Wall clock time and date at job start Tue Mar 31 2020 11:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42897 * 109.47013 * 2 1 4 4 C 1.42900 * 113.99948 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.46958 * 30.00515 * 4 3 2 6 6 C 1.52997 * 109.47525 * 270.00019 * 4 3 2 7 7 C 1.50707 * 109.47052 * 149.99899 * 4 3 2 8 8 N 1.29938 * 126.28626 * 45.02622 * 7 4 3 9 9 O 1.21303 * 110.25257 * 179.97438 * 8 7 4 10 10 C 1.33641 * 109.80859 * 0.02562 * 9 8 7 11 11 C 1.50703 * 126.55383 * 179.97438 * 10 9 8 12 12 S 1.81400 * 109.47439 * 270.02956 * 11 10 9 13 13 O 1.42098 * 108.57658 * 294.48276 * 12 11 10 14 14 O 1.42103 * 108.57839 * 65.51032 * 12 11 10 15 15 C 1.81399 * 101.92029 * 179.97438 * 12 11 10 16 16 C 1.53003 * 109.47035 * 179.97438 * 15 12 11 17 17 C 1.50699 * 109.47332 * 179.97438 * 16 15 12 18 18 H 1.08003 * 119.99905 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99759 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00215 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99483 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46967 * 90.00271 * 21 19 17 23 23 H 1.48506 * 109.46742 * 210.00054 * 21 19 17 24 24 H 1.48499 * 109.47361 * 330.00204 * 21 19 17 25 25 N 1.31134 * 106.89776 * 359.97438 * 10 9 8 26 26 H 1.08995 * 109.47479 * 59.99848 * 1 2 3 27 27 H 1.09007 * 109.47196 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46865 * 300.00193 * 1 2 3 29 29 H 1.08994 * 109.47129 * 239.99963 * 2 1 3 30 30 H 1.08999 * 109.46817 * 119.99862 * 2 1 3 31 31 H 1.09003 * 109.47060 * 60.00011 * 6 4 3 32 32 H 1.08998 * 109.47417 * 179.97438 * 6 4 3 33 33 H 1.08996 * 109.46824 * 299.99862 * 6 4 3 34 34 H 1.09008 * 109.46524 * 30.02892 * 11 10 9 35 35 H 1.09001 * 109.47340 * 150.02303 * 11 10 9 36 36 H 1.08990 * 109.47191 * 299.99672 * 15 12 11 37 37 H 1.09000 * 109.46976 * 59.99948 * 15 12 11 38 38 H 1.09000 * 109.47132 * 300.00551 * 16 15 12 39 39 H 1.09000 * 109.46825 * 59.99771 * 16 15 12 40 40 H 0.97006 * 119.99658 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.8635 0.6015 -0.5131 6 6 3.9387 1.5006 1.4432 7 6 3.8347 2.7263 -0.7099 8 7 3.2987 3.8998 -0.5545 9 8 3.8489 4.7107 -1.2694 10 6 4.8172 4.1132 -1.9704 11 6 5.7348 4.7670 -2.9713 12 16 4.9861 4.6857 -4.6215 13 8 4.9091 3.3231 -5.0171 14 8 3.8052 5.4763 -4.6224 15 6 6.2364 5.5145 -5.6415 16 6 5.7698 5.5417 -7.0984 17 6 6.8082 6.2307 -7.9457 18 1 7.7109 6.6108 -7.4907 19 6 6.6062 6.3749 -9.3020 20 7 5.5072 5.9116 -9.8561 21 14 7.8938 7.2284 -10.3523 22 1 8.8664 6.2253 -10.8554 23 1 7.2317 7.8958 -11.5019 24 1 8.6068 8.2425 -9.5348 25 7 4.8163 2.8493 -1.6210 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.6466 0.5847 1.9571 32 1 5.0253 1.5862 1.4437 33 1 3.5061 2.3592 1.9567 34 1 5.8909 5.8096 -2.6940 35 1 6.6924 4.2463 -2.9806 36 1 6.3774 6.5350 -5.2857 37 1 7.1794 4.9721 -5.5724 38 1 5.6290 4.5210 -7.4540 39 1 4.8267 6.0838 -7.1677 40 1 5.3651 6.0134 -10.8102 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327953005.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:51 Heat of formation + Delta-G solvation = -52.049691 kcal Electronic energy + Delta-G solvation = -24205.693486 eV Core-core repulsion = 20344.868573 eV Total energy + Delta-G solvation = -3860.824913 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.113 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.87782 -38.91882 -36.70438 -36.20020 -35.73897 -34.24945 -33.96290 -32.26246 -31.28403 -30.42344 -29.48385 -25.72372 -25.45825 -23.72848 -23.15394 -21.89523 -21.16612 -18.88559 -18.31944 -17.91517 -17.22534 -17.00551 -16.10498 -16.07220 -15.87744 -15.78070 -15.63397 -14.67879 -14.55267 -13.95863 -13.81294 -13.61359 -13.43856 -13.10292 -12.58704 -12.54818 -12.42684 -12.21177 -12.15082 -11.85923 -11.78828 -11.74984 -11.69131 -11.46388 -11.25456 -11.22251 -11.12074 -11.02216 -10.47752 -10.43849 -10.14677 -10.01148 -9.74678 -9.23156 -8.53814 -6.15907 -4.22464 -0.04963 0.95954 1.87736 2.30027 2.78415 2.96929 3.24327 3.30874 3.32992 3.55497 3.64385 3.96744 4.17607 4.33284 4.38048 4.54391 4.64190 4.72649 4.79962 4.86987 4.98507 5.00929 5.13044 5.19401 5.23748 5.40421 5.41502 5.48997 5.53881 5.56344 5.62280 5.72255 5.81128 6.35178 6.71851 7.27356 7.31905 7.76121 7.87485 8.10847 8.81042 9.42564 10.94866 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.029432 B = 0.002504 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.104645 B =11178.680790 C =11622.229679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.373 6.373 4 C 0.181 3.819 5 H 0.097 0.903 6 C -0.168 4.168 7 C 0.166 3.834 8 N -0.349 5.349 9 O 0.097 5.903 10 C 0.189 3.811 11 C -0.544 4.544 12 S 2.393 3.607 13 O -0.920 6.920 14 O -0.926 6.926 15 C -0.559 4.559 16 C 0.027 3.973 17 C -0.523 4.523 18 H 0.063 0.937 19 C 0.058 3.942 20 N -0.888 5.888 21 Si 0.901 3.099 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 N -0.454 5.454 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.168 0.832 35 H 0.173 0.827 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.332 -8.453 21.690 23.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.292 6.292 4 C 0.122 3.878 5 H 0.115 0.885 6 C -0.226 4.226 7 C -0.108 4.108 8 N -0.053 5.053 9 O 0.033 5.967 10 C -0.032 4.032 11 C -0.666 4.666 12 S 2.572 3.428 13 O -0.917 6.917 14 O -0.922 6.922 15 C -0.693 4.693 16 C -0.012 4.012 17 C -0.562 4.562 18 H 0.081 0.919 19 C -0.145 4.145 20 N -0.526 5.526 21 Si 0.728 3.272 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 N -0.189 5.189 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.186 0.814 35 H 0.191 0.809 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.943 -9.015 21.974 23.933 hybrid contribution 1.725 0.722 -0.402 1.912 sum -1.218 -8.294 21.572 23.144 Atomic orbital electron populations 1.21747 0.93223 1.02446 1.03466 1.22629 0.96056 0.82874 1.00533 1.88007 1.18762 1.27403 1.95007 1.19977 0.82861 0.90228 0.94761 0.88488 1.22257 1.01974 1.03816 0.94559 1.25544 0.92705 0.95712 0.96817 1.74665 1.17361 1.01057 1.12205 1.85394 1.36410 1.35420 1.39462 1.27127 0.91779 0.87572 0.96706 1.29509 1.08451 1.09936 1.18711 1.09482 0.79393 0.77289 0.76598 1.93595 1.86343 1.33251 1.78535 1.93594 1.42998 1.71193 1.84461 1.30191 1.14349 1.12058 1.12710 1.19047 0.98398 0.99636 0.84080 1.20984 1.04462 1.38432 0.92341 0.91851 1.25071 0.95787 0.95532 0.98073 1.69957 1.25347 1.45284 1.12018 0.86451 0.81193 0.79616 0.79901 1.20444 1.21004 1.19714 1.71888 1.19741 1.15008 1.12286 0.91580 0.90777 0.91733 0.92712 0.92876 0.90707 0.90846 0.91051 0.81438 0.80913 0.85462 0.85479 0.94398 0.94382 0.92440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.28 37.16 0.38 -0.76 16 2 C 0.06 0.47 6.47 37.16 0.24 0.71 16 3 O -0.37 -4.52 9.97 -35.23 -0.35 -4.87 16 4 C 0.18 2.04 3.27 -27.88 -0.09 1.95 16 5 H 0.10 0.94 7.79 -51.92 -0.40 0.53 16 6 C -0.17 -1.41 9.51 37.16 0.35 -1.05 16 7 C 0.17 2.42 7.10 -156.38 -1.11 1.31 16 8 N -0.35 -5.49 12.16 30.90 0.38 -5.11 16 9 O 0.10 1.46 11.31 18.11 0.20 1.67 16 10 C 0.19 2.69 7.77 -13.05 -0.10 2.59 16 11 C -0.54 -5.77 6.43 36.01 0.23 -5.54 16 12 S 2.39 38.62 4.70 -107.50 -0.51 38.11 16 13 O -0.92 -18.21 18.10 -57.83 -1.05 -19.26 16 14 O -0.93 -18.09 18.10 -57.83 -1.05 -19.14 16 15 C -0.56 -9.21 5.74 37.16 0.21 -9.00 16 16 C 0.03 0.66 4.98 -27.88 -0.14 0.52 16 17 C -0.52 -13.75 9.11 -34.44 -0.31 -14.06 16 18 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 19 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 20 N -0.89 -25.85 13.29 55.43 0.74 -25.12 16 21 Si 0.90 20.56 29.54 -169.99 -5.02 15.53 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 24 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 25 N -0.45 -6.88 11.55 -9.87 -0.11 -6.99 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.43 8.08 -51.93 -0.42 0.02 16 30 H 0.05 0.34 7.87 -51.93 -0.41 -0.07 16 31 H 0.07 0.46 7.87 -51.93 -0.41 0.06 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.17 1.06 8.14 -51.92 -0.42 0.64 16 35 H 0.17 1.26 8.14 -51.92 -0.42 0.84 16 36 H 0.13 1.72 8.14 -51.93 -0.42 1.29 16 37 H 0.13 1.73 8.14 -51.92 -0.42 1.31 16 38 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 363.38 15.07 5.48 5.48 Total: -1.00 -37.18 363.38 -7.56 -44.73 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -5.83 Total: -3.19 kcal Atomic # 6 Polarization: -21.41 SS G_CDS: -0.43 Total: -21.84 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 1.00 Total: -37.22 kcal Atomic # 8 Polarization: -39.36 SS G_CDS: -2.24 Total: -41.60 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 38.62 SS G_CDS: -0.51 Total: 38.11 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.18 -7.56 -44.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327953005.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.318 kcal (2) G-P(sol) polarization free energy of solvation -37.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds