Wall clock time and date at job start Tue Mar 31 2020 12:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 120.00034 * 2 1 4 4 H 1.48497 * 109.47323 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46790 * 299.99677 * 3 2 1 6 6 H 1.48501 * 109.47364 * 59.99705 * 3 2 1 7 7 C 1.37875 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00183 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00025 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46956 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.46624 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00521 * 359.73045 * 11 10 9 13 13 N 1.34784 * 119.99774 * 180.02562 * 11 10 9 14 14 C 1.47074 * 120.94630 * 179.44622 * 13 11 10 15 15 C 1.53815 * 108.98113 * 116.46486 * 14 13 11 16 16 N 1.46216 * 109.15807 * 45.81697 * 15 14 13 17 17 C 1.35730 * 125.23856 * 341.38899 * 16 15 14 18 18 N 1.29731 * 107.55372 * 180.66259 * 17 16 15 19 19 N 1.28929 * 109.42378 * 359.69021 * 18 17 16 20 20 C 1.30818 * 109.74686 * 0.10722 * 19 18 17 21 21 C 1.50703 * 126.44179 * 180.16503 * 20 19 18 22 22 F 1.39905 * 109.47109 * 14.97280 * 21 20 19 23 23 F 1.39899 * 109.46882 * 134.97249 * 21 20 19 24 24 F 1.39892 * 109.46911 * 254.97454 * 21 20 19 25 25 C 1.47528 * 120.94620 * 359.72875 * 13 11 10 26 26 H 0.97000 * 119.99849 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46645 * 60.00513 * 9 7 2 28 28 H 1.08993 * 109.47357 * 300.00275 * 9 7 2 29 29 H 1.09001 * 109.46782 * 60.00894 * 10 9 7 30 30 H 1.08993 * 109.47555 * 300.00451 * 10 9 7 31 31 H 1.09005 * 109.50745 * 236.38988 * 14 13 11 32 32 H 1.08994 * 109.51255 * 356.53290 * 14 13 11 33 33 H 1.09010 * 109.62928 * 285.85518 * 15 14 13 34 34 H 1.09004 * 109.48462 * 165.69880 * 15 14 13 35 35 H 1.08997 * 109.95401 * 342.49327 * 25 13 11 36 36 H 1.08991 * 109.95333 * 103.68449 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4918 -4.9671 0.0033 12 8 0.2790 -4.9672 0.0095 13 7 2.1658 -6.1344 0.0039 14 6 1.4516 -7.4200 0.0178 15 6 1.7635 -8.1797 -1.2828 16 7 3.2013 -8.1184 -1.5413 17 6 4.0588 -7.2230 -0.9890 18 7 5.2407 -7.4688 -1.4640 19 7 5.1772 -8.4684 -2.2758 20 6 3.9442 -8.8988 -2.3512 21 6 3.4477 -10.0510 -3.1861 22 9 4.5357 -10.8189 -3.6151 23 9 2.5889 -10.8462 -2.4197 24 9 2.7578 -9.5575 -4.2985 25 6 3.6408 -6.1587 -0.0032 26 1 -0.4850 0.8401 -0.0004 27 1 0.6242 -2.5575 -0.8881 28 1 0.6247 -2.5563 0.8919 29 1 2.8726 -3.6039 0.8910 30 1 2.8714 -3.6047 -0.8889 31 1 1.7798 -8.0094 0.8740 32 1 0.3790 -7.2399 0.0887 33 1 1.2244 -7.7220 -2.1124 34 1 1.4561 -9.2203 -1.1787 35 1 4.0274 -5.1890 -0.3165 36 1 4.0135 -6.4039 0.9913 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330069020.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:09 Heat of formation + Delta-G solvation = -95.873705 kcal Electronic energy + Delta-G solvation = -26726.354528 eV Core-core repulsion = 22218.621322 eV Total energy + Delta-G solvation = -4507.733205 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.79447 -48.35353 -48.24384 -44.00446 -39.93700 -37.10526 -34.96211 -33.64975 -32.24220 -31.59624 -30.50644 -27.80710 -26.38364 -26.10166 -24.40135 -22.61099 -21.96177 -20.96235 -19.32872 -19.23627 -18.82805 -18.61312 -17.37045 -17.29107 -17.07129 -16.01880 -15.87291 -15.65488 -15.17589 -15.04811 -14.73877 -14.60347 -14.48301 -14.40229 -14.38261 -14.15418 -13.83215 -13.50181 -13.18372 -12.78630 -12.53079 -12.35843 -12.24596 -12.02616 -11.30140 -11.14690 -11.01740 -10.82402 -10.64802 -10.14031 -10.04079 -9.81525 -9.46797 -9.18241 -9.13153 -8.41496 -6.05146 -4.10083 0.83783 1.28407 1.99481 2.08811 2.56983 2.76817 2.85591 3.28015 3.33685 3.35884 3.38821 3.58983 3.67767 3.80659 4.26424 4.32782 4.41210 4.56143 4.79563 4.86626 4.96727 5.14463 5.16864 5.27764 5.30622 5.33012 5.89337 5.95490 5.98465 6.10793 6.63549 7.17427 7.62936 7.69947 7.91390 7.94527 8.18985 8.35059 8.97650 9.54602 11.05714 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.024445 B = 0.002845 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.133894 B = 9839.976366 C =10223.129058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.037 3.963 10 C -0.132 4.132 11 C 0.522 3.478 12 O -0.517 6.517 13 N -0.638 5.638 14 C 0.099 3.901 15 C 0.074 3.926 16 N -0.438 5.438 17 C 0.203 3.797 18 N -0.268 5.268 19 N -0.224 5.224 20 C 0.073 3.927 21 C 0.573 3.427 22 F -0.146 7.146 23 F -0.166 7.166 24 F -0.160 7.160 25 C 0.197 3.803 26 H 0.261 0.739 27 H 0.023 0.977 28 H 0.025 0.975 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.126 0.874 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.134 0.866 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.689 -22.274 -2.163 23.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.567 4.567 8 H 0.076 0.924 9 C 0.000 4.000 10 C -0.172 4.172 11 C 0.313 3.687 12 O -0.390 6.390 13 N -0.376 5.376 14 C -0.024 4.024 15 C -0.049 4.049 16 N -0.129 5.129 17 C -0.065 4.065 18 N -0.110 5.110 19 N -0.067 5.067 20 C -0.194 4.194 21 C 0.516 3.484 22 F -0.127 7.127 23 F -0.148 7.148 24 F -0.141 7.141 25 C 0.072 3.928 26 H 0.071 0.929 27 H 0.042 0.958 28 H 0.043 0.957 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.144 0.856 33 H 0.124 0.876 34 H 0.132 0.868 35 H 0.152 0.848 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.230 -22.045 -2.427 23.037 hybrid contribution -0.941 0.468 -0.056 1.052 sum 5.289 -21.577 -2.482 22.354 Atomic orbital electron populations 1.69997 1.06092 1.26638 1.50034 1.25020 0.94833 0.99334 0.95125 0.86525 0.80070 0.83687 0.77642 1.19632 1.20990 1.20967 1.21218 0.93027 0.90818 1.51661 0.92388 1.18928 0.93076 0.89322 0.98718 1.22000 1.01042 0.91243 1.02882 1.21793 0.88511 0.84916 0.73459 1.90699 1.14120 1.86585 1.47551 1.48604 1.05568 1.06287 1.77156 1.21928 1.01662 0.84455 0.94394 1.22972 0.75467 1.04505 1.02003 1.45791 1.11029 1.23793 1.32242 1.25353 0.86540 0.95045 0.99564 1.74251 1.17930 1.09923 1.08879 1.74597 1.13432 1.05925 1.12790 1.24036 0.91405 1.00817 1.03140 1.16332 0.75484 0.79440 0.77185 1.93297 1.53864 1.75663 1.89837 1.93243 1.70914 1.75220 1.75381 1.93303 1.79726 1.87496 1.53618 1.20416 0.80402 0.96255 0.95767 0.92916 0.95818 0.95653 0.89473 0.89785 0.89678 0.85572 0.87615 0.86810 0.84824 0.86993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.01 29.54 -169.99 -5.02 15.98 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.53 -14.24 9.11 -34.44 -0.31 -14.55 16 8 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 9 C 0.04 0.92 4.26 -27.88 -0.12 0.81 16 10 C -0.13 -2.35 4.07 -27.88 -0.11 -2.47 16 11 C 0.52 8.51 7.71 -10.98 -0.08 8.42 16 12 O -0.52 -10.43 15.42 5.56 0.09 -10.35 16 13 N -0.64 -7.34 2.96 -173.10 -0.51 -7.85 16 14 C 0.10 0.86 6.46 -3.30 -0.02 0.84 16 15 C 0.07 0.58 6.87 -3.77 -0.03 0.55 16 16 N -0.44 -4.58 3.11 -110.54 -0.34 -4.92 16 17 C 0.20 2.30 7.88 -155.30 -1.22 1.07 16 18 N -0.27 -3.64 12.21 32.79 0.40 -3.24 16 19 N -0.22 -3.09 12.08 32.71 0.40 -2.69 16 20 C 0.07 0.84 7.34 -155.38 -1.14 -0.30 16 21 C 0.57 5.47 3.38 36.01 0.12 5.59 16 22 F -0.15 -1.47 17.19 2.25 0.04 -1.43 16 23 F -0.17 -1.35 15.86 2.25 0.04 -1.31 16 24 F -0.16 -1.56 17.30 2.25 0.04 -1.52 16 25 C 0.20 1.87 6.65 -4.50 -0.03 1.84 16 26 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 27 H 0.02 0.65 8.10 -51.93 -0.42 0.23 16 28 H 0.03 0.69 8.10 -51.93 -0.42 0.27 16 29 H 0.09 1.37 8.13 -51.93 -0.42 0.94 16 30 H 0.08 1.38 7.54 -51.93 -0.39 0.99 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.13 1.19 7.01 -51.93 -0.36 0.83 16 33 H 0.11 0.86 8.14 -51.92 -0.42 0.44 16 34 H 0.11 0.62 6.89 -51.93 -0.36 0.26 16 35 H 0.13 1.24 6.26 -51.93 -0.33 0.91 16 36 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 321.96 15.07 4.85 4.85 Total: -1.00 -33.85 321.96 -5.85 -39.70 By element: Atomic # 1 Polarization: -1.36 SS G_CDS: -3.51 Total: -4.87 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: -3.05 Total: 3.36 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: 0.67 Total: -44.42 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.11 Total: -4.26 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.85 -5.85 -39.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330069020.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.175 kcal (2) G-P(sol) polarization free energy of solvation -33.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds