Wall clock time and date at job start Tue Mar 31 2020 11:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.42902 * 114.00186 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.46855 * 330.00024 * 4 3 2 6 6 C 1.52996 * 109.46960 * 89.99675 * 4 3 2 7 7 C 1.50698 * 109.47139 * 209.99847 * 4 3 2 8 8 N 1.29951 * 126.28558 * 315.02192 * 7 4 3 9 9 O 1.21298 * 110.24927 * 179.97438 * 8 7 4 10 10 C 1.33643 * 109.81268 * 359.97438 * 9 8 7 11 11 C 1.50700 * 126.55601 * 179.97438 * 10 9 8 12 12 S 1.81402 * 109.47241 * 269.97796 * 11 10 9 13 13 O 1.42094 * 108.57737 * 294.48453 * 12 11 10 14 14 O 1.42102 * 108.57486 * 65.50906 * 12 11 10 15 15 C 1.81392 * 101.92202 * 179.97438 * 12 11 10 16 16 C 1.53004 * 109.47056 * 180.02562 * 15 12 11 17 17 C 1.50706 * 109.46983 * 180.02562 * 16 15 12 18 18 H 1.07996 * 120.00255 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99773 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00097 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00037 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46990 * 89.99847 * 21 19 17 23 23 H 1.48501 * 109.47275 * 210.00179 * 21 19 17 24 24 H 1.48506 * 109.47066 * 330.00087 * 21 19 17 25 25 N 1.31135 * 106.89471 * 359.77000 * 10 9 8 26 26 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 28 28 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 29 29 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 30 30 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 31 31 H 1.09005 * 109.47615 * 300.00241 * 6 4 3 32 32 H 1.09006 * 109.47596 * 60.00249 * 6 4 3 33 33 H 1.09000 * 109.47046 * 180.02562 * 6 4 3 34 34 H 1.09005 * 109.46955 * 29.97303 * 11 10 9 35 35 H 1.08998 * 109.47256 * 149.97467 * 11 10 9 36 36 H 1.09004 * 109.47559 * 299.99593 * 15 12 11 37 37 H 1.08999 * 109.47108 * 60.00037 * 15 12 11 38 38 H 1.08996 * 109.46979 * 299.99709 * 16 15 12 39 39 H 1.08999 * 109.47207 * 60.00005 * 16 15 12 40 40 H 0.96999 * 120.00064 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8635 0.6015 0.5129 6 6 3.9387 1.5005 -1.4433 7 6 3.8348 2.7262 0.7098 8 7 3.2982 3.8996 0.5550 9 8 3.8479 4.7104 1.2704 10 6 4.8164 4.1130 1.9712 11 6 5.7344 4.7669 2.9716 12 16 7.2192 5.3730 2.1240 13 8 7.9427 4.2568 1.6243 14 8 6.8386 6.4098 1.2299 15 6 8.1585 6.1060 3.4918 16 6 9.4715 6.6822 2.9576 17 6 10.2521 7.2907 4.0941 18 1 9.8518 7.2690 5.0969 19 6 11.4776 7.8750 3.8536 20 7 11.9654 7.9010 2.6325 21 14 12.4450 8.6298 5.2620 22 1 13.3319 7.6004 5.8610 23 1 13.2678 9.7552 4.7503 24 1 11.5041 9.1341 6.2945 25 7 4.8125 2.8481 1.6251 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.6465 0.5846 -1.9572 32 1 3.5060 2.3591 -1.9569 33 1 5.0253 1.5861 -1.4437 34 1 5.2194 5.6030 3.4449 35 1 6.0210 4.0396 3.7313 36 1 7.5722 6.9028 3.9495 37 1 8.3739 5.3397 4.2364 38 1 10.0581 5.8859 2.4998 39 1 9.2557 7.4486 2.2132 40 1 12.8273 8.3125 2.4633 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327953026.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:52 Heat of formation + Delta-G solvation = -82.659489 kcal Electronic energy + Delta-G solvation = -24145.925945 eV Core-core repulsion = 20283.773692 eV Total energy + Delta-G solvation = -3862.152253 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.113 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -46.98863 -39.71847 -38.09972 -37.27926 -37.11926 -35.83297 -35.22890 -33.10585 -33.02572 -31.12437 -30.53559 -27.56326 -26.39242 -24.83252 -23.81843 -23.50187 -22.26814 -20.08249 -19.56770 -19.04738 -18.71969 -18.05174 -17.36980 -17.24878 -17.01001 -16.81713 -16.59636 -16.45049 -15.79235 -15.15723 -14.68994 -14.57403 -14.41234 -14.29929 -13.74064 -13.69020 -13.56611 -13.21710 -13.16755 -13.11077 -13.02470 -12.90929 -12.87989 -12.71367 -12.61011 -12.52104 -12.24282 -12.15864 -12.05670 -12.03367 -11.68298 -11.26118 -10.89379 -10.77800 -10.59438 -8.20916 -6.34485 -1.32388 -0.12114 0.81006 1.26166 1.45946 1.47240 1.58114 1.75848 1.88890 2.41931 2.60772 2.68233 2.85844 3.03861 3.13608 3.46852 3.74725 3.82523 3.95007 4.08109 4.13007 4.14862 4.24591 4.26214 4.42083 4.43711 4.45514 4.54829 4.68641 4.85203 4.87220 4.96103 5.05419 5.22648 5.36775 5.37801 5.74854 5.99813 6.10289 6.78426 6.81292 7.35830 8.91243 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.043499 B = 0.002334 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.536765 B =11994.334080 C =12118.446510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.046 3.954 3 O -0.397 6.397 4 C 0.179 3.821 5 H 0.116 0.884 6 C -0.168 4.168 7 C 0.160 3.840 8 N -0.372 5.372 9 O 0.089 5.911 10 C 0.179 3.821 11 C -0.512 4.512 12 S 2.399 3.601 13 O -0.969 6.969 14 O -0.972 6.972 15 C -0.555 4.555 16 C 0.015 3.985 17 C -0.534 4.534 18 H 0.085 0.915 19 C -0.008 4.008 20 N -0.937 5.937 21 Si 0.973 3.027 22 H -0.273 1.273 23 H -0.289 1.289 24 H -0.253 1.253 25 N -0.468 5.468 26 H 0.097 0.903 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.221 0.779 35 H 0.217 0.783 36 H 0.164 0.836 37 H 0.163 0.837 38 H 0.005 0.995 39 H 0.006 0.994 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.865 -15.114 1.048 25.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.316 6.316 4 C 0.120 3.880 5 H 0.133 0.867 6 C -0.226 4.226 7 C -0.114 4.114 8 N -0.078 5.078 9 O 0.027 5.973 10 C -0.041 4.041 11 C -0.640 4.640 12 S 2.585 3.415 13 O -0.966 6.966 14 O -0.969 6.969 15 C -0.688 4.688 16 C -0.023 4.023 17 C -0.573 4.573 18 H 0.103 0.897 19 C -0.206 4.206 20 N -0.577 5.577 21 Si 0.797 3.203 22 H -0.198 1.198 23 H -0.215 1.215 24 H -0.177 1.177 25 N -0.204 5.204 26 H 0.116 0.884 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.122 0.878 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.238 0.762 35 H 0.234 0.766 36 H 0.182 0.818 37 H 0.181 0.819 38 H 0.023 0.977 39 H 0.024 0.976 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -21.263 -15.290 -0.548 26.195 hybrid contribution 0.844 0.602 0.949 1.405 sum -20.419 -14.688 0.401 25.156 Atomic orbital electron populations 1.21770 0.92681 1.03689 1.02516 1.22895 0.96472 0.81619 1.01933 1.87972 1.18798 1.29611 1.95197 1.20204 0.83001 0.89301 0.95517 0.86673 1.22283 1.01965 1.04652 0.93741 1.26233 0.92214 0.96485 0.96420 1.74659 1.18669 1.01529 1.12922 1.85362 1.36578 1.35567 1.39763 1.27743 0.92623 0.87683 0.96094 1.29332 1.13068 1.14944 1.06614 1.08695 0.77652 0.75336 0.79814 1.93538 1.70620 1.53715 1.78690 1.93541 1.83207 1.57803 1.62367 1.30011 1.09186 1.13779 1.15838 1.18882 0.90688 0.95627 0.97145 1.21586 1.03392 1.37115 0.95201 0.89659 1.26142 0.99182 0.96754 0.98534 1.70121 1.19697 1.45623 1.22212 0.85317 0.78470 0.77774 0.78701 1.19811 1.21464 1.17707 1.71897 1.19606 1.15747 1.13152 0.88437 0.92889 0.92261 0.90923 0.91914 0.87798 0.92478 0.90975 0.76177 0.76570 0.81776 0.81943 0.97657 0.97583 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 10.28 71.98 0.74 -0.93 16 2 C 0.05 0.61 6.47 71.98 0.47 1.07 16 3 O -0.40 -8.51 9.97 -148.98 -1.49 -9.99 16 4 C 0.18 3.83 3.27 29.85 0.10 3.93 16 5 H 0.12 1.95 7.79 -2.39 -0.02 1.93 16 6 C -0.17 -3.12 9.51 71.98 0.68 -2.44 16 7 C 0.16 4.55 7.10 138.46 0.98 5.53 16 8 N -0.37 -11.57 12.16 -60.32 -0.73 -12.30 16 9 O 0.09 2.59 11.31 74.84 0.85 3.44 16 10 C 0.18 4.71 7.77 88.38 0.69 5.40 16 11 C -0.51 -8.74 6.43 71.24 0.46 -8.28 16 12 S 2.40 73.77 4.70 -56.49 -0.27 73.51 16 13 O -0.97 -38.11 18.10 -127.37 -2.30 -40.41 16 14 O -0.97 -37.89 18.10 -127.37 -2.30 -40.20 16 15 C -0.55 -16.95 5.74 71.98 0.41 -16.53 16 16 C 0.02 0.74 4.98 29.85 0.15 0.89 16 17 C -0.53 -27.76 9.11 25.60 0.23 -27.53 16 18 H 0.09 3.94 7.74 -2.91 -0.02 3.91 16 19 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 20 N -0.94 -56.17 13.29 21.45 0.28 -55.88 16 21 Si 0.97 41.84 29.54 68.60 2.03 43.86 16 22 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 23 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 24 H -0.25 -10.01 7.11 99.48 0.71 -9.31 16 25 N -0.47 -13.46 11.55 -303.19 -3.50 -16.97 16 26 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.07 0.68 7.87 -2.39 -0.02 0.66 16 30 H 0.06 0.69 8.09 -2.39 -0.02 0.67 16 31 H 0.10 1.28 7.87 -2.38 -0.02 1.26 16 32 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.22 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.22 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.16 3.76 8.14 -2.39 -0.02 3.74 16 37 H 0.16 3.78 8.14 -2.39 -0.02 3.76 16 38 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 39 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -85.92 363.38 -1.03 -86.95 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: 1.04 Total: 6.86 kcal Atomic # 6 Polarization: -44.24 SS G_CDS: 5.37 Total: -38.86 kcal Atomic # 7 Polarization: -81.20 SS G_CDS: -3.95 Total: -85.15 kcal Atomic # 8 Polarization: -81.91 SS G_CDS: -5.25 Total: -87.16 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.86 kcal Atomic # 16 Polarization: 73.77 SS G_CDS: -0.27 Total: 73.51 kcal Total: -85.92 -1.03 -86.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327953026.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.288 kcal (2) G-P(sol) polarization free energy of solvation -85.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds