Wall clock time and date at job start Tue Mar 31 2020 11:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.42902 * 114.00186 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.46855 * 330.00024 * 4 3 2 6 6 C 1.52996 * 109.46960 * 89.99675 * 4 3 2 7 7 C 1.50698 * 109.47139 * 209.99847 * 4 3 2 8 8 N 1.29951 * 126.28558 * 315.02192 * 7 4 3 9 9 O 1.21298 * 110.24927 * 179.97438 * 8 7 4 10 10 C 1.33643 * 109.81268 * 359.97438 * 9 8 7 11 11 C 1.50700 * 126.55601 * 179.97438 * 10 9 8 12 12 S 1.81402 * 109.47241 * 269.97796 * 11 10 9 13 13 O 1.42094 * 108.57737 * 294.48453 * 12 11 10 14 14 O 1.42102 * 108.57486 * 65.50906 * 12 11 10 15 15 C 1.81392 * 101.92202 * 179.97438 * 12 11 10 16 16 C 1.53004 * 109.47056 * 180.02562 * 15 12 11 17 17 C 1.50706 * 109.46983 * 180.02562 * 16 15 12 18 18 H 1.07996 * 120.00255 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99773 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00097 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00037 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46990 * 89.99847 * 21 19 17 23 23 H 1.48501 * 109.47275 * 210.00179 * 21 19 17 24 24 H 1.48506 * 109.47066 * 330.00087 * 21 19 17 25 25 N 1.31135 * 106.89471 * 359.77000 * 10 9 8 26 26 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 28 28 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 29 29 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 30 30 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 31 31 H 1.09005 * 109.47615 * 300.00241 * 6 4 3 32 32 H 1.09006 * 109.47596 * 60.00249 * 6 4 3 33 33 H 1.09000 * 109.47046 * 180.02562 * 6 4 3 34 34 H 1.09005 * 109.46955 * 29.97303 * 11 10 9 35 35 H 1.08998 * 109.47256 * 149.97467 * 11 10 9 36 36 H 1.09004 * 109.47559 * 299.99593 * 15 12 11 37 37 H 1.08999 * 109.47108 * 60.00037 * 15 12 11 38 38 H 1.08996 * 109.46979 * 299.99709 * 16 15 12 39 39 H 1.08999 * 109.47207 * 60.00005 * 16 15 12 40 40 H 0.96999 * 120.00064 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8635 0.6015 0.5129 6 6 3.9387 1.5005 -1.4433 7 6 3.8348 2.7262 0.7098 8 7 3.2982 3.8996 0.5550 9 8 3.8479 4.7104 1.2704 10 6 4.8164 4.1130 1.9712 11 6 5.7344 4.7669 2.9716 12 16 7.2192 5.3730 2.1240 13 8 7.9427 4.2568 1.6243 14 8 6.8386 6.4098 1.2299 15 6 8.1585 6.1060 3.4918 16 6 9.4715 6.6822 2.9576 17 6 10.2521 7.2907 4.0941 18 1 9.8518 7.2690 5.0969 19 6 11.4776 7.8750 3.8536 20 7 11.9654 7.9010 2.6325 21 14 12.4450 8.6298 5.2620 22 1 13.3319 7.6004 5.8610 23 1 13.2678 9.7552 4.7503 24 1 11.5041 9.1341 6.2945 25 7 4.8125 2.8481 1.6251 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.6465 0.5846 -1.9572 32 1 3.5060 2.3591 -1.9569 33 1 5.0253 1.5861 -1.4437 34 1 5.2194 5.6030 3.4449 35 1 6.0210 4.0396 3.7313 36 1 7.5722 6.9028 3.9495 37 1 8.3739 5.3397 4.2364 38 1 10.0581 5.8859 2.4998 39 1 9.2557 7.4486 2.2132 40 1 12.8273 8.3125 2.4633 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327953026.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:53 Heat of formation + Delta-G solvation = -52.242071 kcal Electronic energy + Delta-G solvation = -24144.606947 eV Core-core repulsion = 20283.773692 eV Total energy + Delta-G solvation = -3860.833255 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.113 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.87806 -38.94992 -36.71186 -36.20561 -35.74840 -34.25329 -33.96542 -32.28514 -31.28629 -30.43774 -29.48106 -25.72569 -25.44393 -23.72640 -23.21912 -21.89796 -21.16985 -18.84170 -18.37987 -17.92005 -17.25875 -16.98554 -16.13367 -16.05626 -15.90460 -15.76031 -15.66630 -14.69854 -14.55926 -13.96912 -13.80878 -13.61847 -13.43849 -13.11458 -12.59039 -12.54570 -12.42902 -12.26074 -12.11423 -11.86754 -11.80889 -11.76027 -11.69981 -11.48394 -11.28824 -11.21129 -11.12309 -11.02548 -10.48162 -10.44125 -10.18527 -10.01923 -9.74711 -9.23458 -8.54004 -6.16152 -4.22663 -0.05296 0.96036 1.87344 2.30311 2.75472 2.96173 3.24178 3.30785 3.32850 3.55374 3.64255 3.95464 4.16995 4.33012 4.37503 4.54945 4.62448 4.69884 4.77734 4.84445 4.92636 5.01453 5.13982 5.19138 5.26666 5.40037 5.42767 5.48224 5.48831 5.53682 5.64594 5.71264 5.80816 6.34934 6.67552 7.26932 7.31539 7.75897 7.87452 8.10576 8.80793 9.42343 10.94553 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.043499 B = 0.002334 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.536765 B =11994.334080 C =12118.446510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.375 6.375 4 C 0.183 3.817 5 H 0.097 0.903 6 C -0.172 4.172 7 C 0.166 3.834 8 N -0.349 5.349 9 O 0.097 5.903 10 C 0.189 3.811 11 C -0.544 4.544 12 S 2.394 3.606 13 O -0.920 6.920 14 O -0.926 6.926 15 C -0.559 4.559 16 C 0.027 3.973 17 C -0.523 4.523 18 H 0.063 0.937 19 C 0.058 3.942 20 N -0.888 5.888 21 Si 0.901 3.099 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.272 1.272 25 N -0.454 5.454 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.168 0.832 35 H 0.173 0.827 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.304 -13.980 -1.577 23.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.293 6.293 4 C 0.123 3.877 5 H 0.114 0.886 6 C -0.230 4.230 7 C -0.108 4.108 8 N -0.053 5.053 9 O 0.033 5.967 10 C -0.032 4.032 11 C -0.666 4.666 12 S 2.574 3.426 13 O -0.917 6.917 14 O -0.923 6.923 15 C -0.693 4.693 16 C -0.011 4.011 17 C -0.562 4.562 18 H 0.081 0.919 19 C -0.145 4.145 20 N -0.526 5.526 21 Si 0.729 3.271 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.197 1.197 25 N -0.189 5.189 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.186 0.814 35 H 0.191 0.809 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.748 -14.183 -3.164 24.518 hybrid contribution 0.491 0.341 1.783 1.880 sum -19.256 -13.841 -1.382 23.755 Atomic orbital electron populations 1.21739 0.93304 1.02400 1.03365 1.22613 0.95929 0.82997 1.00540 1.87993 1.18993 1.27265 1.95052 1.19975 0.82530 0.90132 0.95041 0.88553 1.22292 1.02518 1.03851 0.94339 1.25528 0.92759 0.95683 0.96784 1.74672 1.17577 1.00915 1.12146 1.85393 1.36176 1.35492 1.39617 1.27127 0.92488 0.87593 0.95959 1.29512 1.17354 1.12094 1.07645 1.09446 0.76539 0.76573 0.80085 1.93593 1.67989 1.52788 1.77372 1.93593 1.82149 1.56239 1.60289 1.30192 1.12397 1.11629 1.15107 1.19046 0.86980 0.97129 0.97994 1.20985 1.03255 1.38214 0.93778 0.91858 1.25070 0.97533 0.95906 0.95960 1.69954 1.19122 1.43923 1.19572 0.86449 0.79921 0.78895 0.81881 1.20457 1.21012 1.19725 1.71883 1.19353 1.15020 1.12673 0.90811 0.91825 0.91642 0.92750 0.92933 0.90673 0.90919 0.90412 0.81450 0.80944 0.85467 0.85483 0.94399 0.94378 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.28 37.16 0.38 -0.58 16 2 C 0.06 0.42 6.47 37.16 0.24 0.66 16 3 O -0.37 -4.22 9.97 -35.23 -0.35 -4.57 16 4 C 0.18 2.05 3.27 -27.89 -0.09 1.96 16 5 H 0.10 0.90 7.79 -51.93 -0.40 0.49 16 6 C -0.17 -1.66 9.51 37.16 0.35 -1.31 16 7 C 0.17 2.42 7.10 -156.38 -1.11 1.31 16 8 N -0.35 -5.48 12.16 30.90 0.38 -5.11 16 9 O 0.10 1.46 11.31 18.10 0.20 1.66 16 10 C 0.19 2.69 7.77 -13.05 -0.10 2.58 16 11 C -0.54 -5.75 6.43 36.01 0.23 -5.52 16 12 S 2.39 37.92 4.70 -107.50 -0.51 37.41 16 13 O -0.92 -17.85 18.10 -57.83 -1.05 -18.89 16 14 O -0.93 -17.75 18.10 -57.83 -1.05 -18.79 16 15 C -0.56 -9.13 5.74 37.16 0.21 -8.92 16 16 C 0.03 0.66 4.98 -27.88 -0.14 0.52 16 17 C -0.52 -13.70 9.11 -34.44 -0.31 -14.02 16 18 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 19 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 20 N -0.89 -25.72 13.29 55.43 0.74 -24.98 16 21 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 25 N -0.45 -6.87 11.55 -9.87 -0.11 -6.98 16 26 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.32 7.87 -51.93 -0.41 -0.09 16 30 H 0.05 0.35 8.09 -51.93 -0.42 -0.07 16 31 H 0.07 0.53 7.87 -51.93 -0.41 0.13 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.17 1.07 8.14 -51.92 -0.42 0.65 16 35 H 0.17 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.13 1.70 8.14 -51.92 -0.42 1.28 16 37 H 0.13 1.72 8.14 -51.92 -0.42 1.30 16 38 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 363.38 15.07 5.48 5.48 Total: -1.00 -36.77 363.38 -7.56 -44.33 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -5.83 Total: -3.24 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: -0.43 Total: -21.82 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 1.00 Total: -37.07 kcal Atomic # 8 Polarization: -38.35 SS G_CDS: -2.24 Total: -40.59 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: 37.92 SS G_CDS: -0.51 Total: 37.41 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.77 -7.56 -44.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327953026.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.911 kcal (2) G-P(sol) polarization free energy of solvation -36.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds