 * 8 6 5 10 10 H 1.09005 * 111.13414 * 93.13107 * 9 8 6 11 11 C 1.50693 * 111.10271 * 217.20948 * 9 8 6 12 12 O 1.20830 * 119.99754 * 81.69226 * 11 9 8 13 13 O 1.34230 * 120.00157 * 261.69654 * 11 9 8 14 14 C 1.45204 * 116.99809 * 179.97438 * 13 11 9 15 15 C 1.52997 * 109.46776 * 179.97438 * 14 13 11 16 16 C 1.50698 * 115.55098 * 65.11009 * 15 14 13 17 17 H 1.08005 * 120.00138 * 266.10819 * 16 15 14 18 18 C 1.37875 * 120.00404 * 86.11033 * 16 15 14 19 19 N 1.31513 * 119.99908 * 353.70356 * 18 16 15 20 20 Si 1.86796 * 120.00225 * 173.70703 * 18 16 15 21 21 H 1.48503 * 109.47430 * 59.99778 * 20 18 16 22 22 H 1.48500 * 109.47335 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47167 * 299.99553 * 20 18 16 24 24 C 1.53000 * 117.50077 * 279.43326 * 15 14 13 25 25 C 1.53004 * 117.49954 * 210.77396 * 15 14 13 26 26 C 1.50882 * 126.83107 * 179.66604 * 5 4 3 27 27 H 1.09003 * 109.46639 * 90.00270 * 1 2 3 28 28 H 1.09002 * 109.46953 * 209.99750 * 1 2 3 29 29 H 1.08997 * 109.47199 * 329.99870 * 1 2 3 30 30 H 1.08006 * 119.73523 * 0.18492 * 3 2 1 31 31 H 1.08001 * 119.47090 * 180.02562 * 4 3 2 32 32 H 1.07998 * 119.92231 * 359.97438 * 7 2 1 33 33 H 1.08994 * 109.47027 * 60.00005 * 14 13 11 34 34 H 1.08996 * 109.47050 * 299.99803 * 14 13 11 35 35 H 0.96998 * 120.00208 * 179.97438 * 19 18 16 36 36 H 1.09004 * 117.49945 * 0.02562 * 24 15 14 37 37 H 1.09001 * 117.49967 * 145.01843 * 24 15 14 38 38 H 1.08996 * 117.50395 * 214.97674 * 25 15 14 39 39 H 1.09006 * 117.49664 * 0.02562 * 25 15 14 40 40 H 1.09004 * 109.27397 * 39.08816 * 26 5 4 41 41 H 1.08995 * 109.21697 * 279.60430 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2060 1.1936 0.0000 4 6 3.5830 1.1981 -0.0034 5 6 4.3071 0.0047 -0.0074 6 6 3.5928 -1.1864 -0.0013 7 6 2.2046 -1.1911 -0.0005 8 16 4.7514 -2.5302 0.0140 9 6 6.2181 -1.5389 0.4890 10 1 6.3586 -1.5381 1.5700 11 6 7.4564 -2.0304 -0.2152 12 8 7.6844 -1.6827 -1.3497 13 8 8.3061 -2.8546 0.4178 14 6 9.4778 -3.2884 -0.3220 15 6 10.3213 -4.2146 0.5562 16 6 9.6736 -5.5226 0.9311 17 1 9.1337 -5.6106 1.8624 18 6 9.7702 -6.6072 0.0853 19 7 10.3188 -6.4685 -1.1018 20 14 9.1216 -8.2736 0.6255 21 1 7.6681 -8.1701 0.9116 22 1 9.3442 -9.2659 -0.4566 23 1 9.8376 -8.7098 1.8512 24 6 11.2453 -3.5628 1.5869 25 6 11.8350 -4.2142 0.3335 26 6 5.8087 -0.1422 -0.0184 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 1.6673 2.1298 0.0030 31 1 4.1113 2.1402 -0.0029 32 1 1.6691 -2.1289 -0.0005 33 1 10.0703 -2.4189 -0.6065 34 1 9.1640 -3.8233 -1.2184 35 1 10.3871 -7.2315 -1.6967 36 1 11.2519 -2.4741 1.6396 37 1 11.3849 -4.0802 2.5361 38 1 12.3625 -5.1598 0.4586 39 1 12.2300 -3.5537 -0.4385 40 1 6.2493 0.6184 0.6263 41 1 6.1749 -0.0073 -1.0361 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327088514.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:37 Heat of formation + Delta-G solvation = -52.091582 kcal Electronic energy + Delta-G solvation = -23285.532178 eV Core-core repulsion = 19835.554712 eV Total energy + Delta-G solvation = -3449.977466 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 3.50 seconds Orbital eigenvalues (eV) -41.65572 -40.47711 -38.73079 -37.18577 -36.06246 -34.05204 -32.57838 -31.88202 -29.28594 -28.03079 -27.22583 -25.18051 -24.19089 -23.00803 -22.14656 -21.51492 -21.22912 -19.14352 -18.76095 -18.20540 -17.53614 -17.14372 -16.66973 -16.59671 -16.45956 -15.73286 -15.70345 -15.06062 -14.79412 -14.57537 -14.34708 -14.14803 -13.96778 -13.64489 -13.61552 -13.48636 -13.01264 -12.95848 -12.87420 -12.84070 -12.45048 -12.37825 -12.11224 -12.05182 -11.92769 -11.77974 -11.49823 -11.30256 -10.81968 -10.69559 -10.51643 -10.11926 -9.62317 -8.65589 -8.17199 -6.28376 -0.22282 0.12975 0.29784 0.94040 1.38015 1.40114 1.41094 1.48405 1.50552 2.39849 2.58405 3.10006 3.11740 3.26455 3.52152 3.69186 3.80514 3.86588 4.00313 4.08713 4.29545 4.32190 4.34146 4.42577 4.50668 4.52706 4.61377 4.69211 4.77307 4.85393 4.88845 4.95052 4.95736 5.16619 5.20005 5.26748 5.34284 5.36980 5.53009 5.56683 5.60009 5.71684 5.92229 6.31870 6.58591 6.76796 7.40704 8.91395 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.019567 B = 0.003097 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.633718 B = 9039.696133 C =10049.362487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.070 4.070 3 C -0.115 4.115 4 C -0.087 4.087 5 C -0.119 4.119 6 C -0.096 4.096 7 C -0.101 4.101 8 S -0.143 6.143 9 C -0.050 4.050 10 H 0.157 0.843 11 C 0.476 3.524 12 O -0.524 6.524 13 O -0.339 6.339 14 C 0.128 3.872 15 C 0.001 3.999 16 C -0.508 4.508 17 H 0.054 0.946 18 C 0.024 3.976 19 N -0.908 5.908 20 Si 0.949 3.051 21 H -0.275 1.275 22 H -0.283 1.283 23 H -0.266 1.266 24 C -0.176 4.176 25 C -0.144 4.144 26 C -0.074 4.074 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.161 0.839 31 H 0.152 0.848 32 H 0.131 0.869 33 H 0.058 0.942 34 H 0.040 0.960 35 H 0.262 0.738 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.130 0.870 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.830 17.597 4.118 24.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.072 4.072 3 C -0.135 4.135 4 C -0.106 4.106 5 C -0.124 4.124 6 C -0.208 4.208 7 C -0.125 4.125 8 S 0.100 5.900 9 C -0.179 4.179 10 H 0.174 0.826 11 C 0.317 3.683 12 O -0.414 6.414 13 O -0.254 6.254 14 C 0.054 3.946 15 C 0.001 3.999 16 C -0.546 4.546 17 H 0.072 0.928 18 C -0.176 4.176 19 N -0.546 5.546 20 Si 0.774 3.226 21 H -0.201 1.201 22 H -0.209 1.209 23 H -0.191 1.191 24 C -0.213 4.213 25 C -0.181 4.181 26 C -0.111 4.111 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.107 0.893 30 H 0.179 0.821 31 H 0.170 0.830 32 H 0.149 0.851 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.148 0.852 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.682 16.221 3.397 23.514 hybrid contribution 0.317 -0.350 -0.140 0.492 sum -16.365 15.871 3.256 23.028 Atomic orbital electron populations 1.20850 0.88223 1.04205 1.03485 1.20223 0.97736 0.91872 0.97355 1.21289 0.93437 0.98952 0.99834 1.21112 0.94466 0.96677 0.98373 1.20811 0.93636 0.94102 1.03876 1.22192 0.97106 0.94551 1.06976 1.20515 0.90094 0.99711 1.02160 1.86803 1.02176 1.13187 1.87789 1.23624 0.90224 0.98220 1.05847 0.82555 1.22939 0.84255 0.76192 0.84945 1.90611 1.75117 1.56287 1.19411 1.86519 1.34341 1.57945 1.46568 1.22649 0.82484 0.95463 0.93975 1.18856 0.88881 0.94162 0.98039 1.20621 1.34426 0.94492 1.05051 0.92798 1.25701 0.95134 1.02124 0.94659 1.70085 1.44913 1.31629 1.07926 0.85753 0.78918 0.79684 0.78213 1.20086 1.20863 1.19067 1.23036 1.05763 0.98620 0.93832 1.22485 0.96302 1.00530 0.98813 1.20887 0.92413 0.93027 1.04781 0.89991 0.90971 0.89312 0.82149 0.82989 0.85124 0.92420 0.94182 0.92944 0.88725 0.89602 0.91145 0.90172 0.85228 0.88528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.03 71.24 0.71 -0.33 16 2 C -0.07 -1.11 5.88 -19.89 -0.12 -1.23 16 3 C -0.12 -1.60 9.67 22.16 0.21 -1.39 16 4 C -0.09 -1.43 9.97 22.47 0.22 -1.21 16 5 C -0.12 -2.73 5.98 -19.33 -0.12 -2.84 16 6 C -0.10 -2.53 6.48 22.56 0.15 -2.38 16 7 C -0.10 -2.20 9.73 22.36 0.22 -1.98 16 8 S -0.14 -4.66 22.54 -56.49 -1.27 -5.94 16 9 C -0.05 -1.50 3.94 30.23 0.12 -1.39 16 10 H 0.16 3.96 8.14 -2.38 -0.02 3.94 16 11 C 0.48 18.60 7.19 71.23 0.51 19.11 16 12 O -0.52 -22.67 15.53 21.95 0.34 -22.33 16 13 O -0.34 -15.08 10.16 -51.42 -0.52 -15.60 16 14 C 0.13 6.16 5.29 71.98 0.38 6.54 16 15 C 0.00 0.05 1.62 -52.93 -0.09 -0.03 16 16 C -0.51 -28.31 8.77 25.60 0.22 -28.08 16 17 H 0.05 3.01 7.82 -2.91 -0.02 2.99 16 18 C 0.02 1.36 5.38 84.65 0.46 1.82 16 19 N -0.91 -52.67 12.88 21.45 0.28 -52.40 16 20 Si 0.95 44.27 29.54 68.60 2.03 46.30 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 22 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 24 C -0.18 -7.30 9.96 30.62 0.30 -6.99 16 25 C -0.14 -6.59 9.37 30.62 0.29 -6.30 16 26 C -0.07 -1.76 5.82 30.29 0.18 -1.59 16 27 H 0.08 0.66 8.14 -2.39 -0.02 0.65 16 28 H 0.07 0.65 8.09 -2.39 -0.02 0.63 16 29 H 0.09 0.51 8.09 -2.39 -0.02 0.49 16 30 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 31 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 32 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 33 H 0.06 2.54 8.08 -2.39 -0.02 2.52 16 34 H 0.04 2.20 8.13 -2.39 -0.02 2.18 16 35 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 36 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 37 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 38 H 0.07 3.45 8.14 -2.39 -0.02 3.43 16 39 H 0.08 3.38 8.14 -2.38 -0.02 3.36 16 40 H 0.13 2.20 8.14 -2.38 -0.02 2.19 16 41 H 0.10 2.64 6.92 -2.39 -0.02 2.63 16 Total: -1.00 -68.31 363.68 5.53 -62.77 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 1.03 Total: 15.46 kcal Atomic # 6 Polarization: -31.93 SS G_CDS: 3.66 Total: -28.27 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: 0.28 Total: -52.40 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: -0.18 Total: -37.94 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: -4.66 SS G_CDS: -1.27 Total: -5.94 kcal Total: -68.31 5.53 -62.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327088514.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.683 kcal (2) G-P(sol) polarization free energy of solvation -68.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.50 seconds