Wall clock time and date at job start Tue Mar 31 2020 12:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38270 * 119.97574 * 2 1 4 4 C 1.38172 * 120.02408 * 180.30141 * 3 2 1 5 5 C 1.38483 * 119.97522 * 359.41225 * 4 3 2 6 6 F 1.35096 * 120.02661 * 180.30392 * 5 4 3 7 7 C 1.38447 * 119.94815 * 0.28511 * 5 4 3 8 8 C 1.50693 * 120.01413 * 180.02562 * 7 5 4 9 9 C 1.50698 * 109.47267 * 279.99962 * 8 7 5 10 10 O 1.20829 * 120.00096 * 0.02562 * 9 8 7 11 11 O 1.34228 * 120.00143 * 180.02562 * 9 8 7 12 12 C 1.45207 * 117.00105 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.46540 * 330.00302 * 12 11 9 14 14 C 1.50706 * 109.47068 * 89.99777 * 12 11 9 15 15 H 1.08000 * 119.99887 * 240.00655 * 14 12 11 16 16 C 1.37878 * 119.99949 * 59.99981 * 14 12 11 17 17 N 1.31517 * 119.99696 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 120.00049 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47207 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46860 * 120.00035 * 18 16 14 21 21 H 1.48498 * 109.47328 * 240.00081 * 18 16 14 22 22 C 1.50693 * 109.47140 * 210.00063 * 12 11 9 23 23 C 1.34513 * 125.78749 * 144.71654 * 22 12 11 24 24 C 1.41395 * 106.83604 * 179.88863 * 23 22 12 25 25 C 1.34509 * 106.84039 * 0.37167 * 24 23 22 26 26 O 1.34299 * 108.42533 * 359.76993 * 25 24 23 27 27 C 1.38220 * 119.97159 * 359.97438 * 7 5 4 28 28 H 1.09004 * 109.47666 * 270.30754 * 1 2 3 29 29 H 1.09006 * 109.46898 * 30.30122 * 1 2 3 30 30 H 1.09001 * 109.47521 * 150.30260 * 1 2 3 31 31 H 1.07998 * 119.98571 * 0.02562 * 3 2 1 32 32 H 1.08002 * 120.01574 * 179.69763 * 4 3 2 33 33 H 1.09006 * 109.47208 * 39.99730 * 8 7 5 34 34 H 1.08998 * 109.47243 * 159.99557 * 8 7 5 35 35 H 0.97006 * 119.99710 * 179.97438 * 17 16 14 36 36 H 1.07990 * 126.58419 * 0.02562 * 23 22 12 37 37 H 1.08002 * 126.57411 * 180.16547 * 24 23 22 38 38 H 1.08004 * 125.78846 * 179.75355 * 25 24 23 39 39 H 1.07994 * 119.98566 * 180.02562 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5795 1.1989 -0.0063 5 6 4.2725 -0.0001 -0.0003 6 9 5.6235 -0.0001 -0.0002 7 6 3.5797 -1.1987 0.0060 8 6 4.3323 -2.5043 0.0131 9 6 4.7971 -2.8238 -1.3843 10 8 4.5437 -2.0685 -2.2928 11 8 5.4926 -3.9474 -1.6198 12 6 5.9074 -4.1910 -2.9899 13 1 5.1847 -3.7448 -3.6730 14 6 7.2635 -3.5755 -3.2211 15 1 7.3891 -2.8139 -3.9765 16 6 8.3437 -3.9846 -2.4683 17 7 8.1907 -4.9124 -1.5487 18 14 10.0247 -3.2223 -2.7553 19 1 9.9309 -2.2102 -3.8380 20 1 10.4915 -2.5685 -1.5063 21 1 10.9879 -4.2815 -3.1495 22 6 5.9811 -5.6759 -3.2359 23 6 5.6709 -6.2988 -4.3871 24 6 5.8855 -7.6803 -4.1758 25 6 6.3061 -7.8196 -2.9058 26 8 6.3622 -6.6023 -2.3413 27 6 2.1975 -1.1974 0.0069 28 1 -0.3634 0.0055 1.0277 29 1 -0.3633 0.8873 -0.5185 30 1 -0.3634 -0.8927 -0.5091 31 1 1.6572 2.1327 0.0004 32 1 4.1190 2.1346 -0.0112 33 1 5.1957 -2.4224 0.6734 34 1 3.6770 -3.2994 0.3689 35 1 8.9508 -5.2005 -1.0193 36 1 5.3264 -5.8330 -5.2984 37 1 5.7367 -8.4721 -4.8952 38 1 6.5561 -8.7523 -2.4220 39 1 1.6569 -2.1322 0.0122 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345546433.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:45 Heat of formation + Delta-G solvation = -92.458546 kcal Electronic energy + Delta-G solvation = -26338.350716 eV Core-core repulsion = 22320.409630 eV Total energy + Delta-G solvation = -4017.941085 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.60504 -41.30798 -39.62622 -38.72062 -35.49793 -33.23833 -32.90480 -31.97865 -31.82673 -29.90111 -28.01148 -26.57595 -26.37370 -23.37843 -22.54860 -21.35294 -20.60451 -19.60074 -19.38800 -17.37723 -17.12429 -16.63691 -16.51996 -16.21801 -15.35629 -15.15520 -15.02628 -14.74391 -14.47291 -14.40495 -13.98832 -13.68792 -13.37225 -13.26874 -13.11828 -12.73236 -12.26046 -11.99598 -11.85559 -11.76336 -11.61615 -11.52060 -11.38307 -11.28450 -11.02136 -10.94937 -10.89195 -10.31875 -9.82074 -9.53622 -9.06021 -8.90198 -8.81273 -8.73654 -8.34346 -7.33595 -6.20999 -4.42321 1.20934 1.27351 2.91687 3.20314 3.26758 3.29266 3.34855 3.47551 3.63591 4.04912 4.26434 4.28512 4.44494 4.64497 4.75883 4.83182 5.11900 5.16949 5.20106 5.45627 5.48197 5.61093 5.65876 5.75150 5.77916 5.89750 5.96548 6.01478 6.12582 6.24679 6.36292 6.39418 6.48544 6.50049 6.81202 6.89896 6.98308 7.21331 7.49044 7.64516 7.79421 7.83384 8.41741 8.60934 8.99297 9.31554 10.78281 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.014697 B = 0.004225 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.694213 B = 6625.829986 C = 7975.276261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.102 4.102 3 C -0.095 4.095 4 C -0.152 4.152 5 C 0.115 3.885 6 F -0.132 7.132 7 C -0.093 4.093 8 C -0.080 4.080 9 C 0.462 3.538 10 O -0.523 6.523 11 O -0.334 6.334 12 C 0.279 3.721 13 H 0.071 0.929 14 C -0.547 4.547 15 H 0.074 0.926 16 C 0.081 3.919 17 N -0.827 5.827 18 Si 0.896 3.104 19 H -0.268 1.268 20 H -0.279 1.279 21 H -0.280 1.280 22 C 0.082 3.918 23 C -0.265 4.265 24 C -0.221 4.221 25 C -0.082 4.082 26 O -0.117 6.117 27 C -0.081 4.081 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.129 0.871 32 H 0.133 0.867 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.267 0.733 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.183 0.817 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.797 4.832 5.572 13.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.103 4.103 3 C -0.114 4.114 4 C -0.171 4.171 5 C 0.096 3.904 6 F -0.111 7.111 7 C -0.094 4.094 8 C -0.118 4.118 9 C 0.305 3.695 10 O -0.414 6.414 11 O -0.249 6.249 12 C 0.227 3.773 13 H 0.088 0.912 14 C -0.583 4.583 15 H 0.092 0.908 16 C -0.130 4.130 17 N -0.460 5.460 18 Si 0.723 3.277 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.206 1.206 22 C 0.029 3.971 23 C -0.284 4.284 24 C -0.240 4.240 25 C -0.151 4.151 26 O -0.009 6.009 27 C -0.099 4.099 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.146 0.854 32 H 0.151 0.849 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.077 0.923 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.200 0.800 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.612 4.943 5.723 13.857 hybrid contribution 1.471 0.148 -0.543 1.575 sum -10.141 5.090 5.180 12.473 Atomic orbital electron populations 1.20747 0.90830 1.02920 1.02189 1.19866 0.96310 0.92858 1.01225 1.20809 0.92972 0.97828 0.99748 1.21068 0.95000 0.96866 1.04173 1.17541 0.77155 0.94024 1.01685 1.91534 1.28686 1.97331 1.93505 1.19465 0.94181 0.93188 1.02584 1.20225 1.01709 0.94913 0.94931 1.22854 0.75381 0.80851 0.90387 1.90566 1.55272 1.49193 1.46397 1.86720 1.62783 1.38920 1.36519 1.18793 0.96138 0.83831 0.78532 0.91162 1.21290 0.91627 1.23436 1.21919 0.90767 1.25151 0.99548 0.94009 0.94248 1.70060 1.31217 1.25722 1.18985 0.86457 0.83190 0.79446 0.78656 1.19251 1.20437 1.20554 1.22817 0.95449 0.90627 0.88217 1.21166 1.14291 0.93446 0.99545 1.21493 1.08885 0.96507 0.97161 1.23784 1.08019 0.88618 0.94689 1.84414 1.64227 1.13504 1.38723 1.20780 0.92130 0.98217 0.98752 0.91239 0.91551 0.91400 0.85358 0.84868 0.87013 0.87177 0.92341 0.84954 0.85163 0.80025 0.85113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.01 36.01 0.36 -0.54 16 2 C -0.10 -1.18 5.88 -104.62 -0.62 -1.80 16 3 C -0.10 -1.09 9.70 -39.59 -0.38 -1.47 16 4 C -0.15 -2.04 10.03 -39.52 -0.40 -2.44 16 5 C 0.12 1.91 7.13 -39.41 -0.28 1.63 16 6 F -0.13 -2.50 16.66 2.25 0.04 -2.46 16 7 C -0.09 -1.49 4.43 -104.55 -0.46 -1.96 16 8 C -0.08 -1.37 5.67 -29.04 -0.16 -1.54 16 9 C 0.46 10.45 7.91 36.00 0.28 10.74 16 10 O -0.52 -12.94 15.17 -18.75 -0.28 -13.22 16 11 O -0.33 -8.51 9.25 -42.05 -0.39 -8.90 16 12 C 0.28 7.34 2.58 -29.04 -0.07 7.26 16 13 H 0.07 1.82 7.16 -51.93 -0.37 1.45 16 14 C -0.55 -15.34 8.91 -34.44 -0.31 -15.65 16 15 H 0.07 2.09 7.81 -52.49 -0.41 1.68 16 16 C 0.08 2.22 5.24 -17.82 -0.09 2.13 16 17 N -0.83 -23.02 10.64 55.43 0.59 -22.43 16 18 Si 0.90 21.29 29.54 -169.99 -5.02 16.26 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 C 0.08 2.07 5.58 -35.63 -0.20 1.87 16 23 C -0.27 -5.94 10.81 -39.70 -0.43 -6.36 16 24 C -0.22 -4.40 10.91 -39.70 -0.43 -4.83 16 25 C -0.08 -1.67 12.09 29.41 0.36 -1.32 16 26 O -0.12 -2.92 8.89 2.02 0.02 -2.90 16 27 C -0.08 -1.07 9.32 -39.59 -0.37 -1.44 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 30 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 31 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 33 H 0.11 1.89 7.95 -51.93 -0.41 1.48 16 34 H 0.11 1.53 8.00 -51.93 -0.42 1.12 16 35 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.13 2.69 8.06 -52.49 -0.42 2.27 16 37 H 0.13 2.14 8.06 -52.49 -0.42 1.71 16 38 H 0.18 2.91 8.06 -52.48 -0.42 2.48 16 39 H 0.13 1.45 8.04 -52.49 -0.42 1.03 16 LS Contribution 349.52 15.07 5.27 5.27 Total: -1.00 -32.92 349.52 -7.53 -40.45 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -4.54 Total: 3.63 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: -3.21 Total: -15.71 kcal Atomic # 7 Polarization: -23.02 SS G_CDS: 0.59 Total: -22.43 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.66 Total: -25.02 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.04 Total: -2.46 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.92 -7.53 -40.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345546433.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.007 kcal (2) G-P(sol) polarization free energy of solvation -32.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds