Wall clock time and date at job start Tue Mar 31 2020 12:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38270 * 119.97574 * 2 1 4 4 C 1.38172 * 120.02408 * 180.30141 * 3 2 1 5 5 C 1.38483 * 119.97522 * 359.41225 * 4 3 2 6 6 F 1.35096 * 120.02661 * 180.30392 * 5 4 3 7 7 C 1.38447 * 119.94815 * 0.28511 * 5 4 3 8 8 C 1.50693 * 120.01413 * 180.02562 * 7 5 4 9 9 C 1.50698 * 109.47267 * 279.99962 * 8 7 5 10 10 O 1.20829 * 120.00096 * 0.02562 * 9 8 7 11 11 O 1.34228 * 120.00143 * 180.02562 * 9 8 7 12 12 C 1.45207 * 117.00105 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.46540 * 330.00302 * 12 11 9 14 14 C 1.50706 * 109.47068 * 89.99777 * 12 11 9 15 15 H 1.08000 * 119.99887 * 240.00655 * 14 12 11 16 16 C 1.37878 * 119.99949 * 59.99981 * 14 12 11 17 17 N 1.31517 * 119.99696 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 120.00049 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47207 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46860 * 120.00035 * 18 16 14 21 21 H 1.48498 * 109.47328 * 240.00081 * 18 16 14 22 22 C 1.50693 * 109.47140 * 210.00063 * 12 11 9 23 23 C 1.34513 * 125.78749 * 144.71654 * 22 12 11 24 24 C 1.41395 * 106.83604 * 179.88863 * 23 22 12 25 25 C 1.34509 * 106.84039 * 0.37167 * 24 23 22 26 26 O 1.34299 * 108.42533 * 359.76993 * 25 24 23 27 27 C 1.38220 * 119.97159 * 359.97438 * 7 5 4 28 28 H 1.09004 * 109.47666 * 270.30754 * 1 2 3 29 29 H 1.09006 * 109.46898 * 30.30122 * 1 2 3 30 30 H 1.09001 * 109.47521 * 150.30260 * 1 2 3 31 31 H 1.07998 * 119.98571 * 0.02562 * 3 2 1 32 32 H 1.08002 * 120.01574 * 179.69763 * 4 3 2 33 33 H 1.09006 * 109.47208 * 39.99730 * 8 7 5 34 34 H 1.08998 * 109.47243 * 159.99557 * 8 7 5 35 35 H 0.97006 * 119.99710 * 179.97438 * 17 16 14 36 36 H 1.07990 * 126.58419 * 0.02562 * 23 22 12 37 37 H 1.08002 * 126.57411 * 180.16547 * 24 23 22 38 38 H 1.08004 * 125.78846 * 179.75355 * 25 24 23 39 39 H 1.07994 * 119.98566 * 180.02562 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5795 1.1989 -0.0063 5 6 4.2725 -0.0001 -0.0003 6 9 5.6235 -0.0001 -0.0002 7 6 3.5797 -1.1987 0.0060 8 6 4.3323 -2.5043 0.0131 9 6 4.7971 -2.8238 -1.3843 10 8 4.5437 -2.0685 -2.2928 11 8 5.4926 -3.9474 -1.6198 12 6 5.9074 -4.1910 -2.9899 13 1 5.1847 -3.7448 -3.6730 14 6 7.2635 -3.5755 -3.2211 15 1 7.3891 -2.8139 -3.9765 16 6 8.3437 -3.9846 -2.4683 17 7 8.1907 -4.9124 -1.5487 18 14 10.0247 -3.2223 -2.7553 19 1 9.9309 -2.2102 -3.8380 20 1 10.4915 -2.5685 -1.5063 21 1 10.9879 -4.2815 -3.1495 22 6 5.9811 -5.6759 -3.2359 23 6 5.6709 -6.2988 -4.3871 24 6 5.8855 -7.6803 -4.1758 25 6 6.3061 -7.8196 -2.9058 26 8 6.3622 -6.6023 -2.3413 27 6 2.1975 -1.1974 0.0069 28 1 -0.3634 0.0055 1.0277 29 1 -0.3633 0.8873 -0.5185 30 1 -0.3634 -0.8927 -0.5091 31 1 1.6572 2.1327 0.0004 32 1 4.1190 2.1346 -0.0112 33 1 5.1957 -2.4224 0.6734 34 1 3.6770 -3.2994 0.3689 35 1 8.9508 -5.2005 -1.0193 36 1 5.3264 -5.8330 -5.2984 37 1 5.7367 -8.4721 -4.8952 38 1 6.5561 -8.7523 -2.4220 39 1 1.6569 -2.1322 0.0122 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345546433.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:44 Heat of formation + Delta-G solvation = -109.558823 kcal Electronic energy + Delta-G solvation = -26339.092239 eV Core-core repulsion = 22320.409630 eV Total energy + Delta-G solvation = -4018.682609 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.91936 -43.05090 -41.20031 -40.02101 -37.37058 -34.97506 -34.39750 -33.57392 -32.95772 -31.72567 -29.29628 -28.32123 -27.39386 -25.23437 -23.70622 -22.73504 -22.20360 -21.24033 -21.03910 -19.06680 -18.56202 -18.34245 -18.05962 -17.69886 -17.06973 -16.83080 -16.49875 -16.27436 -16.22399 -15.91502 -15.00830 -14.99486 -14.63461 -14.45971 -14.39835 -14.24062 -13.65972 -13.54870 -13.42696 -13.35939 -13.07075 -12.95166 -12.86723 -12.77423 -12.52418 -12.41207 -12.22661 -11.95068 -11.87129 -11.37801 -11.01779 -10.83312 -10.50087 -9.94952 -9.40328 -9.09018 -8.26171 -6.56273 0.12598 0.24545 1.17367 1.31795 1.35021 1.44832 1.48513 1.90474 2.17446 2.30107 2.58164 2.67722 3.06265 3.35507 3.46604 3.73504 3.93049 3.97759 4.20981 4.29459 4.32704 4.39420 4.41902 4.46415 4.50687 4.62512 4.73145 4.92744 4.97194 5.01556 5.12740 5.19798 5.22982 5.30215 5.33761 5.41881 5.54200 5.56316 5.76943 5.87932 5.94741 5.98826 6.47905 6.70442 7.09472 7.23263 8.71871 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.014697 B = 0.004225 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.694213 B = 6625.829986 C = 7975.276261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.097 4.097 3 C -0.089 4.089 4 C -0.156 4.156 5 C 0.072 3.928 6 F -0.158 7.158 7 C -0.116 4.116 8 C -0.070 4.070 9 C 0.453 3.547 10 O -0.551 6.551 11 O -0.349 6.349 12 C 0.279 3.721 13 H 0.056 0.944 14 C -0.577 4.577 15 H 0.057 0.943 16 C 0.044 3.956 17 N -0.845 5.845 18 Si 0.953 3.047 19 H -0.271 1.271 20 H -0.273 1.273 21 H -0.268 1.268 22 C 0.042 3.958 23 C -0.264 4.264 24 C -0.218 4.218 25 C -0.081 4.081 26 O -0.146 6.146 27 C -0.088 4.088 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.167 0.833 32 H 0.149 0.851 33 H 0.108 0.892 34 H 0.143 0.857 35 H 0.269 0.731 36 H 0.144 0.856 37 H 0.171 0.829 38 H 0.226 0.774 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.407 4.506 5.968 15.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.097 4.097 3 C -0.106 4.106 4 C -0.174 4.174 5 C 0.053 3.947 6 F -0.137 7.137 7 C -0.117 4.117 8 C -0.107 4.107 9 C 0.298 3.702 10 O -0.443 6.443 11 O -0.264 6.264 12 C 0.227 3.773 13 H 0.074 0.926 14 C -0.613 4.613 15 H 0.075 0.925 16 C -0.165 4.165 17 N -0.478 5.478 18 Si 0.777 3.223 19 H -0.196 1.196 20 H -0.199 1.199 21 H -0.193 1.193 22 C -0.011 4.011 23 C -0.284 4.284 24 C -0.237 4.237 25 C -0.149 4.149 26 O -0.039 6.039 27 C -0.106 4.106 28 H 0.107 0.893 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.184 0.816 32 H 0.167 0.833 33 H 0.126 0.874 34 H 0.161 0.839 35 H 0.078 0.922 36 H 0.162 0.838 37 H 0.188 0.812 38 H 0.242 0.758 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -13.236 4.614 6.125 15.297 hybrid contribution 1.805 0.246 -0.681 1.945 sum -11.431 4.861 5.444 13.562 Atomic orbital electron populations 1.20838 0.87934 1.04007 1.03729 1.20355 0.98339 0.92144 0.98843 1.21293 0.92120 0.99528 0.97682 1.21374 0.96164 0.96369 1.03530 1.18060 0.76396 0.95756 1.04527 1.91455 1.30650 1.97522 1.94092 1.19519 0.95369 0.92135 1.04636 1.20268 1.02370 0.97088 0.90976 1.23927 0.74335 0.79556 0.92367 1.90526 1.56243 1.49643 1.47914 1.86694 1.63570 1.40236 1.35948 1.18600 0.94941 0.85193 0.78584 0.92577 1.21409 0.93344 1.24078 1.22502 0.92517 1.25765 1.02396 0.94381 0.93936 1.70155 1.32005 1.26301 1.19303 0.85596 0.79429 0.78829 0.78484 1.19593 1.19880 1.19285 1.22671 0.98576 0.90401 0.89468 1.21551 1.12864 0.94955 0.99006 1.21903 1.07937 0.96060 0.97802 1.24734 1.06454 0.88480 0.95217 1.84348 1.64928 1.14956 1.39669 1.21099 0.91053 1.00101 0.98313 0.89305 0.89901 0.90959 0.81567 0.83286 0.87375 0.83916 0.92154 0.83780 0.81150 0.75773 0.83175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 10.01 71.24 0.71 -0.65 16 2 C -0.10 -1.97 5.88 -19.86 -0.12 -2.09 16 3 C -0.09 -1.79 9.70 22.26 0.22 -1.57 16 4 C -0.16 -4.08 10.03 22.31 0.22 -3.86 16 5 C 0.07 2.45 7.13 22.38 0.16 2.61 16 6 F -0.16 -6.40 16.66 44.97 0.75 -5.65 16 7 C -0.12 -3.76 4.43 -19.82 -0.09 -3.84 16 8 C -0.07 -2.47 5.67 29.10 0.16 -2.31 16 9 C 0.45 21.51 7.91 71.24 0.56 22.08 16 10 O -0.55 -28.74 15.17 21.95 0.33 -28.41 16 11 O -0.35 -18.64 9.25 -48.73 -0.45 -19.10 16 12 C 0.28 15.43 2.58 29.10 0.07 15.51 16 13 H 0.06 3.12 7.16 -2.39 -0.02 3.10 16 14 C -0.58 -33.96 8.91 25.60 0.23 -33.73 16 15 H 0.06 3.40 7.81 -2.91 -0.02 3.37 16 16 C 0.04 2.47 5.24 84.65 0.44 2.91 16 17 N -0.84 -48.04 10.64 21.45 0.23 -47.81 16 18 Si 0.95 44.63 29.54 68.60 2.03 46.66 16 19 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 20 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 C 0.04 2.14 5.58 24.83 0.14 2.27 16 23 C -0.26 -11.78 10.81 22.19 0.24 -11.54 16 24 C -0.22 -8.17 10.91 22.19 0.24 -7.93 16 25 C -0.08 -3.14 12.09 66.97 0.81 -2.33 16 26 O -0.15 -7.31 8.89 0.99 0.01 -7.30 16 27 C -0.09 -2.21 9.32 22.26 0.21 -2.01 16 28 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 29 H 0.08 0.81 8.09 -2.38 -0.02 0.79 16 30 H 0.07 0.88 8.09 -2.39 -0.02 0.86 16 31 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 32 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 33 H 0.11 3.87 7.95 -2.38 -0.02 3.85 16 34 H 0.14 3.96 8.00 -2.39 -0.02 3.94 16 35 H 0.27 14.39 8.31 -92.70 -0.77 13.62 16 36 H 0.14 5.87 8.06 -2.92 -0.02 5.85 16 37 H 0.17 4.89 8.06 -2.91 -0.02 4.87 16 38 H 0.23 6.40 8.06 -2.91 -0.02 6.38 16 39 H 0.15 3.06 8.04 -2.91 -0.02 3.03 16 Total: -1.00 -75.55 349.52 8.19 -67.36 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 1.07 Total: 20.72 kcal Atomic # 6 Polarization: -30.70 SS G_CDS: 4.22 Total: -26.47 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: 0.23 Total: -47.81 kcal Atomic # 8 Polarization: -54.70 SS G_CDS: -0.11 Total: -54.81 kcal Atomic # 9 Polarization: -6.40 SS G_CDS: 0.75 Total: -5.65 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -75.55 8.19 -67.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345546433.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.195 kcal (2) G-P(sol) polarization free energy of solvation -75.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds