Wall clock time and date at job start Tue Mar 31 2020 12:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.45112 * 2 1 4 4 C 1.53222 * 109.44408 * 240.04674 * 2 1 3 5 5 C 1.53546 * 108.83951 * 172.67097 * 4 2 1 6 6 H 1.08992 * 109.80685 * 286.78131 * 5 4 2 7 7 C 1.53002 * 109.79762 * 165.97424 * 5 4 2 8 8 F 1.39894 * 109.47064 * 60.00405 * 7 5 4 9 9 F 1.39903 * 109.47001 * 180.02562 * 7 5 4 10 10 F 1.39896 * 109.47219 * 300.00353 * 7 5 4 11 11 N 1.46878 * 107.76652 * 46.41404 * 5 4 2 12 12 N 1.39481 * 127.33799 * 164.80478 * 11 5 4 13 13 C 1.30462 * 109.15630 * 179.68077 * 12 11 5 14 14 C 1.41648 * 108.23295 * 0.45993 * 13 12 11 15 15 C 1.46704 * 126.56218 * 179.81435 * 14 13 12 16 16 O 1.21713 * 120.00063 * 179.68805 * 15 14 13 17 17 N 1.34777 * 119.99851 * 359.41648 * 15 14 13 18 18 C 1.37003 * 119.99946 * 180.27339 * 17 15 14 19 19 H 1.08002 * 120.00338 * 0.02562 * 18 17 15 20 20 C 1.38942 * 120.00034 * 179.97438 * 18 17 15 21 21 N 1.31444 * 120.00027 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00057 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47034 * 59.99921 * 22 20 18 24 24 H 1.48504 * 109.47036 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46993 * 299.99993 * 22 20 18 26 26 C 1.35141 * 124.08673 * 344.79108 * 11 5 4 27 27 N 1.37870 * 125.25376 * 0.02964 * 26 11 5 28 28 H 1.09004 * 109.47541 * 300.02997 * 1 2 3 29 29 H 1.09001 * 109.47566 * 60.03580 * 1 2 3 30 30 H 1.09003 * 109.47028 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.57465 * 292.48440 * 4 2 1 32 32 H 1.09001 * 109.57332 * 52.87012 * 4 2 1 33 33 H 1.08001 * 125.88182 * 180.26913 * 13 12 11 34 34 H 0.97000 * 119.99736 * 0.26884 * 17 15 14 35 35 H 0.96991 * 119.99844 * 179.97438 * 21 20 18 36 36 H 1.00896 * 110.99609 * 105.65495 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0400 -0.7214 -1.2519 5 6 3.5642 -0.5547 -1.3338 6 1 3.8088 0.4666 -1.6256 7 6 4.1388 -1.5374 -2.3561 8 9 3.5777 -1.2845 -3.6124 9 9 5.5272 -1.3801 -2.4248 10 9 3.8370 -2.8463 -1.9654 11 7 4.1184 -0.8397 -0.0038 12 7 5.4506 -1.0958 0.3205 13 6 5.5475 -1.2959 1.6060 14 6 4.2532 -1.1846 2.1706 15 6 3.9009 -1.3405 3.5862 16 8 2.7442 -1.2134 3.9430 17 7 4.8572 -1.6298 4.4907 18 6 4.5274 -1.7809 5.8118 19 1 3.5009 -1.6686 6.1284 20 6 5.5132 -2.0797 6.7442 21 7 6.7622 -2.2180 6.3587 22 14 5.0633 -2.2864 8.5454 23 1 4.0869 -3.3962 8.6875 24 1 6.2860 -2.5988 9.3283 25 1 4.4597 -1.0280 9.0524 26 6 3.3818 -0.8937 1.1280 27 7 2.0198 -0.6926 1.2014 28 1 -0.3634 0.5143 0.8897 29 1 -0.3634 0.5133 -0.8903 30 1 -0.3633 -1.0277 0.0005 31 1 1.7912 -1.7808 -1.1897 32 1 1.5770 -0.2869 -2.1378 33 1 6.4573 -1.5124 2.1461 34 1 5.7790 -1.7312 4.2062 35 1 7.4504 -2.4262 7.0097 36 1 1.5325 -1.5652 1.3397 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346385660.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:55 Heat of formation + Delta-G solvation = -127.640262 kcal Electronic energy + Delta-G solvation = -27459.273715 eV Core-core repulsion = 22950.163008 eV Total energy + Delta-G solvation = -4509.110706 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -51.31148 -48.83477 -48.75744 -42.88258 -39.72744 -38.83580 -35.91286 -35.30981 -33.29156 -32.80705 -30.65210 -29.18636 -27.53613 -26.88268 -24.28331 -23.32469 -23.05063 -21.22583 -20.73130 -19.89228 -19.76770 -19.58473 -19.07285 -18.01774 -17.35719 -16.84911 -16.56441 -16.31649 -16.04229 -15.71334 -15.57848 -15.52752 -15.20944 -15.16944 -14.95488 -14.89912 -14.80356 -14.67676 -14.40765 -13.96828 -13.56353 -13.41113 -13.15259 -12.89088 -12.85763 -12.40893 -12.37729 -12.34544 -12.09654 -12.01612 -11.44370 -11.08726 -10.30587 -10.21022 -9.93408 -9.22379 -8.40110 -5.84869 0.35667 0.84643 1.14689 1.41206 1.45980 1.51721 1.57372 2.35417 2.40160 2.49568 2.58867 2.64353 2.92691 3.24931 3.39031 3.42685 3.48765 3.64616 3.83301 3.91351 4.04917 4.21719 4.28928 4.41462 4.57899 4.72158 4.88996 4.98444 5.15565 5.33862 5.35978 5.48466 5.82634 6.06029 6.12328 6.44571 6.69220 7.19455 7.65624 8.21807 8.77941 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.021183 B = 0.003697 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.500998 B = 7571.835531 C = 8598.639288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.074 3.926 3 H 0.101 0.899 4 C -0.162 4.162 5 C 0.118 3.882 6 H 0.161 0.839 7 C 0.457 3.543 8 F -0.162 7.162 9 F -0.175 7.175 10 F -0.186 7.186 11 N -0.397 5.397 12 N -0.300 5.300 13 C 0.095 3.905 14 C -0.292 4.292 15 C 0.520 3.480 16 O -0.622 6.622 17 N -0.567 5.567 18 C -0.327 4.327 19 H 0.083 0.917 20 C -0.015 4.015 21 N -0.921 5.921 22 Si 0.994 3.006 23 H -0.271 1.271 24 H -0.272 1.272 25 H -0.271 1.271 26 C 0.335 3.665 27 N -0.587 5.587 28 H 0.062 0.938 29 H 0.103 0.897 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.159 0.841 33 H 0.204 0.796 34 H 0.394 0.606 35 H 0.277 0.723 36 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.627 4.009 -20.829 22.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.033 4.033 3 H 0.119 0.881 4 C -0.201 4.201 5 C 0.014 3.986 6 H 0.178 0.822 7 C 0.402 3.598 8 F -0.144 7.144 9 F -0.156 7.156 10 F -0.168 7.168 11 N -0.186 5.186 12 N -0.119 5.119 13 C -0.094 4.094 14 C -0.309 4.309 15 C 0.309 3.691 16 O -0.510 6.510 17 N -0.203 5.203 18 C -0.457 4.457 19 H 0.101 0.899 20 C -0.214 4.214 21 N -0.562 5.562 22 Si 0.818 3.182 23 H -0.196 1.196 24 H -0.197 1.197 25 H -0.197 1.197 26 C 0.109 3.891 27 N -0.222 5.222 28 H 0.081 0.919 29 H 0.121 0.879 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.176 0.824 33 H 0.220 0.780 34 H 0.228 0.772 35 H 0.086 0.914 36 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -8.635 4.643 -21.334 23.479 hybrid contribution 0.547 -1.108 0.975 1.574 sum -8.088 3.535 -20.360 22.191 Atomic orbital electron populations 1.21832 0.89788 1.03753 1.04400 1.22082 0.98913 0.98381 0.83970 0.88140 1.23000 0.88144 1.04785 1.04217 1.23103 0.97001 1.00587 0.77863 0.82213 1.20384 0.76740 0.80908 0.81791 1.93230 1.84773 1.93883 1.42482 1.93260 1.30669 1.95336 1.96357 1.93198 1.92881 1.39847 1.90876 1.48790 1.06205 1.58155 1.05444 1.77031 0.94400 1.24923 1.15522 1.24310 0.98005 0.96085 0.90971 1.19812 0.93540 1.23924 0.93577 1.17124 0.85267 0.82178 0.84516 1.90577 1.20406 1.58536 1.81466 1.41676 1.09581 1.62296 1.06762 1.19664 0.95689 1.46596 0.83701 0.89921 1.26048 0.94565 0.96498 1.04311 1.69686 1.00918 1.48500 1.37110 0.84971 0.77707 0.78871 0.76664 1.19612 1.19679 1.19668 1.19406 0.89504 0.94720 0.85478 1.57380 0.97811 1.28211 1.38835 0.91856 0.87850 0.91418 0.89172 0.82358 0.77978 0.77170 0.91370 0.79237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.35 71.98 0.67 -0.88 16 2 C 0.07 1.20 3.10 44.96 0.14 1.34 16 3 H 0.10 1.61 8.13 -2.39 -0.02 1.59 16 4 C -0.16 -1.96 4.54 30.85 0.14 -1.82 16 5 C 0.12 2.16 3.23 45.10 0.15 2.31 16 6 H 0.16 2.07 8.14 -2.39 -0.02 2.05 16 7 C 0.46 9.36 2.77 71.98 0.20 9.56 16 8 F -0.16 -2.60 17.05 44.97 0.77 -1.83 16 9 F -0.17 -4.44 16.33 44.97 0.73 -3.71 16 10 F -0.19 -4.61 16.53 44.97 0.74 -3.86 16 11 N -0.40 -11.38 3.67 -321.91 -1.18 -12.56 16 12 N -0.30 -10.07 11.40 -56.02 -0.64 -10.71 16 13 C 0.09 3.45 11.50 85.74 0.99 4.44 16 14 C -0.29 -12.04 6.15 -20.05 -0.12 -12.16 16 15 C 0.52 26.62 7.74 86.45 0.67 27.29 16 16 O -0.62 -35.11 15.95 -4.39 -0.07 -35.18 16 17 N -0.57 -30.51 5.27 -310.57 -1.64 -32.15 16 18 C -0.33 -18.92 9.68 84.05 0.81 -18.10 16 19 H 0.08 5.02 7.15 -2.91 -0.02 5.00 16 20 C -0.01 -0.80 5.50 84.92 0.47 -0.33 16 21 N -0.92 -50.60 13.05 21.66 0.28 -50.32 16 22 Si 0.99 43.41 29.55 68.60 2.03 45.44 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 24 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 26 C 0.33 11.22 7.07 132.56 0.94 12.16 16 27 N -0.59 -16.48 5.90 -322.04 -1.90 -18.38 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.09 1.22 7.50 -2.39 -0.02 1.20 16 32 H 0.16 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.20 6.71 7.50 -2.91 -0.02 6.69 16 34 H 0.39 20.22 6.84 -92.71 -0.63 19.59 16 35 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 36 H 0.38 10.33 8.62 -89.70 -0.77 9.55 16 Total: -1.00 -73.99 321.42 3.94 -70.05 By element: Atomic # 1 Polarization: 29.66 SS G_CDS: -0.23 Total: 29.43 kcal Atomic # 6 Polarization: 18.74 SS G_CDS: 5.05 Total: 23.79 kcal Atomic # 7 Polarization: -119.05 SS G_CDS: -5.08 Total: -124.13 kcal Atomic # 8 Polarization: -35.11 SS G_CDS: -0.07 Total: -35.18 kcal Atomic # 9 Polarization: -11.65 SS G_CDS: 2.24 Total: -9.40 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -73.99 3.94 -70.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346385660.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.589 kcal (2) G-P(sol) polarization free energy of solvation -73.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds