Wall clock time and date at job start Tue Mar 31 2020 12:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48492 * 109.47487 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47233 * 300.00179 * 3 2 1 6 6 H 1.48508 * 109.46883 * 59.99983 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46949 * 179.97438 * 9 7 2 11 11 O 1.45202 * 109.47182 * 60.00383 * 9 7 2 12 12 C 1.34218 * 117.00377 * 89.99319 * 11 9 7 13 13 O 1.20826 * 119.99938 * 0.02562 * 12 11 9 14 14 C 1.50699 * 120.00192 * 179.97438 * 12 11 9 15 15 H 1.09001 * 109.46920 * 345.00233 * 14 12 11 16 16 F 1.39897 * 109.47207 * 105.00122 * 14 12 11 17 17 C 1.53007 * 109.47445 * 225.00367 * 14 12 11 18 18 C 1.50695 * 109.47082 * 174.99953 * 17 14 12 19 19 C 1.38239 * 120.00062 * 269.72575 * 18 17 14 20 20 C 1.38232 * 119.99892 * 179.76603 * 19 18 17 21 21 C 1.38234 * 120.00079 * 0.50710 * 20 19 18 22 22 C 1.38234 * 120.00111 * 359.75012 * 21 20 19 23 23 C 1.38234 * 120.00048 * 89.99887 * 18 17 14 24 24 C 1.50698 * 109.47294 * 299.99557 * 9 7 2 25 25 C 1.34506 * 125.79470 * 265.00244 * 24 9 7 26 26 C 1.41380 * 106.84518 * 179.97438 * 25 24 9 27 27 C 1.34518 * 106.83764 * 0.02562 * 26 25 24 28 28 O 1.34305 * 108.42220 * 359.73222 * 27 26 25 29 29 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.46587 * 295.00086 * 17 14 12 31 31 H 1.09007 * 109.46761 * 54.99971 * 17 14 12 32 32 H 1.08003 * 120.00097 * 0.02562 * 19 18 17 33 33 H 1.08006 * 120.00214 * 180.23282 * 20 19 18 34 34 H 1.08004 * 120.00106 * 179.71993 * 21 20 19 35 35 H 1.07996 * 120.00409 * 179.97438 * 22 21 20 36 36 H 1.08002 * 120.00213 * 0.02562 * 23 18 17 37 37 H 1.08002 * 126.57595 * 0.03875 * 25 24 9 38 38 H 1.07998 * 126.58318 * 179.97438 * 26 25 24 39 39 H 1.08004 * 125.78607 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 1 1.9593 -3.3277 -0.0024 11 8 0.4167 -2.5753 -1.1877 12 6 0.9638 -3.1246 -2.2833 13 8 2.1020 -3.5289 -2.2524 14 6 0.1581 -3.2381 -3.5518 15 1 -0.8967 -3.0789 -3.3277 16 9 0.5911 -2.2730 -4.4673 17 6 0.3469 -4.6324 -4.1530 18 6 -0.5524 -4.7884 -5.3521 19 6 -1.8320 -5.2877 -5.1961 20 6 -2.6586 -5.4263 -6.2954 21 6 -2.2020 -5.0754 -7.5521 22 6 -0.9206 -4.5810 -7.7088 23 6 -0.0958 -4.4375 -6.6088 24 6 0.3842 -2.5798 1.2284 25 6 0.7156 -3.1785 2.3864 26 6 -0.3832 -3.0154 3.2610 27 6 -1.3206 -2.3272 2.5849 28 8 -0.8481 -2.0613 1.3561 29 1 -0.4849 0.8400 0.0004 30 1 1.3854 -4.7585 -4.4588 31 1 0.0933 -5.3867 -3.4080 32 1 -2.1874 -5.5656 -4.2148 33 1 -3.6596 -5.8128 -6.1731 34 1 -2.8463 -5.1879 -8.4116 35 1 -0.5637 -4.3073 -8.6907 36 1 0.9055 -4.0519 -6.7313 37 1 1.6435 -3.6856 2.6063 38 1 -0.4563 -3.3751 4.2767 39 1 -2.2872 -2.0338 2.9671 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345546829.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:50 Heat of formation + Delta-G solvation = -107.540060 kcal Electronic energy + Delta-G solvation = -26144.040551 eV Core-core repulsion = 22125.445482 eV Total energy + Delta-G solvation = -4018.595069 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.04875 -43.05304 -41.11446 -40.08140 -37.53112 -35.03852 -34.73824 -33.57642 -31.84370 -31.75411 -30.46573 -28.42869 -26.42704 -24.83219 -23.44855 -22.54501 -22.11516 -21.54052 -21.23778 -19.36829 -18.64840 -18.43618 -17.78371 -17.47305 -17.07383 -16.94731 -16.62969 -16.26002 -15.94572 -15.79294 -15.73386 -15.34863 -14.64074 -14.27338 -14.14631 -13.95456 -13.69948 -13.56044 -13.45194 -13.36246 -13.09438 -13.03016 -13.01102 -12.86660 -12.38148 -12.25623 -11.99832 -11.91399 -11.84152 -11.34538 -11.07964 -10.83773 -10.49844 -9.79678 -9.66141 -9.09381 -8.27860 -6.58508 0.38026 0.52640 1.11715 1.16305 1.34046 1.36758 1.47005 1.77598 2.00685 2.30030 2.57823 2.85264 3.01452 3.36428 3.61617 3.65910 3.78556 3.93526 4.11117 4.19136 4.30477 4.33394 4.38412 4.43786 4.52523 4.60284 4.63484 4.77059 4.82710 5.11530 5.13007 5.19490 5.22078 5.41396 5.51885 5.58332 5.64174 5.69579 5.72186 5.76496 5.91127 6.13247 6.44767 6.66675 6.91283 7.19252 8.70002 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.014790 B = 0.003787 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.671278 B = 7391.396584 C = 8394.505825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.042 3.958 3 Si 0.955 3.045 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.269 1.269 7 C -0.579 4.579 8 H 0.062 0.938 9 C 0.276 3.724 10 H 0.064 0.936 11 O -0.341 6.341 12 C 0.432 3.568 13 O -0.532 6.532 14 C 0.121 3.879 15 H 0.124 0.876 16 F -0.196 7.196 17 C -0.088 4.088 18 C -0.101 4.101 19 C -0.122 4.122 20 C -0.125 4.125 21 C -0.123 4.123 22 C -0.128 4.128 23 C -0.122 4.122 24 C 0.039 3.961 25 C -0.261 4.261 26 C -0.219 4.219 27 C -0.080 4.080 28 O -0.146 6.146 29 H 0.270 0.730 30 H 0.090 0.910 31 H 0.109 0.891 32 H 0.137 0.863 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.141 0.859 36 H 0.120 0.880 37 H 0.146 0.854 38 H 0.171 0.829 39 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.695 -9.424 -8.215 14.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.166 4.166 3 Si 0.778 3.222 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.195 1.195 7 C -0.614 4.614 8 H 0.080 0.920 9 C 0.224 3.776 10 H 0.082 0.918 11 O -0.256 6.256 12 C 0.274 3.726 13 O -0.423 6.423 14 C 0.084 3.916 15 H 0.142 0.858 16 F -0.176 7.176 17 C -0.125 4.125 18 C -0.101 4.101 19 C -0.140 4.140 20 C -0.143 4.143 21 C -0.141 4.141 22 C -0.145 4.145 23 C -0.140 4.140 24 C -0.014 4.014 25 C -0.280 4.280 26 C -0.238 4.238 27 C -0.148 4.148 28 O -0.039 6.039 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.127 0.873 32 H 0.154 0.846 33 H 0.164 0.836 34 H 0.165 0.835 35 H 0.159 0.841 36 H 0.138 0.862 37 H 0.164 0.836 38 H 0.188 0.812 39 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -7.691 -9.239 -8.391 14.660 hybrid contribution 1.048 1.118 0.416 1.588 sum -6.643 -8.121 -7.974 13.179 Atomic orbital electron populations 1.70140 1.06632 1.28011 1.42918 1.25803 0.95858 1.02489 0.92500 0.85562 0.79193 0.79114 0.78284 1.19315 1.19958 1.19451 1.21457 0.93212 0.90825 1.55944 0.91981 1.18742 0.85368 0.97341 0.76182 0.91778 1.86740 1.47821 1.69970 1.21044 1.24380 0.86743 0.74105 0.87369 1.90542 1.19974 1.46799 1.85013 1.21318 0.99576 0.89010 0.81735 0.85811 1.92851 1.91904 1.65876 1.66998 1.21004 1.01518 0.92879 0.97094 1.19646 0.95351 1.01230 0.93872 1.21354 0.92972 0.99234 1.00392 1.21478 1.00557 0.99785 0.92445 1.21544 0.96010 0.98213 0.98284 1.21433 0.94559 0.99466 0.99078 1.21279 1.00631 0.99426 0.92641 1.22634 0.84790 0.95952 0.97991 1.21546 1.02490 1.09809 0.94140 1.21910 0.93843 1.06108 1.01906 1.24731 1.01987 1.03647 0.84458 1.84354 1.27924 1.59516 1.32132 0.92085 0.89160 0.87263 0.84559 0.83568 0.83523 0.84118 0.86193 0.83592 0.81199 0.75858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -47.01 10.62 21.45 0.23 -46.78 16 2 C 0.04 2.33 5.24 84.66 0.44 2.77 16 3 Si 0.95 43.46 29.54 68.60 2.03 45.49 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.58 -32.84 8.91 25.60 0.23 -32.61 16 8 H 0.06 3.56 7.81 -2.91 -0.02 3.53 16 9 C 0.28 14.62 2.58 29.10 0.07 14.69 16 10 H 0.06 3.36 7.15 -2.39 -0.02 3.34 16 11 O -0.34 -17.53 9.25 -48.67 -0.45 -17.98 16 12 C 0.43 19.62 7.26 71.24 0.52 20.14 16 13 O -0.53 -26.15 15.82 21.96 0.35 -25.80 16 14 C 0.12 4.28 3.82 29.85 0.11 4.39 16 15 H 0.12 3.97 8.14 -2.39 -0.02 3.95 16 16 F -0.20 -7.60 16.75 44.97 0.75 -6.85 16 17 C -0.09 -2.45 4.82 29.85 0.14 -2.30 16 18 C -0.10 -2.51 5.00 -19.87 -0.10 -2.61 16 19 C -0.12 -2.59 9.70 22.27 0.22 -2.37 16 20 C -0.12 -2.24 10.05 22.27 0.22 -2.01 16 21 C -0.12 -2.11 10.05 22.27 0.22 -1.88 16 22 C -0.13 -2.49 10.05 22.27 0.22 -2.27 16 23 C -0.12 -2.92 9.55 22.27 0.21 -2.70 16 24 C 0.04 1.93 5.59 24.83 0.14 2.07 16 25 C -0.26 -11.15 10.81 22.19 0.24 -10.91 16 26 C -0.22 -7.92 10.91 22.19 0.24 -7.68 16 27 C -0.08 -3.02 12.09 66.97 0.81 -2.21 16 28 O -0.15 -7.11 8.87 0.80 0.01 -7.10 16 29 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 30 H 0.09 2.63 7.99 -2.39 -0.02 2.61 16 31 H 0.11 2.70 8.08 -2.38 -0.02 2.68 16 32 H 0.14 2.48 8.06 -2.91 -0.02 2.45 16 33 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 34 H 0.15 1.67 8.06 -2.91 -0.02 1.64 16 35 H 0.14 2.09 8.06 -2.91 -0.02 2.06 16 36 H 0.12 2.86 8.06 -2.91 -0.02 2.84 16 37 H 0.15 5.67 8.06 -2.91 -0.02 5.64 16 38 H 0.17 4.70 8.06 -2.91 -0.02 4.68 16 39 H 0.23 6.17 8.06 -2.91 -0.02 6.14 16 Total: -1.00 -69.65 350.55 7.93 -61.72 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 1.07 Total: 22.79 kcal Atomic # 6 Polarization: -29.45 SS G_CDS: 3.95 Total: -25.49 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: 0.23 Total: -46.78 kcal Atomic # 8 Polarization: -50.79 SS G_CDS: -0.10 Total: -50.88 kcal Atomic # 9 Polarization: -7.60 SS G_CDS: 0.75 Total: -6.85 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -69.65 7.93 -61.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345546829.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.816 kcal (2) G-P(sol) polarization free energy of solvation -69.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds