Wall clock time and date at job start Tue Mar 31 2020 12:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47115 * 2 1 4 4 C 1.50695 * 109.47439 * 239.99976 * 2 1 3 5 5 O 1.20826 * 119.99874 * 240.00447 * 4 2 1 6 6 O 1.34227 * 120.00183 * 59.99504 * 4 2 1 7 7 C 1.45200 * 117.00238 * 180.02562 * 6 4 2 8 8 H 1.09001 * 109.47321 * 330.00022 * 7 6 4 9 9 C 1.50706 * 109.46954 * 210.00471 * 7 6 4 10 10 H 1.07995 * 120.00167 * 359.72237 * 9 7 6 11 11 C 1.37879 * 119.99394 * 179.97438 * 9 7 6 12 12 N 1.31514 * 120.00338 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 119.99424 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47474 * 90.00322 * 13 11 9 15 15 H 1.48507 * 109.46754 * 210.00056 * 13 11 9 16 16 H 1.48498 * 109.47278 * 329.99887 * 13 11 9 17 17 C 1.50698 * 109.46811 * 90.00553 * 7 6 4 18 18 C 1.34515 * 125.78329 * 219.99738 * 17 7 6 19 19 C 1.41387 * 106.83718 * 180.02562 * 18 17 7 20 20 C 1.34512 * 106.84034 * 359.97438 * 19 18 17 21 21 O 1.34293 * 125.79247 * 39.69618 * 17 7 6 22 22 C 1.50695 * 109.46897 * 119.99646 * 2 1 3 23 23 C 1.38270 * 119.98787 * 59.73382 * 22 2 1 24 24 C 1.38226 * 120.05192 * 179.72456 * 23 22 2 25 25 C 1.38211 * 120.02671 * 0.54395 * 24 23 22 26 26 C 1.38439 * 119.97376 * 359.72633 * 25 24 23 27 27 F 1.35104 * 120.02826 * 180.02562 * 26 25 24 28 28 C 1.38177 * 119.98955 * 239.99820 * 22 2 1 29 29 H 1.08996 * 109.46930 * 300.00425 * 1 2 3 30 30 H 1.09003 * 109.46613 * 60.00137 * 1 2 3 31 31 H 1.08997 * 109.47115 * 180.02562 * 1 2 3 32 32 H 0.96996 * 119.99730 * 179.97438 * 12 11 9 33 33 H 1.07998 * 126.58679 * 0.04046 * 18 17 7 34 34 H 1.08004 * 126.57788 * 179.97438 * 19 18 17 35 35 H 1.08001 * 125.79100 * 180.02562 * 20 19 18 36 36 H 1.07996 * 119.97196 * 359.96875 * 23 22 2 37 37 H 1.08000 * 119.98299 * 180.26585 * 24 23 22 38 38 H 1.07994 * 120.01558 * 179.70579 * 25 24 23 39 39 H 1.07997 * 120.01324 * 0.02968 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7270 -1.6928 -1.1195 6 8 1.7081 -0.2519 -2.4495 7 6 2.2269 -0.9864 -3.5896 8 1 3.1797 -1.4443 -3.3238 9 6 2.4290 -0.0416 -4.7461 10 1 2.1871 1.0053 -4.6369 11 6 2.9178 -0.5147 -5.9454 12 7 3.2072 -1.7905 -6.0802 13 14 3.1690 0.6566 -7.3788 14 1 4.5429 1.2176 -7.3248 15 1 2.9841 -0.0778 -8.6563 16 1 2.1797 1.7608 -7.2949 17 6 1.2459 -2.0603 -3.9837 18 6 1.5609 -3.3085 -4.3739 19 6 0.3425 -3.9721 -4.6466 20 6 -0.6440 -3.0898 -4.4062 21 8 -0.0911 -1.9354 -3.9995 22 6 2.0323 -0.7103 1.2305 23 6 1.6935 -2.0325 1.4519 24 6 2.1582 -2.6870 2.5772 25 6 2.9528 -2.0171 3.4883 26 6 3.2881 -0.6917 3.2705 27 9 4.0652 -0.0359 4.1601 28 6 2.8267 -0.0386 2.1399 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.5508 -2.1233 -6.9240 33 1 2.5538 -3.7242 -4.4618 34 1 0.2263 -4.9916 -4.9834 35 1 -1.7015 -3.2791 -4.5169 36 1 1.0687 -2.5553 0.7430 37 1 1.8964 -3.7210 2.7469 38 1 3.3118 -2.5272 4.3698 39 1 3.0873 0.9955 1.9692 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346719682.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:57 Heat of formation + Delta-G solvation = -94.198804 kcal Electronic energy + Delta-G solvation = -26337.986710 eV Core-core repulsion = 22319.970161 eV Total energy + Delta-G solvation = -4018.016548 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.91961 -41.39089 -40.18916 -38.74306 -35.84034 -34.17577 -33.26620 -31.74640 -30.75781 -29.84276 -29.24685 -26.70557 -24.96655 -23.35678 -22.80780 -22.05912 -20.64375 -20.02480 -19.22824 -17.48501 -17.16099 -16.83638 -16.57136 -16.18990 -16.01114 -15.62419 -15.27335 -15.14025 -14.81009 -14.50920 -14.28365 -13.66238 -13.51671 -13.08685 -12.89759 -12.65505 -12.17796 -12.14481 -11.98281 -11.80706 -11.71222 -11.61262 -11.39269 -11.25092 -11.15777 -10.99517 -10.88701 -10.40280 -10.13356 -9.68834 -9.43647 -9.02515 -8.85485 -8.68127 -8.66232 -7.29624 -6.24672 -4.42661 1.10139 1.18131 2.82008 2.84108 3.19136 3.23618 3.27266 3.35459 3.69705 3.92059 4.14332 4.16253 4.26928 4.48868 4.70792 4.92999 5.03649 5.11122 5.17315 5.20987 5.35756 5.40939 5.73961 5.76116 5.82896 5.88898 6.02575 6.02853 6.03622 6.17926 6.30909 6.34214 6.48039 6.67419 6.85167 6.94837 7.10895 7.19272 7.34640 7.65539 7.66897 7.81832 8.31157 8.47065 8.74241 9.24471 10.74214 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.016445 B = 0.003757 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.191818 B = 7450.690238 C = 8266.373404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.048 4.048 3 H 0.115 0.885 4 C 0.458 3.542 5 O -0.507 6.507 6 O -0.345 6.345 7 C 0.298 3.702 8 H 0.078 0.922 9 C -0.532 4.532 10 H 0.078 0.922 11 C 0.070 3.930 12 N -0.867 5.867 13 Si 0.913 3.087 14 H -0.276 1.276 15 H -0.283 1.283 16 H -0.270 1.270 17 C 0.027 3.973 18 C -0.179 4.179 19 C -0.217 4.217 20 C -0.089 4.089 21 O -0.177 6.177 22 C -0.039 4.039 23 C -0.093 4.093 24 C -0.092 4.092 25 C -0.154 4.154 26 C 0.092 3.908 27 F -0.143 7.143 28 C -0.143 4.143 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.269 0.731 33 H 0.140 0.860 34 H 0.130 0.870 35 H 0.184 0.816 36 H 0.128 0.872 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.001 -0.002 13.893 14.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.067 4.067 3 H 0.133 0.867 4 C 0.299 3.701 5 O -0.395 6.395 6 O -0.261 6.261 7 C 0.245 3.755 8 H 0.096 0.904 9 C -0.569 4.569 10 H 0.096 0.904 11 C -0.136 4.136 12 N -0.502 5.502 13 Si 0.740 3.260 14 H -0.201 1.201 15 H -0.209 1.209 16 H -0.194 1.194 17 C -0.024 4.024 18 C -0.198 4.198 19 C -0.237 4.237 20 C -0.156 4.156 21 O -0.073 6.073 22 C -0.040 4.040 23 C -0.111 4.111 24 C -0.110 4.110 25 C -0.173 4.173 26 C 0.073 3.927 27 F -0.122 7.122 28 C -0.162 4.162 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.158 0.842 34 H 0.148 0.852 35 H 0.201 0.799 36 H 0.146 0.854 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.837 -0.163 13.842 14.664 hybrid contribution 0.452 0.091 -1.089 1.183 sum -4.385 -0.071 12.753 13.486 Atomic orbital electron populations 1.21770 0.90998 1.03322 1.03569 1.19944 0.98529 1.00296 0.87911 0.86712 1.23168 0.77918 0.83028 0.85949 1.90643 1.35531 1.25848 1.87474 1.86538 1.69216 1.55754 1.14569 1.19189 0.88935 0.87079 0.80281 0.90409 1.20890 1.45704 0.95040 0.95251 0.90412 1.24941 0.94365 0.95665 0.98627 1.70029 1.41008 1.12782 1.26348 0.86240 0.78820 0.80393 0.80572 1.20143 1.20877 1.19420 1.23527 0.79940 0.96306 1.02634 1.21212 0.98334 0.93614 1.06654 1.21691 0.93393 1.00326 1.08251 1.23598 0.98351 0.85210 1.08458 1.83986 1.21043 1.35161 1.67121 1.19215 0.96352 0.94255 0.94137 1.21072 0.99427 0.93769 0.96804 1.20969 0.96580 0.99950 0.93508 1.21112 1.01407 0.93189 1.01609 1.17578 0.94807 0.91237 0.89122 1.91485 1.72630 1.81145 1.66913 1.20973 0.99974 1.01202 0.94061 0.91255 0.90146 0.91885 0.92138 0.84183 0.85175 0.79897 0.85357 0.84971 0.84968 0.84621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.94 37.16 0.33 -1.35 16 2 C -0.05 -0.68 3.00 -92.93 -0.28 -0.96 16 3 H 0.11 1.39 7.87 -51.93 -0.41 0.99 16 4 C 0.46 9.00 7.09 36.00 0.26 9.26 16 5 O -0.51 -11.25 14.35 -18.75 -0.27 -11.52 16 6 O -0.34 -7.80 9.75 -41.33 -0.40 -8.20 16 7 C 0.30 7.70 2.42 -29.03 -0.07 7.63 16 8 H 0.08 2.17 7.15 -51.93 -0.37 1.80 16 9 C -0.53 -14.40 8.89 -34.44 -0.31 -14.71 16 10 H 0.08 2.07 7.81 -52.49 -0.41 1.66 16 11 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 12 N -0.87 -23.69 10.95 55.43 0.61 -23.08 16 13 Si 0.91 20.64 29.54 -169.99 -5.02 15.62 16 14 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 15 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 17 C 0.03 0.68 5.53 -35.63 -0.20 0.48 16 18 C -0.18 -4.36 9.17 -39.70 -0.36 -4.72 16 19 C -0.22 -4.53 10.91 -39.70 -0.43 -4.96 16 20 C -0.09 -1.77 12.09 29.41 0.36 -1.41 16 21 O -0.18 -4.19 10.65 4.36 0.05 -4.14 16 22 C -0.04 -0.54 4.39 -104.63 -0.46 -1.00 16 23 C -0.09 -1.24 7.94 -39.57 -0.31 -1.56 16 24 C -0.09 -1.06 10.04 -39.60 -0.40 -1.45 16 25 C -0.15 -1.75 10.03 -39.52 -0.40 -2.14 16 26 C 0.09 1.15 7.30 -39.42 -0.29 0.87 16 27 F -0.14 -1.83 17.27 2.25 0.04 -1.79 16 28 C -0.14 -1.81 9.65 -39.51 -0.38 -2.20 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.08 1.02 8.11 -51.93 -0.42 0.60 16 31 H 0.06 0.77 7.37 -51.93 -0.38 0.39 16 32 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.14 3.52 7.87 -52.49 -0.41 3.11 16 34 H 0.13 2.30 8.06 -52.48 -0.42 1.88 16 35 H 0.18 2.74 8.06 -52.49 -0.42 2.32 16 36 H 0.13 1.77 7.51 -52.49 -0.39 1.37 16 37 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 39 H 0.14 1.46 7.94 -52.49 -0.42 1.05 16 LS Contribution 346.85 15.07 5.23 5.23 Total: -1.00 -30.81 346.85 -7.28 -38.09 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -4.47 Total: 6.26 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: -3.04 Total: -16.46 kcal Atomic # 7 Polarization: -23.69 SS G_CDS: 0.61 Total: -23.08 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.63 Total: -23.87 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.81 -7.28 -38.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346719682.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.110 kcal (2) G-P(sol) polarization free energy of solvation -30.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds