Wall clock time and date at job start Tue Mar 31 2020 11:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 C 1.76201 * 103.00220 * 2 1 4 4 C 1.39007 * 120.06375 * 0.02562 * 3 2 1 5 5 C 1.38074 * 119.97142 * 179.97438 * 4 3 2 6 6 C 1.38290 * 120.09971 * 0.02562 * 5 4 3 7 7 C 1.38505 * 120.13793 * 359.95700 * 6 5 4 8 8 F 1.35104 * 119.98747 * 180.02562 * 7 6 5 9 9 C 1.38325 * 120.03079 * 0.27385 * 7 6 5 10 10 C 1.50695 * 120.05453 * 179.72927 * 9 7 6 11 11 N 1.46499 * 109.47375 * 90.00096 * 10 9 7 12 12 C 1.38823 * 119.99936 * 179.97438 * 11 10 9 13 13 C 1.39799 * 119.58568 * 359.72631 * 12 11 10 14 14 C 1.38598 * 119.48983 * 179.76624 * 13 12 11 15 15 C 1.38385 * 118.68117 * 0.50073 * 14 13 12 16 16 C 1.40555 * 119.15097 * 359.74330 * 15 14 13 17 17 C 1.41311 * 119.78879 * 180.02562 * 16 15 14 18 18 H 1.08006 * 119.99594 * 359.97438 * 17 16 15 19 19 C 1.40026 * 120.00474 * 179.97438 * 17 16 15 20 20 N 1.30745 * 119.99446 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00204 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46965 * 60.00056 * 21 19 17 23 23 H 1.48500 * 109.47315 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.47138 * 300.00363 * 21 19 17 25 25 N 1.31959 * 119.58388 * 179.97438 * 12 11 10 26 26 H 1.08999 * 109.47581 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47259 * 299.99606 * 1 2 3 28 28 H 1.09003 * 109.47330 * 59.99452 * 1 2 3 29 29 H 1.07996 * 120.01866 * 359.97438 * 4 3 2 30 30 H 1.08000 * 119.95076 * 179.97438 * 5 4 3 31 31 H 1.08006 * 119.93114 * 179.97438 * 6 5 4 32 32 H 1.09010 * 109.47163 * 210.00157 * 10 9 7 33 33 H 1.08997 * 109.47420 * 329.99462 * 10 9 7 34 34 H 0.96994 * 119.99979 * 0.02562 * 11 10 9 35 35 H 1.08000 * 120.25171 * 359.97438 * 13 12 11 36 36 H 1.08001 * 120.65566 * 180.24783 * 14 13 12 37 37 H 1.08000 * 120.42804 * 179.77011 * 15 14 13 38 38 H 0.97007 * 119.99390 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1948 2.6660 0.0005 5 6 1.5076 4.0109 0.0011 6 6 2.8301 4.4153 0.0005 7 6 3.8454 3.4732 0.0004 8 9 5.1363 3.8718 0.0004 9 6 3.5383 2.1245 -0.0050 10 6 4.6426 1.0991 -0.0114 11 7 5.0028 0.7607 1.3678 12 6 6.0030 -0.1695 1.6156 13 6 6.6569 -0.7824 0.5426 14 6 7.6585 -1.7072 0.7923 15 6 7.9751 -2.0049 2.1062 16 6 7.2780 -1.3589 3.1417 17 6 7.5907 -1.6524 4.4882 18 1 8.3630 -2.3713 4.7188 19 6 6.8994 -1.0111 5.5233 20 7 5.9641 -0.1412 5.2440 21 14 7.3123 -1.3995 7.3032 22 1 8.7364 -1.0692 7.5643 23 1 6.4445 -0.5944 8.1998 24 1 7.0841 -2.8442 7.5604 25 7 6.3212 -0.4678 2.8610 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 0.1616 2.3518 0.0005 30 1 0.7184 4.7481 0.0011 31 1 3.0717 5.4680 0.0005 32 1 4.3023 0.2019 -0.5286 33 1 5.5135 1.5062 -0.5250 34 1 4.5420 1.1861 2.1077 35 1 6.3859 -0.5345 -0.4730 36 1 8.1787 -2.1890 -0.0223 37 1 8.7483 -2.7240 2.3330 38 1 5.4855 0.3033 5.9612 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328641407.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:59 Heat of formation + Delta-G solvation = 5.418047 kcal Electronic energy + Delta-G solvation = -23312.093388 eV Core-core repulsion = 19773.442172 eV Total energy + Delta-G solvation = -3538.651215 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.090 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.01874 -40.40472 -39.84251 -36.85713 -35.20268 -33.02699 -32.17513 -32.03573 -30.36666 -29.60027 -27.30925 -26.80321 -24.12246 -23.47526 -22.82661 -22.04200 -19.34105 -19.14344 -18.24822 -17.87817 -17.07877 -16.83811 -16.76303 -16.46930 -16.37468 -15.91940 -15.26950 -15.11167 -15.02033 -14.74558 -14.59380 -14.43415 -14.15214 -13.69944 -13.66741 -13.45864 -13.34621 -12.85507 -12.73717 -12.67444 -12.58348 -12.37890 -12.23205 -11.76431 -11.31793 -11.05663 -10.80897 -10.67051 -9.87828 -9.84076 -9.44270 -8.51907 -8.30907 -8.21611 -6.47632 -0.05425 0.01128 0.46230 1.07238 1.34589 1.41163 1.46907 1.53619 1.59823 2.25701 2.30176 2.83086 2.93472 3.22307 3.47116 3.74772 3.88134 4.06845 4.21166 4.27880 4.29395 4.35117 4.41221 4.47417 4.54279 4.76025 4.83709 4.88640 4.97974 5.00224 5.06632 5.09339 5.10540 5.22854 5.35990 5.70847 5.75469 5.95663 6.04947 6.21914 6.52023 6.81483 6.90821 7.20077 8.34368 8.52281 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.013385 B = 0.003727 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.345476 B = 7510.938542 C = 7613.929457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.143 6.143 3 C -0.048 4.048 4 C -0.146 4.146 5 C -0.052 4.052 6 C -0.162 4.162 7 C 0.112 3.888 8 F -0.147 7.147 9 C -0.144 4.144 10 C 0.189 3.811 11 N -0.721 5.721 12 C 0.399 3.601 13 C -0.370 4.370 14 C -0.028 4.028 15 C -0.342 4.342 16 C 0.259 3.741 17 C -0.472 4.472 18 H 0.088 0.912 19 C 0.026 3.974 20 N -0.752 5.752 21 Si 0.987 3.013 22 H -0.260 1.260 23 H -0.269 1.269 24 H -0.258 1.258 25 N -0.563 5.563 26 H 0.120 0.880 27 H 0.096 0.904 28 H 0.105 0.895 29 H 0.161 0.839 30 H 0.180 0.820 31 H 0.161 0.839 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.390 0.610 35 H 0.111 0.889 36 H 0.130 0.870 37 H 0.104 0.896 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.455 8.320 -9.896 20.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.102 5.898 3 C -0.162 4.162 4 C -0.169 4.169 5 C -0.071 4.071 6 C -0.183 4.183 7 C 0.090 3.910 8 F -0.125 7.125 9 C -0.151 4.151 10 C 0.065 3.935 11 N -0.355 5.355 12 C 0.159 3.841 13 C -0.395 4.395 14 C -0.052 4.052 15 C -0.365 4.365 16 C 0.132 3.868 17 C -0.504 4.504 18 H 0.106 0.894 19 C -0.196 4.196 20 N -0.374 5.374 21 Si 0.807 3.193 22 H -0.184 1.184 23 H -0.193 1.193 24 H -0.183 1.183 25 N -0.286 5.286 26 H 0.138 0.862 27 H 0.115 0.885 28 H 0.124 0.876 29 H 0.179 0.821 30 H 0.197 0.803 31 H 0.179 0.821 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.223 0.777 35 H 0.129 0.871 36 H 0.147 0.853 37 H 0.123 0.877 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.352 7.753 -9.366 19.584 hybrid contribution 0.351 0.596 0.210 0.723 sum -15.001 8.350 -9.157 19.457 Atomic orbital electron populations 1.23882 0.91485 1.08546 1.07056 1.86494 1.09970 1.02238 1.91125 1.21642 0.94800 0.98013 1.01724 1.21613 0.99121 0.92974 1.03240 1.21399 0.95858 0.95861 0.94016 1.21494 0.92283 1.00276 1.04295 1.17803 0.78866 0.92358 1.01941 1.91493 1.36087 1.91184 1.93777 1.19457 0.94021 0.92991 1.08622 1.19765 0.94281 0.95561 0.83915 1.44109 1.39673 1.45684 1.06058 1.18885 0.87218 0.87496 0.90531 1.20905 1.09413 1.12000 0.97224 1.20980 0.94225 0.94158 0.95880 1.21691 1.09641 1.11297 0.93836 1.18690 0.86954 0.86991 0.94131 1.19921 1.18293 1.21947 0.90198 0.89415 1.26982 0.93526 0.93398 1.05693 1.70271 1.15051 1.17041 1.35069 0.85212 0.79325 0.79468 0.75316 1.18380 1.19314 1.18266 1.68182 1.21295 1.21965 1.17110 0.86158 0.88544 0.87588 0.82125 0.80316 0.82107 0.91465 0.92646 0.77684 0.87096 0.85258 0.87749 0.91424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.15 113.37 1.04 -0.93 16 2 S -0.14 -3.70 20.78 -56.49 -1.17 -4.88 16 3 C -0.05 -1.22 6.11 22.62 0.14 -1.08 16 4 C -0.15 -2.54 9.36 22.42 0.21 -2.33 16 5 C -0.05 -0.76 10.04 22.24 0.22 -0.53 16 6 C -0.16 -3.19 10.02 22.35 0.22 -2.96 16 7 C 0.11 3.16 7.24 22.35 0.16 3.32 16 8 F -0.15 -4.83 16.48 44.97 0.74 -4.09 16 9 C -0.14 -4.37 5.27 -19.68 -0.10 -4.48 16 10 C 0.19 6.94 4.38 85.63 0.38 7.32 16 11 N -0.72 -32.39 5.71 -348.71 -1.99 -34.39 16 12 C 0.40 21.14 7.65 133.42 1.02 22.16 16 13 C -0.37 -18.12 9.34 22.73 0.21 -17.90 16 14 C -0.03 -1.36 10.15 22.39 0.23 -1.14 16 15 C -0.34 -18.32 9.83 22.87 0.22 -18.09 16 16 C 0.26 15.50 6.55 40.18 0.26 15.76 16 17 C -0.47 -27.17 9.14 23.46 0.21 -26.95 16 18 H 0.09 4.72 7.85 -2.91 -0.02 4.69 16 19 C 0.03 1.38 5.50 85.29 0.47 1.85 16 20 N -0.75 -42.47 11.46 21.84 0.25 -42.22 16 21 Si 0.99 39.90 29.56 68.60 2.03 41.93 16 22 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 23 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 24 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 25 N -0.56 -33.59 7.89 -186.58 -1.47 -35.06 16 26 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.10 1.14 7.75 -2.39 -0.02 1.12 16 28 H 0.11 1.00 7.75 -2.39 -0.02 0.98 16 29 H 0.16 1.77 5.88 -2.91 -0.02 1.75 16 30 H 0.18 1.08 8.06 -2.91 -0.02 1.06 16 31 H 0.16 2.34 8.06 -2.91 -0.02 2.31 16 32 H 0.07 2.47 6.56 -2.38 -0.02 2.45 16 33 H 0.06 2.09 7.43 -2.39 -0.02 2.07 16 34 H 0.39 18.18 8.58 -92.71 -0.80 17.38 16 35 H 0.11 4.83 6.68 -2.91 -0.02 4.81 16 36 H 0.13 5.14 8.06 -2.91 -0.02 5.12 16 37 H 0.10 5.19 8.06 -2.91 -0.02 5.16 16 38 H 0.28 14.09 8.29 -92.70 -0.77 13.32 16 Total: -1.00 -73.01 340.06 3.59 -69.42 By element: Atomic # 1 Polarization: 34.96 SS G_CDS: 0.31 Total: 35.28 kcal Atomic # 6 Polarization: -30.89 SS G_CDS: 4.90 Total: -26.00 kcal Atomic # 7 Polarization: -108.45 SS G_CDS: -3.21 Total: -111.67 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 0.74 Total: -4.09 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 2.03 Total: 41.93 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -1.17 Total: -4.88 kcal Total: -73.01 3.59 -69.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328641407.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.841 kcal (2) G-P(sol) polarization free energy of solvation -73.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds