Wall clock time and date at job start Tue Mar 31 2020 12:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48492 * 109.47487 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47233 * 300.00179 * 3 2 1 6 6 H 1.48508 * 109.46883 * 59.99983 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46949 * 179.97438 * 9 7 2 11 11 O 1.45202 * 109.47182 * 60.00383 * 9 7 2 12 12 C 1.34218 * 117.00377 * 89.99319 * 11 9 7 13 13 O 1.20826 * 119.99938 * 0.02562 * 12 11 9 14 14 C 1.50699 * 120.00192 * 179.97438 * 12 11 9 15 15 H 1.09001 * 109.46920 * 345.00233 * 14 12 11 16 16 F 1.39897 * 109.47207 * 105.00122 * 14 12 11 17 17 C 1.53007 * 109.47445 * 225.00367 * 14 12 11 18 18 C 1.50695 * 109.47082 * 174.99953 * 17 14 12 19 19 C 1.38239 * 120.00062 * 269.72575 * 18 17 14 20 20 C 1.38232 * 119.99892 * 179.76603 * 19 18 17 21 21 C 1.38234 * 120.00079 * 0.50710 * 20 19 18 22 22 C 1.38234 * 120.00111 * 359.75012 * 21 20 19 23 23 C 1.38234 * 120.00048 * 89.99887 * 18 17 14 24 24 C 1.50698 * 109.47294 * 299.99557 * 9 7 2 25 25 C 1.34506 * 125.79470 * 265.00244 * 24 9 7 26 26 C 1.41380 * 106.84518 * 179.97438 * 25 24 9 27 27 C 1.34518 * 106.83764 * 0.02562 * 26 25 24 28 28 O 1.34305 * 108.42220 * 359.73222 * 27 26 25 29 29 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.46587 * 295.00086 * 17 14 12 31 31 H 1.09007 * 109.46761 * 54.99971 * 17 14 12 32 32 H 1.08003 * 120.00097 * 0.02562 * 19 18 17 33 33 H 1.08006 * 120.00214 * 180.23282 * 20 19 18 34 34 H 1.08004 * 120.00106 * 179.71993 * 21 20 19 35 35 H 1.07996 * 120.00409 * 179.97438 * 22 21 20 36 36 H 1.08002 * 120.00213 * 0.02562 * 23 18 17 37 37 H 1.08002 * 126.57595 * 0.03875 * 25 24 9 38 38 H 1.07998 * 126.58318 * 179.97438 * 26 25 24 39 39 H 1.08004 * 125.78607 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 1 1.9593 -3.3277 -0.0024 11 8 0.4167 -2.5753 -1.1877 12 6 0.9638 -3.1246 -2.2833 13 8 2.1020 -3.5289 -2.2524 14 6 0.1581 -3.2381 -3.5518 15 1 -0.8967 -3.0789 -3.3277 16 9 0.5911 -2.2730 -4.4673 17 6 0.3469 -4.6324 -4.1530 18 6 -0.5524 -4.7884 -5.3521 19 6 -1.8320 -5.2877 -5.1961 20 6 -2.6586 -5.4263 -6.2954 21 6 -2.2020 -5.0754 -7.5521 22 6 -0.9206 -4.5810 -7.7088 23 6 -0.0958 -4.4375 -6.6088 24 6 0.3842 -2.5798 1.2284 25 6 0.7156 -3.1785 2.3864 26 6 -0.3832 -3.0154 3.2610 27 6 -1.3206 -2.3272 2.5849 28 8 -0.8481 -2.0613 1.3561 29 1 -0.4849 0.8400 0.0004 30 1 1.3854 -4.7585 -4.4588 31 1 0.0933 -5.3867 -3.4080 32 1 -2.1874 -5.5656 -4.2148 33 1 -3.6596 -5.8128 -6.1731 34 1 -2.8463 -5.1879 -8.4116 35 1 -0.5637 -4.3073 -8.6907 36 1 0.9055 -4.0519 -6.7313 37 1 1.6435 -3.6856 2.6063 38 1 -0.4563 -3.3751 4.2767 39 1 -2.2872 -2.0338 2.9671 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345546829.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:51 Heat of formation + Delta-G solvation = -92.530296 kcal Electronic energy + Delta-G solvation = -26143.389679 eV Core-core repulsion = 22125.445482 eV Total energy + Delta-G solvation = -4017.944196 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -47.53897 -41.36408 -39.43512 -39.08721 -35.67510 -33.67280 -33.01131 -31.88335 -30.94282 -30.10993 -29.24247 -26.61603 -25.02880 -23.07902 -22.62419 -21.25870 -20.71096 -19.96722 -19.50775 -17.64956 -16.88495 -16.78772 -16.62559 -16.11722 -15.48615 -15.29261 -15.01193 -14.96629 -14.70469 -14.46752 -14.05141 -13.71107 -13.45887 -13.08633 -12.82330 -12.68653 -12.41942 -12.01790 -11.87391 -11.79899 -11.64582 -11.38898 -11.13607 -11.11004 -11.07159 -10.99324 -10.95716 -10.39712 -9.91406 -9.58969 -9.17431 -8.96944 -8.87868 -8.82406 -8.74954 -7.39367 -6.27534 -4.49807 1.25138 1.35426 2.84465 2.89518 3.17459 3.26505 3.31292 3.37213 3.62310 3.78151 4.20707 4.23660 4.60070 4.74031 4.82723 4.93787 5.03432 5.04596 5.12685 5.13488 5.41234 5.46129 5.52571 5.80989 5.84507 5.84886 5.92783 6.00098 6.04025 6.26044 6.36878 6.39410 6.44542 6.58416 6.75783 6.83433 6.94053 7.14594 7.40882 7.54470 7.62524 7.73946 8.34845 8.48286 8.77964 9.24387 10.71713 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.014790 B = 0.003787 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.671278 B = 7391.396584 C = 8394.505825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.080 3.920 3 Si 0.898 3.102 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.549 4.549 8 H 0.076 0.924 9 C 0.277 3.723 10 H 0.073 0.927 11 O -0.327 6.327 12 C 0.440 3.560 13 O -0.510 6.510 14 C 0.114 3.886 15 H 0.109 0.891 16 F -0.186 7.186 17 C -0.099 4.099 18 C -0.083 4.083 19 C -0.113 4.113 20 C -0.121 4.121 21 C -0.124 4.124 22 C -0.121 4.121 23 C -0.103 4.103 24 C 0.079 3.921 25 C -0.262 4.262 26 C -0.221 4.221 27 C -0.080 4.080 28 O -0.117 6.117 29 H 0.268 0.732 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.947 -9.078 -8.186 13.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.131 4.131 3 Si 0.725 3.275 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.585 4.585 8 H 0.094 0.906 9 C 0.225 3.775 10 H 0.091 0.909 11 O -0.241 6.241 12 C 0.280 3.720 13 O -0.400 6.400 14 C 0.076 3.924 15 H 0.126 0.874 16 F -0.167 7.167 17 C -0.137 4.137 18 C -0.083 4.083 19 C -0.131 4.131 20 C -0.139 4.139 21 C -0.142 4.142 22 C -0.139 4.139 23 C -0.121 4.121 24 C 0.026 3.974 25 C -0.282 4.282 26 C -0.241 4.241 27 C -0.150 4.150 28 O -0.009 6.009 29 H 0.078 0.922 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.143 0.857 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.143 0.857 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -5.943 -8.881 -8.357 13.566 hybrid contribution 0.556 1.104 0.409 1.302 sum -5.387 -7.776 -7.949 12.356 Atomic orbital electron populations 1.70043 1.05804 1.27434 1.42469 1.25175 0.95034 0.99943 0.92909 0.86418 0.80502 0.82650 0.77971 1.19185 1.20355 1.20493 1.21301 0.93567 0.89174 1.54435 0.90558 1.18881 0.84753 0.98485 0.75356 0.90899 1.86768 1.47731 1.69316 1.20330 1.23437 0.86556 0.75228 0.86746 1.90571 1.18783 1.46013 1.84633 1.21134 0.99983 0.87269 0.84023 0.87352 1.92875 1.91742 1.65100 1.66951 1.21088 1.01346 0.95081 0.96169 1.19716 0.94773 0.99385 0.94432 1.21129 0.93370 0.99404 0.99167 1.21122 0.99632 1.00442 0.92751 1.21151 0.96082 0.99615 0.97336 1.21144 0.94300 0.99793 0.98692 1.21142 1.00254 0.98697 0.92023 1.22758 0.83852 0.93217 0.97588 1.21158 1.01380 1.11070 0.94546 1.21501 0.95286 1.06695 1.00568 1.23804 1.00430 1.04729 0.86006 1.84418 1.27818 1.58755 1.29879 0.92181 0.88394 0.88588 0.85708 0.86056 0.86280 0.86090 0.85723 0.84879 0.85101 0.79972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.67 10.62 55.43 0.59 -22.08 16 2 C 0.08 2.18 5.24 -17.82 -0.09 2.08 16 3 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.55 -15.05 8.91 -34.44 -0.31 -15.36 16 8 H 0.08 2.09 7.81 -52.49 -0.41 1.68 16 9 C 0.28 7.06 2.58 -29.03 -0.07 6.99 16 10 H 0.07 1.80 7.15 -51.93 -0.37 1.43 16 11 O -0.33 -8.11 9.25 -41.98 -0.39 -8.49 16 12 C 0.44 9.64 7.26 36.00 0.26 9.90 16 13 O -0.51 -12.01 15.82 -18.75 -0.30 -12.30 16 14 C 0.11 1.97 3.82 -27.88 -0.11 1.87 16 15 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 16 F -0.19 -3.54 16.75 2.25 0.04 -3.50 16 17 C -0.10 -1.38 4.82 -27.88 -0.13 -1.51 16 18 C -0.08 -1.05 5.00 -104.63 -0.52 -1.58 16 19 C -0.11 -1.28 9.70 -39.58 -0.38 -1.67 16 20 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 21 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 22 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 23 C -0.10 -1.26 9.55 -39.58 -0.38 -1.64 16 24 C 0.08 1.94 5.59 -35.63 -0.20 1.74 16 25 C -0.26 -5.69 10.81 -39.71 -0.43 -6.12 16 26 C -0.22 -4.28 10.91 -39.70 -0.43 -4.71 16 27 C -0.08 -1.60 12.09 29.42 0.36 -1.25 16 28 O -0.12 -2.85 8.87 2.17 0.02 -2.83 16 29 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.10 1.38 7.99 -51.93 -0.42 0.97 16 31 H 0.10 1.19 8.08 -51.93 -0.42 0.77 16 32 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 33 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 34 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 35 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.13 2.61 8.06 -52.49 -0.42 2.19 16 38 H 0.13 2.08 8.06 -52.49 -0.42 1.66 16 39 H 0.18 2.83 8.06 -52.48 -0.42 2.41 16 LS Contribution 350.55 15.07 5.28 5.28 Total: -1.00 -31.55 350.55 -7.97 -39.52 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -4.56 Total: 4.68 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -3.64 Total: -16.19 kcal Atomic # 7 Polarization: -22.67 SS G_CDS: 0.59 Total: -22.08 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.67 Total: -23.63 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.04 Total: -3.50 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.55 -7.97 -39.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345546829.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.012 kcal (2) G-P(sol) polarization free energy of solvation -31.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds