Wall clock time and date at job start Tue Mar 31 2020 12:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47648 * 2 1 4 4 C 1.50706 * 109.47053 * 119.99859 * 2 1 3 5 5 O 1.20822 * 120.00576 * 119.99709 * 4 2 1 6 6 O 1.34238 * 119.99716 * 300.00182 * 4 2 1 7 7 C 1.45200 * 116.99799 * 179.97438 * 6 4 2 8 8 H 1.09002 * 109.47059 * 30.00271 * 7 6 4 9 9 C 1.50700 * 109.46963 * 149.99631 * 7 6 4 10 10 H 1.07998 * 119.99852 * 0.02562 * 9 7 6 11 11 C 1.37879 * 120.00119 * 179.97438 * 9 7 6 12 12 N 1.31511 * 119.99570 * 0.02562 * 11 9 7 13 13 Si 1.86802 * 120.00023 * 180.02562 * 11 9 7 14 14 H 1.48491 * 109.46980 * 90.00315 * 13 11 9 15 15 H 1.48503 * 109.46774 * 210.00508 * 13 11 9 16 16 H 1.48498 * 109.46964 * 330.00451 * 13 11 9 17 17 C 1.50696 * 109.47394 * 269.99937 * 7 6 4 18 18 C 1.34512 * 125.79261 * 144.99949 * 17 7 6 19 19 C 1.41379 * 106.84086 * 180.02562 * 18 17 7 20 20 C 1.34512 * 106.84332 * 0.02562 * 19 18 17 21 21 O 1.34301 * 108.41872 * 359.97438 * 20 19 18 22 22 C 1.50694 * 109.47584 * 239.99575 * 2 1 3 23 23 C 1.38263 * 119.98989 * 120.00393 * 22 2 1 24 24 C 1.38226 * 120.05400 * 180.02562 * 23 22 2 25 25 C 1.38219 * 120.02568 * 0.02562 * 24 23 22 26 26 C 1.38435 * 119.97192 * 359.97438 * 25 24 23 27 27 F 1.35106 * 120.02495 * 180.02562 * 26 25 24 28 28 C 1.38185 * 119.98669 * 299.73044 * 22 2 1 29 29 H 1.08999 * 109.47144 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47280 * 300.00254 * 1 2 3 31 31 H 1.09003 * 109.46729 * 60.00387 * 1 2 3 32 32 H 0.97003 * 119.99617 * 179.97438 * 12 11 9 33 33 H 1.07996 * 126.57559 * 359.97438 * 18 17 7 34 34 H 1.08007 * 126.57604 * 180.02562 * 19 18 17 35 35 H 1.08004 * 125.79431 * 180.02562 * 20 19 18 36 36 H 1.08000 * 119.97109 * 0.02562 * 23 22 2 37 37 H 1.08002 * 119.98616 * 180.02562 * 24 23 22 38 38 H 1.07996 * 120.01087 * 180.02562 * 25 24 23 39 39 H 1.07992 * 120.00952 * 359.97438 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7269 -1.6928 1.1198 6 8 1.7080 -0.2517 2.4497 7 6 2.2266 -0.9862 3.5898 8 1 3.1794 -1.4441 3.3240 9 6 2.4287 -0.0414 4.7463 10 1 2.1907 1.0062 4.6356 11 6 2.9165 -0.5145 5.9460 12 7 3.2058 -1.7903 6.0808 13 14 3.1663 0.6566 7.3797 14 1 1.9249 0.7160 8.1923 15 1 4.2881 0.1730 8.2241 16 1 3.4846 2.0116 6.8623 17 6 1.2457 -2.0602 3.9840 18 6 1.5616 -3.2764 4.4639 19 6 0.3428 -3.9537 4.6977 20 6 -0.6450 -3.1110 4.3462 21 8 -0.0922 -1.9656 3.9149 22 6 2.0324 -0.7105 -1.2303 23 6 2.8274 -0.0384 -2.1403 24 6 3.2886 -0.6886 -3.2695 25 6 2.9549 -2.0116 -3.4906 26 6 2.1590 -2.6855 -2.5802 27 9 1.8326 -3.9789 -2.7950 28 6 1.7031 -2.0351 -1.4458 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 3.5493 -2.1231 6.9247 33 1 2.5555 -3.6619 4.6366 34 1 0.2271 -4.9555 5.0845 35 1 -1.7032 -3.3198 4.4022 36 1 3.0883 0.9955 -1.9685 37 1 3.9098 -0.1627 -3.9793 38 1 3.3157 -2.5195 -4.3727 39 1 1.0862 -2.5612 -0.7325 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346719679.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:49 Heat of formation + Delta-G solvation = -93.464407 kcal Electronic energy + Delta-G solvation = -26476.029347 eV Core-core repulsion = 22458.044645 eV Total energy + Delta-G solvation = -4017.984703 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.83655 -41.36408 -40.17615 -38.74173 -35.84269 -34.17593 -33.29205 -31.69876 -30.59477 -29.89580 -29.31323 -26.69982 -24.97368 -23.40471 -22.69821 -22.02617 -20.61247 -20.02121 -19.20863 -17.45349 -17.25179 -16.73591 -16.59767 -16.21404 -15.95655 -15.55230 -15.27243 -15.11498 -14.80337 -14.49357 -13.94505 -13.91661 -13.48282 -13.17531 -12.87253 -12.58186 -12.13779 -12.07774 -12.02916 -11.84050 -11.75070 -11.59434 -11.31976 -11.18871 -11.14111 -10.99855 -10.94119 -10.39681 -10.11612 -9.66418 -9.44884 -8.96962 -8.85178 -8.69618 -8.65543 -7.26119 -6.23270 -4.42898 1.09206 1.20632 2.84304 2.86249 3.19900 3.23266 3.26971 3.35733 3.71098 3.95257 4.16735 4.18957 4.25659 4.49949 4.70223 4.95801 5.03711 5.08040 5.18151 5.20787 5.36490 5.42665 5.74904 5.77688 5.84582 5.88894 6.01103 6.06404 6.10056 6.20918 6.23057 6.37781 6.46340 6.69087 6.86256 6.98298 7.15498 7.23026 7.36690 7.66840 7.71067 7.82675 8.33571 8.47582 8.74982 9.24307 10.73964 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.016198 B = 0.003963 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.225265 B = 7063.764341 C = 7839.771411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.047 4.047 3 H 0.117 0.883 4 C 0.457 3.543 5 O -0.507 6.507 6 O -0.345 6.345 7 C 0.299 3.701 8 H 0.078 0.922 9 C -0.530 4.530 10 H 0.078 0.922 11 C 0.069 3.931 12 N -0.867 5.867 13 Si 0.914 3.086 14 H -0.277 1.277 15 H -0.283 1.283 16 H -0.269 1.269 17 C 0.021 3.979 18 C -0.175 4.175 19 C -0.218 4.218 20 C -0.090 4.090 21 O -0.179 6.179 22 C -0.040 4.040 23 C -0.120 4.120 24 C -0.095 4.095 25 C -0.156 4.156 26 C 0.096 3.904 27 F -0.141 7.141 28 C -0.116 4.116 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.269 0.731 33 H 0.145 0.855 34 H 0.130 0.870 35 H 0.184 0.816 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.632 2.235 -14.610 15.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.066 4.066 3 H 0.135 0.865 4 C 0.298 3.702 5 O -0.395 6.395 6 O -0.261 6.261 7 C 0.246 3.754 8 H 0.095 0.905 9 C -0.567 4.567 10 H 0.096 0.904 11 C -0.136 4.136 12 N -0.502 5.502 13 Si 0.741 3.259 14 H -0.203 1.203 15 H -0.208 1.208 16 H -0.194 1.194 17 C -0.030 4.030 18 C -0.194 4.194 19 C -0.238 4.238 20 C -0.157 4.157 21 O -0.075 6.075 22 C -0.040 4.040 23 C -0.138 4.138 24 C -0.113 4.113 25 C -0.174 4.174 26 C 0.076 3.924 27 F -0.120 7.120 28 C -0.135 4.135 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.163 0.837 34 H 0.148 0.852 35 H 0.201 0.799 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.504 1.988 -14.555 15.102 hybrid contribution 0.168 -0.311 1.247 1.296 sum -3.336 1.677 -13.308 13.822 Atomic orbital electron populations 1.21774 0.91089 1.03310 1.03565 1.19960 0.98506 1.00277 0.87867 0.86524 1.23202 0.77934 0.83044 0.85988 1.90650 1.35567 1.25816 1.87468 1.86532 1.69213 1.55747 1.14578 1.19192 0.88974 0.86962 0.80259 0.90481 1.20895 1.45629 0.94953 0.95268 0.90395 1.24942 0.94374 0.95681 0.98635 1.70030 1.41057 1.12811 1.26277 0.86227 0.77989 0.80618 0.81109 1.20303 1.20805 1.19361 1.23559 0.79870 0.96622 1.02975 1.21294 0.98626 0.93884 1.05638 1.21720 0.93469 1.00752 1.07838 1.23592 0.98305 0.86009 1.07823 1.83979 1.21010 1.36029 1.66505 1.19231 0.96786 0.93258 0.94762 1.21088 0.97714 1.00553 0.94424 1.20908 0.99251 0.93683 0.97486 1.21110 1.00352 0.95840 1.00131 1.17648 0.99504 0.79020 0.96186 1.91494 1.91151 1.34557 1.94803 1.20971 1.01502 0.94889 0.96145 0.91987 0.90133 0.91219 0.92126 0.83704 0.85187 0.79922 0.85125 0.84993 0.84974 0.84846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.94 37.16 0.33 -1.41 16 2 C -0.05 -0.67 3.01 -92.92 -0.28 -0.95 16 3 H 0.12 1.37 7.88 -51.93 -0.41 0.96 16 4 C 0.46 9.11 7.09 36.01 0.26 9.37 16 5 O -0.51 -11.53 14.31 -18.75 -0.27 -11.80 16 6 O -0.34 -7.87 9.74 -42.08 -0.41 -8.28 16 7 C 0.30 7.80 2.41 -29.04 -0.07 7.73 16 8 H 0.08 2.17 7.16 -51.93 -0.37 1.80 16 9 C -0.53 -14.40 8.89 -34.44 -0.31 -14.70 16 10 H 0.08 2.07 7.81 -52.49 -0.41 1.66 16 11 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 12 N -0.87 -23.70 10.48 55.43 0.58 -23.12 16 13 Si 0.91 20.63 29.54 -169.99 -5.02 15.61 16 14 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 16 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 17 C 0.02 0.53 5.67 -35.63 -0.20 0.33 16 18 C -0.18 -4.37 9.04 -39.70 -0.36 -4.72 16 19 C -0.22 -4.68 10.91 -39.70 -0.43 -5.11 16 20 C -0.09 -1.84 12.09 29.41 0.36 -1.48 16 21 O -0.18 -4.30 10.63 2.02 0.02 -4.28 16 22 C -0.04 -0.55 4.40 -104.63 -0.46 -1.01 16 23 C -0.12 -1.34 9.67 -39.58 -0.38 -1.72 16 24 C -0.10 -0.96 10.04 -39.59 -0.40 -1.36 16 25 C -0.16 -1.76 10.03 -39.52 -0.40 -2.16 16 26 C 0.10 1.33 7.30 -39.42 -0.29 1.05 16 27 F -0.14 -2.08 17.27 2.25 0.04 -2.04 16 28 C -0.12 -1.74 7.91 -39.51 -0.31 -2.05 16 29 H 0.06 0.81 7.40 -51.93 -0.38 0.42 16 30 H 0.08 1.04 8.11 -51.93 -0.42 0.62 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.15 3.74 7.49 -52.49 -0.39 3.35 16 34 H 0.13 2.37 8.06 -52.48 -0.42 1.95 16 35 H 0.18 2.82 8.06 -52.48 -0.42 2.40 16 36 H 0.13 1.14 7.94 -52.49 -0.42 0.72 16 37 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 38 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.13 2.13 7.51 -52.49 -0.39 1.73 16 LS Contribution 345.96 15.07 5.21 5.21 Total: -1.00 -31.30 345.96 -7.33 -38.64 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -4.45 Total: 6.50 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -3.04 Total: -16.45 kcal Atomic # 7 Polarization: -23.70 SS G_CDS: 0.58 Total: -23.12 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.66 Total: -24.36 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.30 -7.33 -38.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346719679.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.827 kcal (2) G-P(sol) polarization free energy of solvation -31.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds