Wall clock time and date at job start Tue Mar 31 2020 11:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42897 * 109.47013 * 2 1 4 4 C 1.42900 * 113.99948 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.46958 * 30.00515 * 4 3 2 6 6 C 1.52997 * 109.47525 * 270.00019 * 4 3 2 7 7 C 1.50707 * 109.47052 * 149.99899 * 4 3 2 8 8 N 1.29938 * 126.28626 * 45.02622 * 7 4 3 9 9 O 1.21303 * 110.25257 * 179.97438 * 8 7 4 10 10 C 1.33641 * 109.80859 * 0.02562 * 9 8 7 11 11 C 1.50703 * 126.55383 * 179.97438 * 10 9 8 12 12 S 1.81400 * 109.47439 * 270.02956 * 11 10 9 13 13 O 1.42098 * 108.57658 * 294.48276 * 12 11 10 14 14 O 1.42103 * 108.57839 * 65.51032 * 12 11 10 15 15 C 1.81399 * 101.92029 * 179.97438 * 12 11 10 16 16 C 1.53003 * 109.47035 * 179.97438 * 15 12 11 17 17 C 1.50699 * 109.47332 * 179.97438 * 16 15 12 18 18 H 1.08003 * 119.99905 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99759 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00215 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99483 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46967 * 90.00271 * 21 19 17 23 23 H 1.48506 * 109.46742 * 210.00054 * 21 19 17 24 24 H 1.48499 * 109.47361 * 330.00204 * 21 19 17 25 25 N 1.31134 * 106.89776 * 359.97438 * 10 9 8 26 26 H 1.08995 * 109.47479 * 59.99848 * 1 2 3 27 27 H 1.09007 * 109.47196 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46865 * 300.00193 * 1 2 3 29 29 H 1.08994 * 109.47129 * 239.99963 * 2 1 3 30 30 H 1.08999 * 109.46817 * 119.99862 * 2 1 3 31 31 H 1.09003 * 109.47060 * 60.00011 * 6 4 3 32 32 H 1.08998 * 109.47417 * 179.97438 * 6 4 3 33 33 H 1.08996 * 109.46824 * 299.99862 * 6 4 3 34 34 H 1.09008 * 109.46524 * 30.02892 * 11 10 9 35 35 H 1.09001 * 109.47340 * 150.02303 * 11 10 9 36 36 H 1.08990 * 109.47191 * 299.99672 * 15 12 11 37 37 H 1.09000 * 109.46976 * 59.99948 * 15 12 11 38 38 H 1.09000 * 109.47132 * 300.00551 * 16 15 12 39 39 H 1.09000 * 109.46825 * 59.99771 * 16 15 12 40 40 H 0.97006 * 119.99658 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.8635 0.6015 -0.5131 6 6 3.9387 1.5006 1.4432 7 6 3.8347 2.7263 -0.7099 8 7 3.2987 3.8998 -0.5545 9 8 3.8489 4.7107 -1.2694 10 6 4.8172 4.1132 -1.9704 11 6 5.7348 4.7670 -2.9713 12 16 4.9861 4.6857 -4.6215 13 8 4.9091 3.3231 -5.0171 14 8 3.8052 5.4763 -4.6224 15 6 6.2364 5.5145 -5.6415 16 6 5.7698 5.5417 -7.0984 17 6 6.8082 6.2307 -7.9457 18 1 7.7109 6.6108 -7.4907 19 6 6.6062 6.3749 -9.3020 20 7 5.5072 5.9116 -9.8561 21 14 7.8938 7.2284 -10.3523 22 1 8.8664 6.2253 -10.8554 23 1 7.2317 7.8958 -11.5019 24 1 8.6068 8.2425 -9.5348 25 7 4.8163 2.8493 -1.6210 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.6466 0.5847 1.9571 32 1 5.0253 1.5862 1.4437 33 1 3.5061 2.3592 1.9567 34 1 5.8909 5.8096 -2.6940 35 1 6.6924 4.2463 -2.9806 36 1 6.3774 6.5350 -5.2857 37 1 7.1794 4.9721 -5.5724 38 1 5.6290 4.5210 -7.4540 39 1 4.8267 6.0838 -7.1677 40 1 5.3651 6.0134 -10.8102 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327953005.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:50 Heat of formation + Delta-G solvation = -83.003346 kcal Electronic energy + Delta-G solvation = -24207.035737 eV Core-core repulsion = 20344.868573 eV Total energy + Delta-G solvation = -3862.167164 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.113 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -46.98928 -39.72104 -38.11650 -37.28357 -37.13240 -35.84212 -35.23332 -33.11535 -33.02651 -31.13052 -30.53946 -27.57281 -26.37547 -24.83036 -23.83965 -23.51144 -22.26149 -20.13767 -19.55029 -19.00042 -18.74831 -18.05618 -17.43025 -17.24845 -17.02023 -16.82007 -16.61258 -16.45843 -15.77755 -15.16685 -14.68379 -14.58178 -14.41544 -14.29170 -13.72679 -13.70010 -13.57033 -13.22282 -13.18162 -13.12851 -13.02228 -12.91975 -12.88273 -12.71889 -12.63466 -12.48452 -12.25045 -12.16601 -12.06083 -12.03592 -11.69026 -11.26831 -10.88934 -10.79325 -10.60152 -8.21544 -6.35310 -1.33748 -0.12361 0.80845 1.25613 1.45645 1.47112 1.58021 1.74805 1.91230 2.41541 2.59658 2.67431 2.85930 3.02579 3.13082 3.47153 3.75058 3.83520 3.95889 4.07005 4.12149 4.14525 4.23621 4.24462 4.41306 4.42984 4.47272 4.56118 4.71065 4.84223 4.86194 4.94886 5.07432 5.20749 5.35550 5.36822 5.74195 5.99958 6.09423 6.78366 6.80675 7.35207 8.90840 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.029432 B = 0.002504 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.104645 B =11178.680790 C =11622.229679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.047 3.953 3 O -0.402 6.402 4 C 0.174 3.826 5 H 0.110 0.890 6 C -0.159 4.159 7 C 0.160 3.840 8 N -0.372 5.372 9 O 0.089 5.911 10 C 0.179 3.821 11 C -0.511 4.511 12 S 2.394 3.606 13 O -0.971 6.971 14 O -0.974 6.974 15 C -0.553 4.553 16 C 0.015 3.985 17 C -0.533 4.533 18 H 0.086 0.914 19 C -0.008 4.008 20 N -0.938 5.938 21 Si 0.974 3.026 22 H -0.272 1.272 23 H -0.289 1.289 24 H -0.253 1.253 25 N -0.469 5.469 26 H 0.046 0.954 27 H 0.098 0.902 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.223 0.777 35 H 0.219 0.781 36 H 0.165 0.835 37 H 0.164 0.836 38 H 0.004 0.996 39 H 0.005 0.995 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.389 -8.250 23.833 25.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.321 6.321 4 C 0.115 3.885 5 H 0.128 0.872 6 C -0.217 4.217 7 C -0.114 4.114 8 N -0.077 5.077 9 O 0.027 5.973 10 C -0.042 4.042 11 C -0.638 4.638 12 S 2.581 3.419 13 O -0.968 6.968 14 O -0.971 6.971 15 C -0.687 4.687 16 C -0.024 4.024 17 C -0.573 4.573 18 H 0.104 0.896 19 C -0.206 4.206 20 N -0.578 5.578 21 Si 0.798 3.202 22 H -0.198 1.198 23 H -0.215 1.215 24 H -0.176 1.176 25 N -0.204 5.204 26 H 0.065 0.935 27 H 0.116 0.884 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.118 0.882 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.240 0.760 35 H 0.236 0.764 36 H 0.183 0.817 37 H 0.182 0.818 38 H 0.023 0.977 39 H 0.023 0.977 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.233 -8.803 24.059 25.620 hybrid contribution 0.845 0.598 -0.952 1.406 sum 0.612 -8.205 23.107 24.528 Atomic orbital electron populations 1.21786 0.92899 1.03709 1.02440 1.22882 0.96400 0.81644 1.01907 1.87973 1.19289 1.29595 1.95238 1.20321 0.82822 0.89164 0.96225 0.87182 1.22219 1.02287 1.04560 0.92628 1.26267 0.92154 0.96545 0.96416 1.74651 1.18133 1.01713 1.13250 1.85363 1.36654 1.35539 1.39729 1.27741 0.91775 0.87683 0.96987 1.29317 1.08348 1.14102 1.12056 1.08800 0.78900 0.75670 0.78547 1.93538 1.87009 1.35277 1.80946 1.93541 1.45713 1.71653 1.86188 1.30001 1.15559 1.15263 1.07849 1.18883 0.97134 0.96995 0.89354 1.21587 1.05313 1.37486 0.92866 0.89567 1.26155 0.97934 0.96478 1.00071 1.70127 1.27944 1.47456 1.12284 0.85310 0.78303 0.78751 0.77857 1.19764 1.21470 1.17621 1.71906 1.20378 1.15517 1.12612 0.93483 0.88368 0.91851 0.92520 0.90222 0.88175 0.89978 0.92301 0.76022 0.76398 0.81675 0.81846 0.97725 0.97665 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 10.28 71.98 0.74 -1.44 16 2 C 0.05 0.74 6.47 71.98 0.47 1.21 16 3 O -0.40 -9.53 9.97 -148.98 -1.49 -11.01 16 4 C 0.17 3.72 3.27 29.85 0.10 3.82 16 5 H 0.11 1.98 7.79 -2.38 -0.02 1.96 16 6 C -0.16 -2.37 9.51 71.98 0.68 -1.68 16 7 C 0.16 4.54 7.10 138.47 0.98 5.53 16 8 N -0.37 -11.56 12.16 -60.33 -0.73 -12.30 16 9 O 0.09 2.59 11.31 74.85 0.85 3.44 16 10 C 0.18 4.71 7.77 88.38 0.69 5.39 16 11 C -0.51 -8.72 6.43 71.24 0.46 -8.26 16 12 S 2.39 75.30 4.70 -56.49 -0.27 75.04 16 13 O -0.97 -39.15 18.10 -127.37 -2.31 -41.45 16 14 O -0.97 -38.88 18.10 -127.37 -2.30 -41.18 16 15 C -0.55 -17.06 5.74 71.98 0.41 -16.64 16 16 C 0.01 0.74 4.98 29.85 0.15 0.89 16 17 C -0.53 -27.83 9.11 25.60 0.23 -27.60 16 18 H 0.09 3.98 7.74 -2.91 -0.02 3.96 16 19 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 20 N -0.94 -56.60 13.29 21.45 0.28 -56.32 16 21 Si 0.97 41.91 29.54 68.60 2.03 43.94 16 22 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 23 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 24 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 25 N -0.47 -13.50 11.55 -303.21 -3.50 -17.00 16 26 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.06 0.85 8.08 -2.39 -0.02 0.83 16 30 H 0.08 0.81 7.87 -2.39 -0.02 0.79 16 31 H 0.10 0.96 7.87 -2.39 -0.02 0.94 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.22 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.22 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.17 3.80 8.14 -2.40 -0.02 3.78 16 37 H 0.16 3.82 8.14 -2.39 -0.02 3.80 16 38 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 39 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 40 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 Total: -1.00 -87.56 363.38 -1.03 -88.59 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: 1.04 Total: 7.05 kcal Atomic # 6 Polarization: -44.16 SS G_CDS: 5.37 Total: -38.79 kcal Atomic # 7 Polarization: -81.66 SS G_CDS: -3.95 Total: -85.61 kcal Atomic # 8 Polarization: -84.96 SS G_CDS: -5.25 Total: -90.21 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Atomic # 16 Polarization: 75.30 SS G_CDS: -0.27 Total: 75.04 kcal Total: -87.56 -1.03 -88.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327953005.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.585 kcal (2) G-P(sol) polarization free energy of solvation -87.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds