Wall clock time and date at job start Tue Mar 31 2020 12:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 120.00034 * 2 1 4 4 H 1.48497 * 109.47323 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46790 * 299.99677 * 3 2 1 6 6 H 1.48501 * 109.47364 * 59.99705 * 3 2 1 7 7 C 1.37875 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00183 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00025 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46956 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.46624 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00521 * 359.73045 * 11 10 9 13 13 N 1.34784 * 119.99774 * 180.02562 * 11 10 9 14 14 C 1.47074 * 120.94630 * 179.44622 * 13 11 10 15 15 C 1.53815 * 108.98113 * 116.46486 * 14 13 11 16 16 N 1.46216 * 109.15807 * 45.81697 * 15 14 13 17 17 C 1.35730 * 125.23856 * 341.38899 * 16 15 14 18 18 N 1.29731 * 107.55372 * 180.66259 * 17 16 15 19 19 N 1.28929 * 109.42378 * 359.69021 * 18 17 16 20 20 C 1.30818 * 109.74686 * 0.10722 * 19 18 17 21 21 C 1.50703 * 126.44179 * 180.16503 * 20 19 18 22 22 F 1.39905 * 109.47109 * 14.97280 * 21 20 19 23 23 F 1.39899 * 109.46882 * 134.97249 * 21 20 19 24 24 F 1.39892 * 109.46911 * 254.97454 * 21 20 19 25 25 C 1.47528 * 120.94620 * 359.72875 * 13 11 10 26 26 H 0.97000 * 119.99849 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46645 * 60.00513 * 9 7 2 28 28 H 1.08993 * 109.47357 * 300.00275 * 9 7 2 29 29 H 1.09001 * 109.46782 * 60.00894 * 10 9 7 30 30 H 1.08993 * 109.47555 * 300.00451 * 10 9 7 31 31 H 1.09005 * 109.50745 * 236.38988 * 14 13 11 32 32 H 1.08994 * 109.51255 * 356.53290 * 14 13 11 33 33 H 1.09010 * 109.62928 * 285.85518 * 15 14 13 34 34 H 1.09004 * 109.48462 * 165.69880 * 15 14 13 35 35 H 1.08997 * 109.95401 * 342.49327 * 25 13 11 36 36 H 1.08991 * 109.95333 * 103.68449 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4918 -4.9671 0.0033 12 8 0.2790 -4.9672 0.0095 13 7 2.1658 -6.1344 0.0039 14 6 1.4516 -7.4200 0.0178 15 6 1.7635 -8.1797 -1.2828 16 7 3.2013 -8.1184 -1.5413 17 6 4.0588 -7.2230 -0.9890 18 7 5.2407 -7.4688 -1.4640 19 7 5.1772 -8.4684 -2.2758 20 6 3.9442 -8.8988 -2.3512 21 6 3.4477 -10.0510 -3.1861 22 9 4.5357 -10.8189 -3.6151 23 9 2.5889 -10.8462 -2.4197 24 9 2.7578 -9.5575 -4.2985 25 6 3.6408 -6.1587 -0.0032 26 1 -0.4850 0.8401 -0.0004 27 1 0.6242 -2.5575 -0.8881 28 1 0.6247 -2.5563 0.8919 29 1 2.8726 -3.6039 0.8910 30 1 2.8714 -3.6047 -0.8889 31 1 1.7798 -8.0094 0.8740 32 1 0.3790 -7.2399 0.0887 33 1 1.2244 -7.7220 -2.1124 34 1 1.4561 -9.2203 -1.1787 35 1 4.0274 -5.1890 -0.3165 36 1 4.0135 -6.4039 0.9913 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330069020.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:08 Heat of formation + Delta-G solvation = -117.430209 kcal Electronic energy + Delta-G solvation = -26727.289288 eV Core-core repulsion = 22218.621322 eV Total energy + Delta-G solvation = -4508.667965 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.54382 -49.07530 -49.01744 -44.88024 -41.11319 -38.14152 -35.91082 -35.57623 -33.20368 -33.11924 -31.61468 -28.78453 -27.74994 -27.18854 -25.53096 -23.63597 -23.27450 -22.10145 -20.25930 -20.00128 -19.67810 -19.55841 -18.77879 -18.16340 -18.12335 -17.52421 -16.98079 -16.72624 -16.40135 -15.90662 -15.80264 -15.47787 -15.46211 -15.33162 -15.13834 -15.09904 -14.92752 -14.43803 -14.22051 -14.09860 -13.96196 -13.57161 -13.29695 -13.14770 -12.88380 -12.84733 -12.43050 -12.05624 -11.93695 -11.64106 -11.60580 -11.27871 -10.96457 -10.82500 -10.56220 -10.11686 -8.17436 -6.30177 -0.00619 0.47545 1.17950 1.20652 1.44150 1.44631 1.48096 1.57682 1.66205 2.07082 2.43510 2.57511 2.79414 2.91867 3.07935 3.16794 3.38369 3.66915 3.77843 3.92455 4.14283 4.19983 4.31107 4.38889 4.46869 4.49772 4.53677 4.58603 5.01660 5.11034 5.23536 5.52420 5.63995 5.86190 6.01504 6.18600 6.88100 7.00669 7.05567 7.40336 8.95065 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.024445 B = 0.002845 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.133894 B = 9839.976366 C =10223.129058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.968 3.032 4 H -0.253 1.253 5 H -0.284 1.284 6 H -0.281 1.281 7 C -0.540 4.540 8 H 0.077 0.923 9 C 0.042 3.958 10 C -0.123 4.123 11 C 0.528 3.472 12 O -0.566 6.566 13 N -0.626 5.626 14 C 0.098 3.902 15 C 0.074 3.926 16 N -0.438 5.438 17 C 0.205 3.795 18 N -0.294 5.294 19 N -0.256 5.256 20 C 0.077 3.923 21 C 0.581 3.419 22 F -0.149 7.149 23 F -0.154 7.154 24 F -0.160 7.160 25 C 0.196 3.804 26 H 0.262 0.738 27 H -0.018 1.018 28 H -0.012 1.012 29 H 0.116 0.884 30 H 0.102 0.898 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.103 0.897 34 H 0.144 0.856 35 H 0.139 0.861 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.377 -23.188 -1.660 24.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.792 3.208 4 H -0.176 1.176 5 H -0.210 1.210 6 H -0.207 1.207 7 C -0.578 4.578 8 H 0.095 0.905 9 C 0.004 3.996 10 C -0.163 4.163 11 C 0.319 3.681 12 O -0.443 6.443 13 N -0.362 5.362 14 C -0.025 4.025 15 C -0.048 4.048 16 N -0.127 5.127 17 C -0.063 4.063 18 N -0.135 5.135 19 N -0.099 5.099 20 C -0.192 4.192 21 C 0.524 3.476 22 F -0.130 7.130 23 F -0.135 7.135 24 F -0.142 7.142 25 C 0.072 3.928 26 H 0.071 0.929 27 H 0.000 1.000 28 H 0.006 0.994 29 H 0.134 0.866 30 H 0.121 0.879 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.121 0.879 34 H 0.162 0.838 35 H 0.157 0.843 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 7.972 -23.009 -1.925 24.427 hybrid contribution -1.481 0.663 -0.223 1.638 sum 6.491 -22.347 -2.148 23.369 Atomic orbital electron populations 1.70162 1.08172 1.27646 1.51691 1.26058 0.95657 1.03720 0.94817 0.85358 0.79474 0.78543 0.77403 1.17594 1.21008 1.20723 1.21752 0.94077 0.91588 1.50356 0.90505 1.18699 0.93679 0.92240 0.94955 1.21747 0.99577 0.89779 1.05159 1.21305 0.87626 0.85840 0.73303 1.90691 1.16041 1.87395 1.50218 1.48364 1.06632 1.05981 1.75227 1.22167 1.01117 0.83148 0.96046 1.23145 0.74037 1.06202 1.01383 1.45950 1.11727 1.23291 1.31782 1.25571 0.86245 0.95122 0.99375 1.74176 1.19247 1.10465 1.09644 1.74524 1.14859 1.06747 1.13780 1.24271 0.91049 1.00976 1.02912 1.16136 0.75481 0.79037 0.76985 1.93293 1.54188 1.75650 1.89859 1.93266 1.70435 1.74763 1.75059 1.93306 1.79672 1.87552 1.53643 1.20750 0.78682 0.96180 0.97217 0.92941 0.99959 0.99369 0.86628 0.87943 0.86510 0.86350 0.87924 0.83805 0.84312 0.83383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.40 13.29 21.45 0.28 -57.12 16 2 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 3 Si 0.97 42.98 29.54 68.60 2.03 45.01 16 4 H -0.25 -10.33 7.11 99.48 0.71 -9.62 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 7 C -0.54 -29.05 9.11 25.60 0.23 -28.82 16 8 H 0.08 3.75 7.74 -2.91 -0.02 3.73 16 9 C 0.04 2.15 4.26 29.85 0.13 2.28 16 10 C -0.12 -4.27 4.07 29.85 0.12 -4.15 16 11 C 0.53 16.83 7.71 87.65 0.68 17.50 16 12 O -0.57 -23.40 15.42 -3.04 -0.05 -23.45 16 13 N -0.63 -12.95 2.96 -819.96 -2.43 -15.38 16 14 C 0.10 1.44 6.46 86.54 0.56 2.00 16 15 C 0.07 0.97 6.87 86.71 0.60 1.56 16 16 N -0.44 -8.10 3.11 -503.63 -1.57 -9.66 16 17 C 0.21 4.16 7.88 138.22 1.09 5.25 16 18 N -0.29 -7.52 12.21 -50.19 -0.61 -8.13 16 19 N -0.26 -6.76 12.08 -50.42 -0.61 -7.37 16 20 C 0.08 1.62 7.34 138.12 1.01 2.63 16 21 C 0.58 10.04 3.38 71.24 0.24 10.28 16 22 F -0.15 -2.80 17.19 44.97 0.77 -2.03 16 23 F -0.15 -2.10 15.86 44.97 0.71 -1.39 16 24 F -0.16 -2.86 17.30 44.97 0.78 -2.08 16 25 C 0.20 3.09 6.65 85.52 0.57 3.66 16 26 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 27 H -0.02 -1.06 8.10 -2.39 -0.02 -1.08 16 28 H -0.01 -0.70 8.10 -2.39 -0.02 -0.72 16 29 H 0.12 3.33 8.13 -2.39 -0.02 3.31 16 30 H 0.10 3.17 7.54 -2.39 -0.02 3.15 16 31 H 0.12 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.12 2.06 7.01 -2.39 -0.02 2.04 16 33 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.14 1.05 6.89 -2.39 -0.02 1.03 16 35 H 0.14 2.12 6.26 -2.39 -0.01 2.10 16 36 H 0.15 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -76.67 321.96 6.14 -70.53 By element: Atomic # 1 Polarization: -2.45 SS G_CDS: 1.15 Total: -1.30 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: 5.69 Total: 12.37 kcal Atomic # 7 Polarization: -92.73 SS G_CDS: -4.93 Total: -97.66 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.05 Total: -23.45 kcal Atomic # 9 Polarization: -7.76 SS G_CDS: 2.26 Total: -5.50 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -76.67 6.14 -70.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330069020.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.899 kcal (2) G-P(sol) polarization free energy of solvation -76.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds