Wall clock time and date at job start Tue Mar 31 2020 12:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47648 * 2 1 4 4 C 1.50706 * 109.47053 * 119.99859 * 2 1 3 5 5 O 1.20822 * 120.00576 * 119.99709 * 4 2 1 6 6 O 1.34238 * 119.99716 * 300.00182 * 4 2 1 7 7 C 1.45200 * 116.99799 * 179.97438 * 6 4 2 8 8 H 1.09002 * 109.47059 * 30.00271 * 7 6 4 9 9 C 1.50700 * 109.46963 * 149.99631 * 7 6 4 10 10 H 1.07998 * 119.99852 * 0.02562 * 9 7 6 11 11 C 1.37879 * 120.00119 * 179.97438 * 9 7 6 12 12 N 1.31511 * 119.99570 * 0.02562 * 11 9 7 13 13 Si 1.86802 * 120.00023 * 180.02562 * 11 9 7 14 14 H 1.48491 * 109.46980 * 90.00315 * 13 11 9 15 15 H 1.48503 * 109.46774 * 210.00508 * 13 11 9 16 16 H 1.48498 * 109.46964 * 330.00451 * 13 11 9 17 17 C 1.50696 * 109.47394 * 269.99937 * 7 6 4 18 18 C 1.34512 * 125.79261 * 144.99949 * 17 7 6 19 19 C 1.41379 * 106.84086 * 180.02562 * 18 17 7 20 20 C 1.34512 * 106.84332 * 0.02562 * 19 18 17 21 21 O 1.34301 * 108.41872 * 359.97438 * 20 19 18 22 22 C 1.50694 * 109.47584 * 239.99575 * 2 1 3 23 23 C 1.38263 * 119.98989 * 120.00393 * 22 2 1 24 24 C 1.38226 * 120.05400 * 180.02562 * 23 22 2 25 25 C 1.38219 * 120.02568 * 0.02562 * 24 23 22 26 26 C 1.38435 * 119.97192 * 359.97438 * 25 24 23 27 27 F 1.35106 * 120.02495 * 180.02562 * 26 25 24 28 28 C 1.38185 * 119.98669 * 299.73044 * 22 2 1 29 29 H 1.08999 * 109.47144 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47280 * 300.00254 * 1 2 3 31 31 H 1.09003 * 109.46729 * 60.00387 * 1 2 3 32 32 H 0.97003 * 119.99617 * 179.97438 * 12 11 9 33 33 H 1.07996 * 126.57559 * 359.97438 * 18 17 7 34 34 H 1.08007 * 126.57604 * 180.02562 * 19 18 17 35 35 H 1.08004 * 125.79431 * 180.02562 * 20 19 18 36 36 H 1.08000 * 119.97109 * 0.02562 * 23 22 2 37 37 H 1.08002 * 119.98616 * 180.02562 * 24 23 22 38 38 H 1.07996 * 120.01087 * 180.02562 * 25 24 23 39 39 H 1.07992 * 120.00952 * 359.97438 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7269 -1.6928 1.1198 6 8 1.7080 -0.2517 2.4497 7 6 2.2266 -0.9862 3.5898 8 1 3.1794 -1.4441 3.3240 9 6 2.4287 -0.0414 4.7463 10 1 2.1907 1.0062 4.6356 11 6 2.9165 -0.5145 5.9460 12 7 3.2058 -1.7903 6.0808 13 14 3.1663 0.6566 7.3797 14 1 1.9249 0.7160 8.1923 15 1 4.2881 0.1730 8.2241 16 1 3.4846 2.0116 6.8623 17 6 1.2457 -2.0602 3.9840 18 6 1.5616 -3.2764 4.4639 19 6 0.3428 -3.9537 4.6977 20 6 -0.6450 -3.1110 4.3462 21 8 -0.0922 -1.9656 3.9149 22 6 2.0324 -0.7105 -1.2303 23 6 2.8274 -0.0384 -2.1403 24 6 3.2886 -0.6886 -3.2695 25 6 2.9549 -2.0116 -3.4906 26 6 2.1590 -2.6855 -2.5802 27 9 1.8326 -3.9789 -2.7950 28 6 1.7031 -2.0351 -1.4458 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 3.5493 -2.1231 6.9247 33 1 2.5555 -3.6619 4.6366 34 1 0.2271 -4.9555 5.0845 35 1 -1.7032 -3.3198 4.4022 36 1 3.0883 0.9955 -1.9685 37 1 3.9098 -0.1627 -3.9793 38 1 3.3157 -2.5195 -4.3727 39 1 1.0862 -2.5612 -0.7325 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346719679.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:49 Heat of formation + Delta-G solvation = -109.570367 kcal Electronic energy + Delta-G solvation = -26476.727754 eV Core-core repulsion = 22458.044645 eV Total energy + Delta-G solvation = -4018.683109 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.92252 -43.19475 -41.63919 -39.94049 -37.56119 -35.48085 -35.13264 -33.54265 -31.66941 -31.50019 -30.48186 -28.60793 -26.25131 -25.04975 -23.78409 -23.32841 -22.38524 -21.60281 -20.88668 -19.05937 -18.69098 -18.34415 -18.17994 -17.35126 -17.14649 -16.99399 -16.72200 -16.64832 -16.46965 -16.26971 -15.17593 -15.08175 -14.70297 -14.63455 -14.31700 -13.88595 -13.71162 -13.57711 -13.48768 -13.29485 -13.05492 -13.00136 -12.92536 -12.85141 -12.79804 -12.33536 -12.21491 -12.07234 -11.88180 -11.39464 -11.24269 -10.82818 -10.52678 -9.94230 -9.67239 -9.12735 -8.23703 -6.54012 0.12333 0.24237 1.08996 1.26089 1.39749 1.42139 1.52717 1.85100 2.08865 2.37095 2.39999 2.68855 3.00862 3.16153 3.48279 3.71325 3.87510 4.05390 4.07083 4.18805 4.25465 4.28834 4.38261 4.44481 4.55423 4.64814 4.76069 4.83217 4.92052 5.09391 5.14130 5.15773 5.20425 5.32604 5.34635 5.40672 5.46308 5.48755 5.66424 5.82261 5.92272 5.95612 6.47145 6.56881 6.90062 7.18348 8.71850 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.016198 B = 0.003963 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.225265 B = 7063.764341 C = 7839.771411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.036 4.036 3 H 0.150 0.850 4 C 0.448 3.552 5 O -0.542 6.542 6 O -0.351 6.351 7 C 0.303 3.697 8 H 0.039 0.961 9 C -0.555 4.555 10 H 0.077 0.923 11 C 0.024 3.976 12 N -0.892 5.892 13 Si 0.981 3.019 14 H -0.274 1.274 15 H -0.276 1.276 16 H -0.258 1.258 17 C -0.007 4.007 18 C -0.193 4.193 19 C -0.230 4.230 20 C -0.070 4.070 21 O -0.193 6.193 22 C -0.057 4.057 23 C -0.114 4.114 24 C -0.085 4.085 25 C -0.150 4.150 26 C 0.069 3.931 27 F -0.154 7.154 28 C -0.140 4.140 29 H 0.045 0.955 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.270 0.730 33 H 0.123 0.877 34 H 0.163 0.837 35 H 0.240 0.760 36 H 0.164 0.836 37 H 0.175 0.825 38 H 0.158 0.842 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.296 4.042 -15.783 16.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.055 4.055 3 H 0.167 0.833 4 C 0.293 3.707 5 O -0.432 6.432 6 O -0.267 6.267 7 C 0.249 3.751 8 H 0.056 0.944 9 C -0.591 4.591 10 H 0.095 0.905 11 C -0.179 4.179 12 N -0.526 5.526 13 Si 0.804 3.196 14 H -0.200 1.200 15 H -0.201 1.201 16 H -0.182 1.182 17 C -0.057 4.057 18 C -0.212 4.212 19 C -0.249 4.249 20 C -0.137 4.137 21 O -0.090 6.090 22 C -0.058 4.058 23 C -0.131 4.131 24 C -0.102 4.102 25 C -0.168 4.168 26 C 0.050 3.950 27 F -0.133 7.133 28 C -0.159 4.159 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.125 0.875 32 H 0.079 0.921 33 H 0.141 0.859 34 H 0.181 0.819 35 H 0.256 0.744 36 H 0.181 0.819 37 H 0.192 0.808 38 H 0.176 0.824 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.174 3.797 -15.751 16.731 hybrid contribution 0.370 -0.954 1.510 1.824 sum -3.805 2.843 -14.241 15.012 Atomic orbital electron populations 1.21783 0.89721 1.02770 1.04969 1.20138 0.99551 1.00977 0.84836 0.83256 1.24498 0.76976 0.82868 0.86394 1.90625 1.37283 1.27595 1.87733 1.86521 1.69348 1.55651 1.15221 1.18731 0.88032 0.87128 0.81210 0.94382 1.21167 1.46597 0.95147 0.96219 0.90471 1.25842 0.93714 0.97315 1.01069 1.70175 1.41246 1.14404 1.26813 0.85203 0.77971 0.78853 0.77561 1.19991 1.20117 1.18233 1.23376 0.80705 0.96953 1.04694 1.21349 0.99188 0.94563 1.06139 1.22057 0.92018 1.02421 1.08432 1.24661 1.00467 0.84046 1.04509 1.83954 1.20209 1.37777 1.67103 1.19289 0.98288 0.92934 0.95260 1.21512 0.95880 1.01969 0.93774 1.21418 0.98312 0.93018 0.97480 1.21492 0.98806 0.96489 1.00013 1.17955 1.01115 0.78914 0.97060 1.91453 1.91487 1.35432 1.94904 1.20912 1.02588 0.95918 0.96513 0.93564 0.90821 0.87542 0.92070 0.85852 0.81904 0.74400 0.81873 0.80786 0.82420 0.87658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.94 71.98 0.64 -2.63 16 2 C -0.04 -1.02 3.01 -12.29 -0.04 -1.05 16 3 H 0.15 3.16 7.88 -2.39 -0.02 3.15 16 4 C 0.45 18.73 7.09 71.24 0.50 19.23 16 5 O -0.54 -26.42 14.31 21.98 0.31 -26.10 16 6 O -0.35 -16.82 9.74 -48.81 -0.48 -17.29 16 7 C 0.30 16.73 2.41 29.10 0.07 16.80 16 8 H 0.04 2.35 7.16 -2.39 -0.02 2.34 16 9 C -0.55 -31.21 8.89 25.60 0.23 -30.99 16 10 H 0.08 4.21 7.81 -2.91 -0.02 4.19 16 11 C 0.02 1.30 5.30 84.66 0.45 1.74 16 12 N -0.89 -50.53 10.48 21.45 0.22 -50.30 16 13 Si 0.98 42.62 29.54 68.60 2.03 44.65 16 14 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 15 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 16 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 17 C -0.01 -0.37 5.67 24.83 0.14 -0.22 16 18 C -0.19 -10.04 9.04 22.19 0.20 -9.84 16 19 C -0.23 -9.76 10.91 22.19 0.24 -9.52 16 20 C -0.07 -2.77 12.09 66.97 0.81 -1.96 16 21 O -0.19 -9.41 10.63 1.06 0.01 -9.40 16 22 C -0.06 -1.54 4.40 -19.87 -0.09 -1.62 16 23 C -0.11 -2.19 9.67 22.27 0.22 -1.98 16 24 C -0.08 -1.39 10.04 22.26 0.22 -1.17 16 25 C -0.15 -3.07 10.03 22.31 0.22 -2.84 16 26 C 0.07 1.94 7.30 22.37 0.16 2.10 16 27 F -0.15 -4.71 17.27 44.97 0.78 -3.93 16 28 C -0.14 -4.36 7.91 22.32 0.18 -4.19 16 29 H 0.05 1.25 7.40 -2.39 -0.02 1.23 16 30 H 0.07 1.88 8.11 -2.39 -0.02 1.86 16 31 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 33 H 0.12 6.84 7.49 -2.91 -0.02 6.82 16 34 H 0.16 5.66 8.06 -2.91 -0.02 5.64 16 35 H 0.24 6.38 8.06 -2.91 -0.02 6.36 16 36 H 0.16 2.06 7.94 -2.91 -0.02 2.04 16 37 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 38 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 39 H 0.11 3.73 7.51 -2.91 -0.02 3.71 16 Total: -1.00 -74.02 345.96 8.12 -65.90 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: 1.07 Total: 24.61 kcal Atomic # 6 Polarization: -32.30 SS G_CDS: 4.17 Total: -28.13 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: 0.22 Total: -50.30 kcal Atomic # 8 Polarization: -52.64 SS G_CDS: -0.15 Total: -52.79 kcal Atomic # 9 Polarization: -4.71 SS G_CDS: 0.78 Total: -3.93 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -74.02 8.12 -65.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346719679.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.672 kcal (2) G-P(sol) polarization free energy of solvation -74.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds