Wall clock time and date at job start Tue Mar 31 2020 12:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00248 * 2 1 4 4 H 1.48497 * 109.47051 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47122 * 300.00296 * 3 2 1 6 6 H 1.48503 * 109.46700 * 60.00679 * 3 2 1 7 7 C 1.37880 * 119.99525 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99721 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00561 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46727 * 300.00185 * 9 7 2 11 11 O 1.45192 * 109.47338 * 179.97438 * 9 7 2 12 12 C 1.34234 * 116.99876 * 149.99830 * 11 9 7 13 13 O 1.20819 * 119.99970 * 0.02562 * 12 11 9 14 14 C 1.50697 * 120.00031 * 180.02562 * 12 11 9 15 15 H 1.09002 * 109.47517 * 14.99591 * 14 12 11 16 16 F 1.39906 * 109.47171 * 254.99942 * 14 12 11 17 17 C 1.52995 * 109.47258 * 135.00161 * 14 12 11 18 18 C 1.50707 * 109.47301 * 184.99731 * 17 14 12 19 19 C 1.38238 * 119.99792 * 90.00016 * 18 17 14 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.97953 * 18 17 14 24 24 C 1.50703 * 109.46821 * 59.99861 * 9 7 2 25 25 C 1.34508 * 125.78833 * 265.00111 * 24 9 7 26 26 C 1.41390 * 106.84174 * 180.02562 * 25 24 9 27 27 C 1.34513 * 106.83915 * 0.02562 * 26 25 24 28 28 O 1.34302 * 125.79170 * 84.69818 * 24 9 7 29 29 H 0.97000 * 119.99722 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.47610 * 65.00034 * 17 14 12 31 31 H 1.09000 * 109.47256 * 304.99375 * 17 14 12 32 32 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 33 33 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 34 34 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 35 35 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 36 36 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 37 37 H 1.08001 * 126.58616 * 0.04147 * 25 24 9 38 38 H 1.07997 * 126.58361 * 179.97438 * 26 25 24 39 39 H 1.07992 * 125.79307 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8897 11 8 2.1945 -3.6028 -0.0018 12 6 1.8036 -4.7394 0.5961 13 8 0.7092 -4.8098 1.1032 14 6 2.7298 -5.9275 0.6348 15 1 3.7403 -5.6090 0.3786 16 9 2.2959 -6.8872 -0.2860 17 6 2.7263 -6.5313 2.0406 18 6 3.7429 -7.6415 2.1130 19 6 5.0445 -7.3636 2.4863 20 6 5.9768 -8.3821 2.5533 21 6 5.6073 -9.6785 2.2474 22 6 4.3070 -9.9556 1.8689 23 6 3.3735 -8.9379 1.8064 24 6 0.3841 -2.5787 -1.2307 25 6 -0.9145 -2.2352 -1.3014 26 6 -1.3279 -2.4683 -2.6333 27 6 -0.2573 -2.9408 -3.2966 28 8 0.7785 -2.9991 -2.4437 29 1 -0.4850 0.8401 0.0004 30 1 1.7364 -6.9301 2.2623 31 1 2.9786 -5.7598 2.7680 32 1 5.3331 -6.3507 2.7258 33 1 6.9938 -8.1649 2.8446 34 1 6.3356 -10.4743 2.3001 35 1 4.0193 -10.9678 1.6257 36 1 2.3564 -9.1551 1.5155 37 1 -1.5243 -1.8542 -0.4956 38 1 -2.3142 -2.3001 -3.0399 39 1 -0.2331 -3.2201 -4.3395 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345546827.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:45 Heat of formation + Delta-G solvation = -96.170522 kcal Electronic energy + Delta-G solvation = -25959.494420 eV Core-core repulsion = 21941.392371 eV Total energy + Delta-G solvation = -4018.102049 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -47.79875 -41.37421 -39.70551 -39.26565 -36.00653 -33.82485 -33.37327 -31.71106 -31.01986 -30.08716 -29.23925 -26.76907 -25.16302 -23.00147 -22.70306 -21.38431 -20.70199 -20.30069 -19.39341 -17.85027 -17.09349 -16.86673 -16.75550 -16.23420 -15.65307 -15.56985 -15.08159 -14.98133 -14.78148 -14.59217 -14.48169 -13.59123 -13.50250 -13.20870 -12.93233 -12.81341 -12.50589 -12.09569 -12.03827 -11.80532 -11.61775 -11.38458 -11.30159 -11.20035 -11.11868 -11.08210 -11.00153 -10.42701 -10.24038 -9.80288 -9.50300 -9.04633 -8.87519 -8.86321 -8.67732 -7.28098 -6.26783 -4.46798 1.16439 1.27727 2.53273 2.81562 3.09789 3.17484 3.25016 3.30943 3.65066 3.90785 4.15402 4.19962 4.45320 4.61516 4.69560 4.85088 4.88326 4.97670 5.01092 5.01690 5.29126 5.37605 5.42019 5.69039 5.71905 5.81623 5.91259 5.94440 6.05315 6.31626 6.32897 6.37316 6.49129 6.57271 6.86113 6.95504 7.08509 7.20849 7.27904 7.61794 7.67484 7.76137 8.20413 8.39545 8.67633 9.20491 10.70474 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.016870 B = 0.003427 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.310891 B = 8169.310207 C = 9262.657876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.069 3.931 3 Si 0.915 3.085 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.531 4.531 8 H 0.079 0.921 9 C 0.298 3.702 10 H 0.080 0.920 11 O -0.340 6.340 12 C 0.434 3.566 13 O -0.494 6.494 14 C 0.115 3.885 15 H 0.113 0.887 16 F -0.185 7.185 17 C -0.100 4.100 18 C -0.085 4.085 19 C -0.112 4.112 20 C -0.121 4.121 21 C -0.122 4.122 22 C -0.121 4.121 23 C -0.103 4.103 24 C 0.016 3.984 25 C -0.172 4.172 26 C -0.220 4.220 27 C -0.086 4.086 28 O -0.178 6.178 29 H 0.269 0.731 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.126 0.874 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.146 0.854 38 H 0.131 0.869 39 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.264 -14.039 2.984 16.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.136 4.136 3 Si 0.742 3.258 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.568 4.568 8 H 0.098 0.902 9 C 0.245 3.755 10 H 0.098 0.902 11 O -0.255 6.255 12 C 0.274 3.726 13 O -0.381 6.381 14 C 0.078 3.922 15 H 0.131 0.869 16 F -0.165 7.165 17 C -0.138 4.138 18 C -0.085 4.085 19 C -0.130 4.130 20 C -0.139 4.139 21 C -0.141 4.141 22 C -0.139 4.139 23 C -0.121 4.121 24 C -0.035 4.035 25 C -0.192 4.192 26 C -0.239 4.239 27 C -0.154 4.154 28 O -0.075 6.075 29 H 0.079 0.921 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.144 0.856 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.143 0.857 37 H 0.164 0.836 38 H 0.149 0.851 39 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 7.028 -13.991 3.037 15.948 hybrid contribution -0.181 1.114 -0.390 1.194 sum 6.846 -12.876 2.647 14.822 Atomic orbital electron populations 1.70038 1.05960 1.27650 1.46444 1.24952 0.95161 0.99613 0.93922 0.86152 0.79994 0.81817 0.77860 1.19233 1.20625 1.20488 1.20930 0.94225 0.87400 1.54285 0.90241 1.19286 0.85564 0.81524 0.89092 0.90248 1.86571 1.48609 1.21783 1.68572 1.23733 0.86995 0.85652 0.76253 1.90644 1.21964 1.83054 1.42452 1.21105 0.98513 0.83498 0.89107 0.86869 1.92890 1.91667 1.64103 1.67885 1.21098 1.00475 0.97570 0.94622 1.19685 0.94369 0.94315 1.00142 1.21146 0.92612 0.99669 0.99568 1.21136 0.99440 0.92989 1.00356 1.21168 0.96352 0.96782 0.99751 1.21149 0.93529 0.99179 1.00069 1.21140 1.00018 0.92257 0.98686 1.23508 0.94442 1.00332 0.85236 1.21292 0.95087 1.05715 0.97076 1.21726 0.99386 1.07165 0.95647 1.23622 0.86607 1.09355 0.95789 1.83988 1.37388 1.67025 1.19065 0.92108 0.88260 0.88204 0.85585 0.85984 0.86224 0.86048 0.85732 0.83604 0.85078 0.79827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.45 10.48 55.43 0.58 -22.87 16 2 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 3 Si 0.92 20.47 29.54 -169.99 -5.02 15.45 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 7 C -0.53 -14.35 8.89 -34.44 -0.31 -14.66 16 8 H 0.08 2.10 7.81 -52.48 -0.41 1.69 16 9 C 0.30 7.78 2.41 -29.03 -0.07 7.71 16 10 H 0.08 2.19 7.16 -51.93 -0.37 1.82 16 11 O -0.34 -7.89 9.84 -42.03 -0.41 -8.31 16 12 C 0.43 8.82 7.26 36.00 0.26 9.08 16 13 O -0.49 -11.16 15.82 -18.74 -0.30 -11.46 16 14 C 0.12 1.77 3.82 -27.89 -0.11 1.66 16 15 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 16 F -0.18 -3.06 16.75 2.25 0.04 -3.03 16 17 C -0.10 -1.27 4.82 -27.88 -0.13 -1.40 16 18 C -0.09 -0.98 5.00 -104.62 -0.52 -1.50 16 19 C -0.11 -1.16 9.70 -39.58 -0.38 -1.54 16 20 C -0.12 -1.13 10.05 -39.58 -0.40 -1.52 16 21 C -0.12 -1.11 10.05 -39.58 -0.40 -1.50 16 22 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 23 C -0.10 -1.14 9.55 -39.58 -0.38 -1.52 16 24 C 0.02 0.41 5.67 -35.63 -0.20 0.21 16 25 C -0.17 -4.30 9.04 -39.70 -0.36 -4.66 16 26 C -0.22 -4.75 10.91 -39.70 -0.43 -5.18 16 27 C -0.09 -1.80 12.09 29.42 0.36 -1.45 16 28 O -0.18 -4.42 10.63 2.15 0.02 -4.39 16 29 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.10 1.29 7.99 -51.93 -0.42 0.87 16 31 H 0.10 1.14 8.09 -51.93 -0.42 0.72 16 32 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 33 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 37 H 0.15 3.73 7.49 -52.49 -0.39 3.34 16 38 H 0.13 2.39 8.06 -52.49 -0.42 1.97 16 39 H 0.18 2.91 8.06 -52.49 -0.42 2.49 16 LS Contribution 350.38 15.07 5.28 5.28 Total: -1.00 -31.19 350.38 -7.90 -39.09 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -4.53 Total: 6.34 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -3.57 Total: -16.09 kcal Atomic # 7 Polarization: -23.45 SS G_CDS: 0.58 Total: -22.87 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.69 Total: -24.16 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.04 Total: -3.03 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.19 -7.90 -39.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345546827.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.081 kcal (2) G-P(sol) polarization free energy of solvation -31.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds