Wall clock time and date at job start Tue Mar 31 2020 12:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.41386 * 126.58000 * 2 1 4 4 C 1.34517 * 106.83991 * 179.97438 * 3 2 1 5 5 O 1.34310 * 108.41854 * 359.73571 * 4 3 2 6 6 C 1.34307 * 109.47671 * 0.43736 * 5 4 3 7 7 C 1.50697 * 125.78862 * 179.82663 * 6 5 4 8 8 N 1.46502 * 109.46959 * 269.69304 * 7 6 5 9 9 C 1.34777 * 119.99692 * 180.02562 * 8 7 6 10 10 O 1.21365 * 120.00209 * 359.97438 * 9 8 7 11 11 C 1.49310 * 119.99828 * 179.97438 * 9 8 7 12 12 O 1.21401 * 120.00204 * 0.02562 * 11 9 8 13 13 N 1.34777 * 119.99824 * 179.97438 * 11 9 8 14 14 C 1.40291 * 119.99920 * 179.97438 * 13 11 9 15 15 C 1.40728 * 126.10038 * 359.96768 * 14 13 11 16 16 N 1.30869 * 108.37411 * 179.78868 * 15 14 13 17 17 N 1.40064 * 108.43837 * 0.38012 * 16 15 14 18 18 C 1.37301 * 126.05474 * 179.87893 * 17 16 15 19 19 H 1.08002 * 119.99622 * 179.68469 * 18 17 16 20 20 C 1.39003 * 119.99972 * 359.96620 * 18 17 16 21 21 N 1.31284 * 120.00043 * 359.72316 * 20 18 17 22 22 Si 1.86801 * 119.99884 * 179.72361 * 20 18 17 23 23 H 1.48504 * 109.46920 * 59.99981 * 22 20 18 24 24 H 1.48504 * 109.46970 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47038 * 299.99751 * 22 20 18 26 26 C 1.35786 * 126.10045 * 180.02562 * 14 13 11 27 27 H 1.08999 * 109.47378 * 270.04912 * 1 2 3 28 28 H 1.09010 * 109.47036 * 30.04355 * 1 2 3 29 29 H 1.09000 * 109.47174 * 150.04042 * 1 2 3 30 30 H 1.07994 * 126.57943 * 359.97438 * 3 2 1 31 31 H 1.07998 * 125.79109 * 180.02562 * 4 3 2 32 32 H 1.08996 * 109.47125 * 149.68826 * 7 6 5 33 33 H 1.09009 * 109.46831 * 29.69045 * 7 6 5 34 34 H 0.96991 * 119.99927 * 0.02562 * 8 7 6 35 35 H 0.97005 * 120.00106 * 0.02562 * 13 11 9 36 36 H 1.07994 * 125.80696 * 0.04829 * 15 14 13 37 37 H 0.97004 * 119.99619 * 180.02562 * 21 20 18 38 38 H 1.08006 * 126.25004 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1354 0.0000 4 6 3.6157 0.6810 0.0006 5 8 3.5847 -0.6617 0.0068 6 6 2.3085 -1.0802 0.0006 7 6 1.8521 -2.5164 0.0008 8 7 1.7047 -2.9822 -1.3803 9 6 1.3029 -4.2449 -1.6264 10 8 1.0637 -4.9963 -0.7038 11 6 1.1521 -4.7194 -3.0340 12 8 1.3919 -3.9680 -3.9569 13 7 0.7509 -5.9824 -3.2800 14 6 0.6087 -6.4281 -4.6026 15 6 0.8484 -5.6696 -5.7635 16 7 0.6130 -6.4252 -6.8059 17 7 0.2070 -7.6877 -6.3552 18 6 -0.1327 -8.7573 -7.1462 19 1 -0.4283 -9.6918 -6.6928 20 6 -0.0905 -8.6391 -8.5306 21 7 0.2689 -7.5030 -9.0818 22 14 -0.5453 -10.0967 -9.6067 23 1 -1.9453 -10.5031 -9.3238 24 1 -0.4205 -9.7145 -11.0363 25 1 0.3680 -11.2309 -9.3156 26 6 0.2141 -7.6680 -4.9910 27 1 -0.3634 0.0009 1.0276 28 1 -0.3634 0.8897 -0.5146 29 1 -0.3633 -0.8903 -0.5132 30 1 2.0367 2.1690 -0.0004 31 1 4.5060 1.2922 0.0011 32 1 0.8937 -2.5930 0.5144 33 1 2.5901 -3.1321 0.5151 34 1 1.8962 -2.3818 -2.1176 35 1 0.5596 -6.5829 -2.5426 36 1 1.1754 -4.6407 -5.7897 37 1 0.2979 -7.4205 -10.0478 38 1 -0.0464 -8.4887 -4.3391 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330381740.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:06 Heat of formation + Delta-G solvation = 34.652866 kcal Electronic energy + Delta-G solvation = -24932.956834 eV Core-core repulsion = 20972.740426 eV Total energy + Delta-G solvation = -3960.216408 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.95338 -40.50363 -39.50431 -37.97732 -35.67477 -34.47609 -34.04898 -33.16949 -31.04845 -30.33159 -28.65692 -27.99948 -26.19526 -25.07486 -23.46285 -21.80124 -21.06318 -20.49204 -20.10305 -19.48094 -18.40788 -17.49581 -17.13525 -16.75206 -16.03243 -15.88327 -15.54764 -15.26635 -15.04219 -14.76969 -14.23862 -13.97480 -13.67639 -13.49946 -13.42235 -13.19353 -13.03242 -12.98901 -12.83170 -12.57283 -11.78684 -11.74499 -11.59721 -11.29247 -11.27602 -10.91331 -10.58565 -10.30332 -9.94466 -9.44215 -9.26662 -9.23200 -8.89219 -8.75351 -8.13880 -6.79165 -6.60928 -4.28468 1.22490 1.60051 2.15839 2.53361 2.80364 2.93827 3.03479 3.07121 3.29859 3.69790 3.75781 3.97556 4.22973 4.35909 4.53165 4.56989 4.59083 4.93582 4.97546 4.99091 5.16037 5.19327 5.34236 5.45068 5.51446 5.72363 5.83326 6.00069 6.19121 6.19683 6.34837 6.73356 6.79510 6.87745 6.88886 7.13547 7.15710 7.70763 7.81620 8.06676 8.17282 8.46617 8.68224 9.30349 9.58960 10.34777 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.033737 B = 0.002178 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.750550 B =12853.489513 C =13200.041066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.147 4.147 3 C -0.216 4.216 4 C -0.025 4.025 5 O -0.169 6.169 6 C -0.044 4.044 7 C 0.204 3.796 8 N -0.703 5.703 9 C 0.518 3.482 10 O -0.526 6.526 11 C 0.484 3.516 12 O -0.521 6.521 13 N -0.582 5.582 14 C -0.070 4.070 15 C -0.026 4.026 16 N -0.261 5.261 17 N -0.138 5.138 18 C -0.322 4.322 19 H 0.118 0.882 20 C 0.046 3.954 21 N -0.768 5.768 22 Si 0.936 3.064 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.266 1.266 26 C -0.077 4.077 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.150 0.850 31 H 0.205 0.795 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.417 0.583 35 H 0.410 0.590 36 H 0.178 0.822 37 H 0.276 0.724 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.462 12.492 16.947 21.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.150 4.150 3 C -0.235 4.235 4 C -0.093 4.093 5 O -0.065 6.065 6 C -0.094 4.094 7 C 0.082 3.918 8 N -0.359 5.359 9 C 0.300 3.700 10 O -0.402 6.402 11 C 0.265 3.735 12 O -0.399 6.399 13 N -0.225 5.225 14 C -0.176 4.176 15 C -0.202 4.202 16 N -0.091 5.091 17 N 0.095 4.905 18 C -0.454 4.454 19 H 0.135 0.865 20 C -0.172 4.172 21 N -0.394 5.394 22 Si 0.760 3.240 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.191 1.191 26 C -0.229 4.229 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.168 0.832 31 H 0.222 0.778 32 H 0.121 0.879 33 H 0.108 0.892 34 H 0.254 0.746 35 H 0.245 0.755 36 H 0.194 0.806 37 H 0.087 0.913 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.721 12.321 15.453 19.950 hybrid contribution -0.163 -0.275 0.586 0.668 sum 2.558 12.046 16.040 20.222 Atomic orbital electron populations 1.20283 0.88844 1.03232 1.02386 1.20376 0.97368 0.91965 1.05257 1.21770 0.92556 0.99976 1.09203 1.24109 0.99902 0.80559 1.04771 1.84050 1.28527 1.22790 1.71093 1.21963 0.81327 0.95841 1.10275 1.19596 1.02222 0.86127 0.83898 1.45787 1.67939 1.13262 1.08868 1.20322 0.77469 0.82118 0.90103 1.90744 1.48962 1.54531 1.45960 1.19549 0.82077 0.83381 0.88507 1.90666 1.50070 1.54530 1.44596 1.42129 1.61524 1.11434 1.07365 1.17245 1.22167 0.95346 0.82819 1.24151 1.06706 1.00837 0.88512 1.78264 1.22032 0.89172 1.19666 1.44564 1.35324 1.08509 1.02063 1.19881 1.46956 0.90356 0.88218 0.86461 1.25670 0.95657 0.98281 0.97544 1.70200 1.33586 1.23458 1.12134 0.85868 0.79595 0.79993 0.78560 1.19081 1.20097 1.19086 1.21305 1.17208 0.97959 0.86391 0.91080 0.91117 0.91186 0.83208 0.77821 0.87928 0.89249 0.74627 0.75548 0.80556 0.91287 0.83313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.68 9.99 36.00 0.36 -0.32 16 2 C -0.15 -1.35 6.16 -104.74 -0.65 -1.99 16 3 C -0.22 -1.73 10.87 -39.70 -0.43 -2.17 16 4 C -0.03 -0.19 12.09 29.42 0.36 0.16 16 5 O -0.17 -1.72 10.65 5.68 0.06 -1.66 16 6 C -0.04 -0.44 6.69 -35.63 -0.24 -0.68 16 7 C 0.20 2.03 5.82 -5.19 -0.03 2.00 16 8 N -0.70 -8.49 5.54 -61.95 -0.34 -8.83 16 9 C 0.52 7.69 7.88 -11.65 -0.09 7.60 16 10 O -0.53 -8.37 16.47 5.48 0.09 -8.28 16 11 C 0.48 8.69 7.85 -11.65 -0.09 8.59 16 12 O -0.52 -10.54 13.62 5.45 0.07 -10.46 16 13 N -0.58 -10.87 5.45 -10.45 -0.06 -10.93 16 14 C -0.07 -1.61 6.90 -83.92 -0.58 -2.19 16 15 C -0.03 -0.68 10.85 -17.02 -0.18 -0.87 16 16 N -0.26 -7.47 10.39 30.81 0.32 -7.15 16 17 N -0.14 -3.74 3.73 -11.40 -0.04 -3.78 16 18 C -0.32 -8.39 10.25 -14.82 -0.15 -8.54 16 19 H 0.12 2.71 7.83 -52.49 -0.41 2.30 16 20 C 0.05 1.17 5.50 -17.50 -0.10 1.08 16 21 N -0.77 -21.14 11.81 55.50 0.66 -20.48 16 22 Si 0.94 18.64 29.55 -169.99 -5.02 13.61 16 23 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 24 H -0.28 -5.45 7.11 56.52 0.40 -5.04 16 25 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 26 C -0.08 -1.81 11.50 -16.38 -0.19 -1.99 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.48 8.14 -51.92 -0.42 0.05 16 29 H 0.07 0.56 7.78 -51.93 -0.40 0.16 16 30 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 31 H 0.21 0.79 8.06 -52.49 -0.42 0.37 16 32 H 0.10 0.91 7.76 -51.93 -0.40 0.51 16 33 H 0.09 0.87 8.14 -51.92 -0.42 0.45 16 34 H 0.42 4.99 7.93 -40.82 -0.32 4.67 16 35 H 0.41 6.54 8.29 -40.82 -0.34 6.20 16 36 H 0.18 4.44 5.92 -52.49 -0.31 4.13 16 37 H 0.28 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.15 2.91 8.06 -52.48 -0.42 2.48 16 LS Contribution 343.31 15.07 5.17 5.17 Total: -1.00 -33.22 343.31 -4.97 -38.19 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -3.86 Total: 13.91 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -2.01 Total: 0.69 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: 0.53 Total: -51.17 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: 0.23 Total: -20.40 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.02 Total: 13.61 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.22 -4.97 -38.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330381740.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.840 kcal (2) G-P(sol) polarization free energy of solvation -33.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds