Wall clock time and date at job start Tue Mar 31 2020 12:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00248 * 2 1 4 4 H 1.48497 * 109.47051 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47122 * 300.00296 * 3 2 1 6 6 H 1.48503 * 109.46700 * 60.00679 * 3 2 1 7 7 C 1.37880 * 119.99525 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99721 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00561 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46727 * 300.00185 * 9 7 2 11 11 O 1.45192 * 109.47338 * 179.97438 * 9 7 2 12 12 C 1.34234 * 116.99876 * 149.99830 * 11 9 7 13 13 O 1.20819 * 119.99970 * 0.02562 * 12 11 9 14 14 C 1.50697 * 120.00031 * 180.02562 * 12 11 9 15 15 H 1.09002 * 109.47517 * 14.99591 * 14 12 11 16 16 F 1.39906 * 109.47171 * 254.99942 * 14 12 11 17 17 C 1.52995 * 109.47258 * 135.00161 * 14 12 11 18 18 C 1.50707 * 109.47301 * 184.99731 * 17 14 12 19 19 C 1.38238 * 119.99792 * 90.00016 * 18 17 14 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.97953 * 18 17 14 24 24 C 1.50703 * 109.46821 * 59.99861 * 9 7 2 25 25 C 1.34508 * 125.78833 * 265.00111 * 24 9 7 26 26 C 1.41390 * 106.84174 * 180.02562 * 25 24 9 27 27 C 1.34513 * 106.83915 * 0.02562 * 26 25 24 28 28 O 1.34302 * 125.79170 * 84.69818 * 24 9 7 29 29 H 0.97000 * 119.99722 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.47610 * 65.00034 * 17 14 12 31 31 H 1.09000 * 109.47256 * 304.99375 * 17 14 12 32 32 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 33 33 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 34 34 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 35 35 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 36 36 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 37 37 H 1.08001 * 126.58616 * 0.04147 * 25 24 9 38 38 H 1.07997 * 126.58361 * 179.97438 * 26 25 24 39 39 H 1.07992 * 125.79307 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8897 11 8 2.1945 -3.6028 -0.0018 12 6 1.8036 -4.7394 0.5961 13 8 0.7092 -4.8098 1.1032 14 6 2.7298 -5.9275 0.6348 15 1 3.7403 -5.6090 0.3786 16 9 2.2959 -6.8872 -0.2860 17 6 2.7263 -6.5313 2.0406 18 6 3.7429 -7.6415 2.1130 19 6 5.0445 -7.3636 2.4863 20 6 5.9768 -8.3821 2.5533 21 6 5.6073 -9.6785 2.2474 22 6 4.3070 -9.9556 1.8689 23 6 3.3735 -8.9379 1.8064 24 6 0.3841 -2.5787 -1.2307 25 6 -0.9145 -2.2352 -1.3014 26 6 -1.3279 -2.4683 -2.6333 27 6 -0.2573 -2.9408 -3.2966 28 8 0.7785 -2.9991 -2.4437 29 1 -0.4850 0.8401 0.0004 30 1 1.7364 -6.9301 2.2623 31 1 2.9786 -5.7598 2.7680 32 1 5.3331 -6.3507 2.7258 33 1 6.9938 -8.1649 2.8446 34 1 6.3356 -10.4743 2.3001 35 1 4.0193 -10.9678 1.6257 36 1 2.3564 -9.1551 1.5155 37 1 -1.5243 -1.8542 -0.4956 38 1 -2.3142 -2.3001 -3.0399 39 1 -0.2331 -3.2201 -4.3395 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345546827.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:45 Heat of formation + Delta-G solvation = -111.158453 kcal Electronic energy + Delta-G solvation = -25960.144345 eV Core-core repulsion = 21941.392371 eV Total energy + Delta-G solvation = -4018.751974 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.12862 -43.21271 -41.38614 -40.09114 -37.79963 -35.37833 -34.80360 -33.55604 -31.80228 -31.74381 -30.48554 -28.63849 -26.47051 -24.78829 -23.44429 -22.64146 -22.28905 -21.76533 -21.19156 -19.47080 -18.88010 -18.50214 -17.91420 -17.50655 -17.30622 -16.96130 -16.68097 -16.35941 -16.13973 -15.87397 -15.78811 -15.18967 -14.77126 -14.27842 -14.15164 -14.03276 -13.81479 -13.65553 -13.52447 -13.50927 -13.21867 -13.04263 -13.02901 -12.84187 -12.43543 -12.24110 -12.13736 -12.00438 -11.83782 -11.46796 -11.39013 -10.84159 -10.53464 -9.79109 -9.66540 -9.14548 -8.25426 -6.55656 0.37147 0.53226 0.88524 1.05544 1.38770 1.41389 1.51376 1.61611 2.04901 2.34397 2.38459 2.84439 2.98896 3.27853 3.51460 3.56221 3.75127 3.89798 4.09852 4.17144 4.19934 4.34170 4.38133 4.49074 4.53340 4.58526 4.63957 4.76461 4.82157 5.11393 5.12427 5.20146 5.25431 5.36448 5.43763 5.59012 5.61568 5.65175 5.69418 5.74392 5.89371 6.13519 6.43157 6.46067 6.72668 7.15811 8.70590 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.016870 B = 0.003427 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.310891 B = 8169.310207 C = 9262.657876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.025 3.975 3 Si 0.983 3.017 4 H -0.260 1.260 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.556 4.556 8 H 0.078 0.922 9 C 0.300 3.700 10 H 0.048 0.952 11 O -0.348 6.348 12 C 0.429 3.571 13 O -0.522 6.522 14 C 0.126 3.874 15 H 0.139 0.861 16 F -0.190 7.190 17 C -0.091 4.091 18 C -0.101 4.101 19 C -0.121 4.121 20 C -0.125 4.125 21 C -0.122 4.122 22 C -0.127 4.127 23 C -0.120 4.120 24 C -0.016 4.016 25 C -0.186 4.186 26 C -0.230 4.230 27 C -0.070 4.070 28 O -0.197 6.197 29 H 0.271 0.729 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.138 0.862 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.141 0.859 36 H 0.121 0.879 37 H 0.128 0.872 38 H 0.166 0.834 39 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.926 -14.663 2.035 17.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.179 4.179 3 Si 0.805 3.195 4 H -0.184 1.184 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.592 4.592 8 H 0.096 0.904 9 C 0.247 3.753 10 H 0.066 0.934 11 O -0.263 6.263 12 C 0.270 3.730 13 O -0.411 6.411 14 C 0.089 3.911 15 H 0.156 0.844 16 F -0.171 7.171 17 C -0.129 4.129 18 C -0.101 4.101 19 C -0.139 4.139 20 C -0.143 4.143 21 C -0.140 4.140 22 C -0.145 4.145 23 C -0.138 4.138 24 C -0.066 4.066 25 C -0.206 4.206 26 C -0.249 4.249 27 C -0.136 4.136 28 O -0.094 6.094 29 H 0.081 0.919 30 H 0.108 0.892 31 H 0.127 0.873 32 H 0.156 0.844 33 H 0.163 0.837 34 H 0.164 0.836 35 H 0.159 0.841 36 H 0.139 0.861 37 H 0.146 0.854 38 H 0.184 0.816 39 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 8.692 -14.640 2.096 17.154 hybrid contribution -0.746 1.196 -0.118 1.415 sum 7.946 -13.443 1.978 15.741 Atomic orbital electron populations 1.70165 1.07239 1.28493 1.46522 1.25836 0.96054 1.02811 0.93169 0.85135 0.78979 0.77334 0.78008 1.18423 1.20462 1.19503 1.21183 0.94302 0.88425 1.55327 0.90411 1.18906 0.85575 0.82412 0.88437 0.93434 1.86556 1.48195 1.22340 1.69253 1.24819 0.87444 0.85882 0.74829 1.90619 1.23610 1.83411 1.43492 1.21315 0.97817 0.81297 0.90699 0.84358 1.92877 1.91800 1.64025 1.68371 1.21035 1.00757 0.98272 0.92832 1.19604 0.94618 0.93925 1.01937 1.21365 0.92283 1.00786 0.99418 1.21476 1.00339 0.92838 0.99637 1.21545 0.96547 0.97509 0.98402 1.21431 0.93661 0.99747 0.99692 1.21275 1.00453 0.92710 0.99400 1.23402 0.94926 1.02419 0.85893 1.21372 0.94955 1.05752 0.98516 1.22088 1.01423 1.07317 0.94041 1.24693 0.85098 1.06651 0.97187 1.83961 1.38963 1.67415 1.19073 0.91939 0.89206 0.87281 0.84449 0.83655 0.83627 0.84142 0.86093 0.85372 0.81612 0.74430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.43 10.48 21.45 0.22 -49.21 16 2 C 0.02 1.33 5.30 84.66 0.45 1.78 16 3 Si 0.98 42.10 29.54 68.60 2.03 44.13 16 4 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 7 C -0.56 -30.93 8.89 25.60 0.23 -30.70 16 8 H 0.08 4.21 7.81 -2.91 -0.02 4.19 16 9 C 0.30 16.42 2.41 29.10 0.07 16.49 16 10 H 0.05 2.84 7.16 -2.39 -0.02 2.82 16 11 O -0.35 -16.79 9.84 -48.82 -0.48 -17.27 16 12 C 0.43 18.09 7.26 71.23 0.52 18.60 16 13 O -0.52 -24.92 15.82 21.98 0.35 -24.57 16 14 C 0.13 3.88 3.82 29.85 0.11 4.00 16 15 H 0.14 3.57 8.14 -2.39 -0.02 3.55 16 16 F -0.19 -6.32 16.75 44.97 0.75 -5.56 16 17 C -0.09 -2.33 4.82 29.85 0.14 -2.19 16 18 C -0.10 -2.26 5.00 -19.86 -0.10 -2.35 16 19 C -0.12 -2.30 9.70 22.27 0.22 -2.09 16 20 C -0.13 -2.01 10.05 22.27 0.22 -1.79 16 21 C -0.12 -1.88 10.05 22.27 0.22 -1.66 16 22 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 23 C -0.12 -2.59 9.55 22.27 0.21 -2.38 16 24 C -0.02 -0.86 5.67 24.83 0.14 -0.72 16 25 C -0.19 -9.54 9.04 22.19 0.20 -9.34 16 26 C -0.23 -9.62 10.91 22.19 0.24 -9.38 16 27 C -0.07 -2.77 12.09 66.97 0.81 -1.96 16 28 O -0.20 -9.74 10.63 0.92 0.01 -9.73 16 29 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 30 H 0.09 2.43 7.99 -2.38 -0.02 2.41 16 31 H 0.11 2.52 8.09 -2.39 -0.02 2.50 16 32 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 33 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 34 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16 35 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 36 H 0.12 2.57 8.06 -2.91 -0.02 2.55 16 37 H 0.13 6.90 7.49 -2.91 -0.02 6.88 16 38 H 0.17 5.62 8.06 -2.91 -0.02 5.60 16 39 H 0.24 6.46 8.06 -2.91 -0.02 6.43 16 Total: -1.00 -69.98 350.38 7.86 -62.12 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 1.07 Total: 25.78 kcal Atomic # 6 Polarization: -29.60 SS G_CDS: 3.92 Total: -25.69 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 0.22 Total: -49.21 kcal Atomic # 8 Polarization: -51.44 SS G_CDS: -0.12 Total: -51.57 kcal Atomic # 9 Polarization: -6.32 SS G_CDS: 0.75 Total: -5.56 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -69.98 7.86 -62.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345546827.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.040 kcal (2) G-P(sol) polarization free energy of solvation -69.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds