Wall clock time and date at job start Tue Mar 31 2020 12:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.41386 * 126.58000 * 2 1 4 4 C 1.34517 * 106.83991 * 179.97438 * 3 2 1 5 5 O 1.34310 * 108.41854 * 359.73571 * 4 3 2 6 6 C 1.34307 * 109.47671 * 0.43736 * 5 4 3 7 7 C 1.50697 * 125.78862 * 179.82663 * 6 5 4 8 8 N 1.46502 * 109.46959 * 269.69304 * 7 6 5 9 9 C 1.34777 * 119.99692 * 180.02562 * 8 7 6 10 10 O 1.21365 * 120.00209 * 359.97438 * 9 8 7 11 11 C 1.49310 * 119.99828 * 179.97438 * 9 8 7 12 12 O 1.21401 * 120.00204 * 0.02562 * 11 9 8 13 13 N 1.34777 * 119.99824 * 179.97438 * 11 9 8 14 14 C 1.40291 * 119.99920 * 179.97438 * 13 11 9 15 15 C 1.40728 * 126.10038 * 359.96768 * 14 13 11 16 16 N 1.30869 * 108.37411 * 179.78868 * 15 14 13 17 17 N 1.40064 * 108.43837 * 0.38012 * 16 15 14 18 18 C 1.37301 * 126.05474 * 179.87893 * 17 16 15 19 19 H 1.08002 * 119.99622 * 179.68469 * 18 17 16 20 20 C 1.39003 * 119.99972 * 359.96620 * 18 17 16 21 21 N 1.31284 * 120.00043 * 359.72316 * 20 18 17 22 22 Si 1.86801 * 119.99884 * 179.72361 * 20 18 17 23 23 H 1.48504 * 109.46920 * 59.99981 * 22 20 18 24 24 H 1.48504 * 109.46970 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47038 * 299.99751 * 22 20 18 26 26 C 1.35786 * 126.10045 * 180.02562 * 14 13 11 27 27 H 1.08999 * 109.47378 * 270.04912 * 1 2 3 28 28 H 1.09010 * 109.47036 * 30.04355 * 1 2 3 29 29 H 1.09000 * 109.47174 * 150.04042 * 1 2 3 30 30 H 1.07994 * 126.57943 * 359.97438 * 3 2 1 31 31 H 1.07998 * 125.79109 * 180.02562 * 4 3 2 32 32 H 1.08996 * 109.47125 * 149.68826 * 7 6 5 33 33 H 1.09009 * 109.46831 * 29.69045 * 7 6 5 34 34 H 0.96991 * 119.99927 * 0.02562 * 8 7 6 35 35 H 0.97005 * 120.00106 * 0.02562 * 13 11 9 36 36 H 1.07994 * 125.80696 * 0.04829 * 15 14 13 37 37 H 0.97004 * 119.99619 * 180.02562 * 21 20 18 38 38 H 1.08006 * 126.25004 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1354 0.0000 4 6 3.6157 0.6810 0.0006 5 8 3.5847 -0.6617 0.0068 6 6 2.3085 -1.0802 0.0006 7 6 1.8521 -2.5164 0.0008 8 7 1.7047 -2.9822 -1.3803 9 6 1.3029 -4.2449 -1.6264 10 8 1.0637 -4.9963 -0.7038 11 6 1.1521 -4.7194 -3.0340 12 8 1.3919 -3.9680 -3.9569 13 7 0.7509 -5.9824 -3.2800 14 6 0.6087 -6.4281 -4.6026 15 6 0.8484 -5.6696 -5.7635 16 7 0.6130 -6.4252 -6.8059 17 7 0.2070 -7.6877 -6.3552 18 6 -0.1327 -8.7573 -7.1462 19 1 -0.4283 -9.6918 -6.6928 20 6 -0.0905 -8.6391 -8.5306 21 7 0.2689 -7.5030 -9.0818 22 14 -0.5453 -10.0967 -9.6067 23 1 -1.9453 -10.5031 -9.3238 24 1 -0.4205 -9.7145 -11.0363 25 1 0.3680 -11.2309 -9.3156 26 6 0.2141 -7.6680 -4.9910 27 1 -0.3634 0.0009 1.0276 28 1 -0.3634 0.8897 -0.5146 29 1 -0.3633 -0.8903 -0.5132 30 1 2.0367 2.1690 -0.0004 31 1 4.5060 1.2922 0.0011 32 1 0.8937 -2.5930 0.5144 33 1 2.5901 -3.1321 0.5151 34 1 1.8962 -2.3818 -2.1176 35 1 0.5596 -6.5829 -2.5426 36 1 1.1754 -4.6407 -5.7897 37 1 0.2979 -7.4205 -10.0478 38 1 -0.0464 -8.4887 -4.3391 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330381740.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:05 Heat of formation + Delta-G solvation = 10.297355 kcal Electronic energy + Delta-G solvation = -24934.012968 eV Core-core repulsion = 20972.740426 eV Total energy + Delta-G solvation = -3961.272542 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.61465 -42.02932 -41.16338 -39.45804 -36.77415 -35.90969 -35.07240 -34.81603 -32.30081 -31.80132 -29.95578 -29.25078 -27.38141 -26.57972 -24.80474 -22.91042 -22.43754 -21.80935 -21.28433 -20.89555 -19.73552 -19.19415 -17.98760 -17.77170 -17.43101 -17.10268 -17.04096 -16.73676 -16.22577 -15.87097 -15.71967 -15.32269 -15.09544 -14.84899 -14.74502 -14.34640 -13.99957 -13.67326 -13.64567 -13.50639 -13.38167 -13.28825 -12.97443 -12.88194 -12.56287 -12.41202 -12.13045 -11.96793 -11.05458 -10.87441 -10.69035 -10.56288 -10.46147 -10.14079 -9.46669 -8.62425 -8.48454 -6.26380 0.24887 0.48986 1.30810 1.32435 1.42246 1.57430 1.65550 1.72810 2.00666 2.03330 2.13908 2.52559 2.60917 2.93782 3.08112 3.49637 3.57933 3.91073 4.00169 4.21090 4.39653 4.40670 4.52632 4.64386 4.77897 4.83025 4.89550 4.93944 4.97154 4.99224 5.13864 5.21550 5.25955 5.30377 5.59530 5.87427 5.94807 6.14683 6.23000 6.43818 6.65676 6.73493 7.05826 7.41526 7.62917 8.50531 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.033737 B = 0.002178 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.750550 B =12853.489513 C =13200.041066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.151 4.151 3 C -0.230 4.230 4 C -0.021 4.021 5 O -0.188 6.188 6 C -0.068 4.068 7 C 0.206 3.794 8 N -0.689 5.689 9 C 0.531 3.469 10 O -0.534 6.534 11 C 0.487 3.513 12 O -0.544 6.544 13 N -0.580 5.580 14 C -0.057 4.057 15 C -0.049 4.049 16 N -0.308 5.308 17 N -0.163 5.163 18 C -0.353 4.353 19 H 0.142 0.858 20 C -0.006 4.006 21 N -0.821 5.821 22 Si 1.020 2.980 23 H -0.253 1.253 24 H -0.278 1.278 25 H -0.254 1.254 26 C -0.074 4.074 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.169 0.831 31 H 0.239 0.761 32 H 0.116 0.884 33 H 0.093 0.907 34 H 0.418 0.582 35 H 0.424 0.576 36 H 0.175 0.825 37 H 0.278 0.722 38 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.221 12.252 18.663 22.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.153 4.153 3 C -0.249 4.249 4 C -0.089 4.089 5 O -0.084 6.084 6 C -0.117 4.117 7 C 0.084 3.916 8 N -0.342 5.342 9 C 0.311 3.689 10 O -0.411 6.411 11 C 0.268 3.732 12 O -0.422 6.422 13 N -0.225 5.225 14 C -0.163 4.163 15 C -0.224 4.224 16 N -0.140 5.140 17 N 0.069 4.931 18 C -0.484 4.484 19 H 0.160 0.840 20 C -0.218 4.218 21 N -0.449 5.449 22 Si 0.838 3.162 23 H -0.177 1.177 24 H -0.203 1.203 25 H -0.178 1.178 26 C -0.225 4.225 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.187 0.813 31 H 0.255 0.745 32 H 0.134 0.866 33 H 0.111 0.889 34 H 0.255 0.745 35 H 0.262 0.738 36 H 0.192 0.808 37 H 0.088 0.912 38 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 2.483 12.101 17.234 21.204 hybrid contribution -0.026 0.006 0.238 0.239 sum 2.457 12.108 17.472 21.398 Atomic orbital electron populations 1.20335 0.87964 1.03278 1.03217 1.20712 0.98194 0.92266 1.04122 1.22101 0.92605 1.00707 1.09483 1.24878 1.01265 0.79829 1.02905 1.84036 1.28733 1.24112 1.71562 1.21918 0.81608 0.95822 1.12350 1.19721 1.03073 0.86531 0.82227 1.45810 1.66194 1.12052 1.10193 1.19582 0.78204 0.82966 0.88147 1.90752 1.49909 1.54975 1.45437 1.20197 0.80376 0.82734 0.89858 1.90659 1.50464 1.55114 1.45951 1.42057 1.62123 1.12219 1.06103 1.17280 1.20242 0.94762 0.84006 1.24250 1.07695 1.00989 0.89497 1.78159 1.23692 0.90631 1.21516 1.44845 1.36506 1.08336 1.03424 1.20625 1.47611 0.91090 0.89100 0.84039 1.26893 0.94743 1.01314 0.98816 1.70375 1.35728 1.26308 1.12484 0.84643 0.79863 0.75853 0.75804 1.17708 1.20255 1.17761 1.22017 1.15590 0.99107 0.85768 0.89820 0.90351 0.91851 0.81297 0.74474 0.86631 0.88909 0.74520 0.73762 0.80816 0.91242 0.79371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.23 9.99 71.24 0.71 -0.52 16 2 C -0.15 -2.52 6.16 -19.94 -0.12 -2.65 16 3 C -0.23 -3.23 10.87 22.19 0.24 -2.99 16 4 C -0.02 -0.28 12.09 66.97 0.81 0.53 16 5 O -0.19 -3.58 10.65 -2.59 -0.03 -3.61 16 6 C -0.07 -1.26 6.69 24.83 0.17 -1.09 16 7 C 0.21 3.81 5.82 85.63 0.50 4.31 16 8 N -0.69 -15.85 5.54 -468.28 -2.59 -18.44 16 9 C 0.53 15.07 7.88 87.23 0.69 15.76 16 10 O -0.53 -16.01 16.47 -3.29 -0.05 -16.07 16 11 C 0.49 17.16 7.85 87.23 0.69 17.85 16 12 O -0.54 -22.11 13.62 -3.41 -0.05 -22.16 16 13 N -0.58 -21.13 5.45 -305.33 -1.66 -22.79 16 14 C -0.06 -2.60 6.90 37.83 0.26 -2.34 16 15 C -0.05 -2.61 10.85 85.44 0.93 -1.68 16 16 N -0.31 -18.30 10.39 -56.44 -0.59 -18.89 16 17 N -0.16 -8.96 3.73 -189.97 -0.71 -9.67 16 18 C -0.35 -18.46 10.25 84.02 0.86 -17.60 16 19 H 0.14 6.38 7.83 -2.91 -0.02 6.36 16 20 C -0.01 -0.28 5.50 84.96 0.47 0.18 16 21 N -0.82 -46.75 11.81 21.66 0.26 -46.50 16 22 Si 1.02 38.01 29.55 68.60 2.03 40.03 16 23 H -0.25 -8.82 7.11 99.48 0.71 -8.11 16 24 H -0.28 -10.26 7.11 99.48 0.71 -9.55 16 25 H -0.25 -8.85 7.11 99.48 0.71 -8.15 16 26 C -0.07 -3.41 11.50 83.41 0.96 -2.45 16 27 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.06 0.93 7.78 -2.39 -0.02 0.91 16 30 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 31 H 0.24 1.14 8.06 -2.91 -0.02 1.12 16 32 H 0.12 1.85 7.76 -2.39 -0.02 1.83 16 33 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.42 9.70 7.93 -92.71 -0.74 8.96 16 35 H 0.42 12.82 8.29 -92.70 -0.77 12.05 16 36 H 0.18 9.12 5.92 -2.91 -0.02 9.10 16 37 H 0.28 14.54 8.31 -92.71 -0.77 13.77 16 38 H 0.19 6.90 8.06 -2.91 -0.02 6.87 16 Total: -1.00 -73.97 343.31 3.39 -70.58 By element: Atomic # 1 Polarization: 40.56 SS G_CDS: -0.36 Total: 40.20 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: 7.15 Total: 7.32 kcal Atomic # 7 Polarization: -111.00 SS G_CDS: -5.30 Total: -116.30 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -0.13 Total: -41.84 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 2.03 Total: 40.03 kcal Total: -73.97 3.39 -70.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330381740.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.874 kcal (2) G-P(sol) polarization free energy of solvation -73.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds