Wall clock time and date at job start Tue Mar 31 2020 12:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47115 * 2 1 4 4 C 1.50695 * 109.47439 * 239.99976 * 2 1 3 5 5 O 1.20826 * 119.99874 * 240.00447 * 4 2 1 6 6 O 1.34227 * 120.00183 * 59.99504 * 4 2 1 7 7 C 1.45200 * 117.00238 * 180.02562 * 6 4 2 8 8 H 1.09001 * 109.47321 * 330.00022 * 7 6 4 9 9 C 1.50706 * 109.46954 * 210.00471 * 7 6 4 10 10 H 1.07995 * 120.00167 * 359.72237 * 9 7 6 11 11 C 1.37879 * 119.99394 * 179.97438 * 9 7 6 12 12 N 1.31514 * 120.00338 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 119.99424 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47474 * 90.00322 * 13 11 9 15 15 H 1.48507 * 109.46754 * 210.00056 * 13 11 9 16 16 H 1.48498 * 109.47278 * 329.99887 * 13 11 9 17 17 C 1.50698 * 109.46811 * 90.00553 * 7 6 4 18 18 C 1.34515 * 125.78329 * 219.99738 * 17 7 6 19 19 C 1.41387 * 106.83718 * 180.02562 * 18 17 7 20 20 C 1.34512 * 106.84034 * 359.97438 * 19 18 17 21 21 O 1.34293 * 125.79247 * 39.69618 * 17 7 6 22 22 C 1.50695 * 109.46897 * 119.99646 * 2 1 3 23 23 C 1.38270 * 119.98787 * 59.73382 * 22 2 1 24 24 C 1.38226 * 120.05192 * 179.72456 * 23 22 2 25 25 C 1.38211 * 120.02671 * 0.54395 * 24 23 22 26 26 C 1.38439 * 119.97376 * 359.72633 * 25 24 23 27 27 F 1.35104 * 120.02826 * 180.02562 * 26 25 24 28 28 C 1.38177 * 119.98955 * 239.99820 * 22 2 1 29 29 H 1.08996 * 109.46930 * 300.00425 * 1 2 3 30 30 H 1.09003 * 109.46613 * 60.00137 * 1 2 3 31 31 H 1.08997 * 109.47115 * 180.02562 * 1 2 3 32 32 H 0.96996 * 119.99730 * 179.97438 * 12 11 9 33 33 H 1.07998 * 126.58679 * 0.04046 * 18 17 7 34 34 H 1.08004 * 126.57788 * 179.97438 * 19 18 17 35 35 H 1.08001 * 125.79100 * 180.02562 * 20 19 18 36 36 H 1.07996 * 119.97196 * 359.96875 * 23 22 2 37 37 H 1.08000 * 119.98299 * 180.26585 * 24 23 22 38 38 H 1.07994 * 120.01558 * 179.70579 * 25 24 23 39 39 H 1.07997 * 120.01324 * 0.02968 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7270 -1.6928 -1.1195 6 8 1.7081 -0.2519 -2.4495 7 6 2.2269 -0.9864 -3.5896 8 1 3.1797 -1.4443 -3.3238 9 6 2.4290 -0.0416 -4.7461 10 1 2.1871 1.0053 -4.6369 11 6 2.9178 -0.5147 -5.9454 12 7 3.2072 -1.7905 -6.0802 13 14 3.1690 0.6566 -7.3788 14 1 4.5429 1.2176 -7.3248 15 1 2.9841 -0.0778 -8.6563 16 1 2.1797 1.7608 -7.2949 17 6 1.2459 -2.0603 -3.9837 18 6 1.5609 -3.3085 -4.3739 19 6 0.3425 -3.9721 -4.6466 20 6 -0.6440 -3.0898 -4.4062 21 8 -0.0911 -1.9354 -3.9995 22 6 2.0323 -0.7103 1.2305 23 6 1.6935 -2.0325 1.4519 24 6 2.1582 -2.6870 2.5772 25 6 2.9528 -2.0171 3.4883 26 6 3.2881 -0.6917 3.2705 27 9 4.0652 -0.0359 4.1601 28 6 2.8267 -0.0386 2.1399 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.5508 -2.1233 -6.9240 33 1 2.5538 -3.7242 -4.4618 34 1 0.2263 -4.9916 -4.9834 35 1 -1.7015 -3.2791 -4.5169 36 1 1.0687 -2.5553 0.7430 37 1 1.8964 -3.7210 2.7469 38 1 3.3118 -2.5272 4.3698 39 1 3.0873 0.9955 1.9692 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346719682.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:56 Heat of formation + Delta-G solvation = -109.388481 kcal Electronic energy + Delta-G solvation = -26338.645384 eV Core-core repulsion = 22319.970161 eV Total energy + Delta-G solvation = -4018.675222 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.89454 -43.17071 -41.63448 -39.95110 -37.53857 -35.46164 -35.10849 -33.53819 -31.76759 -31.54064 -30.36023 -28.58096 -26.23399 -25.01903 -23.76483 -23.44322 -22.36784 -21.57296 -20.86625 -19.08254 -18.60194 -18.42323 -18.04481 -17.32288 -17.18057 -17.01535 -16.69828 -16.61026 -16.43258 -16.25317 -15.39821 -15.06019 -14.66608 -14.57146 -14.17465 -13.89469 -13.73535 -13.56504 -13.47004 -13.27004 -13.10885 -13.03299 -12.97404 -12.80396 -12.71668 -12.43413 -12.21458 -12.02634 -11.86600 -11.36462 -11.24207 -10.80336 -10.51231 -9.99108 -9.65470 -9.11136 -8.24389 -6.52967 0.11338 0.21877 1.10756 1.26982 1.39696 1.41958 1.52405 1.85044 2.10871 2.37409 2.42745 2.67436 3.01145 3.15854 3.44771 3.70431 3.91876 4.05376 4.10990 4.17295 4.21009 4.24576 4.40575 4.42646 4.56200 4.65339 4.79268 4.82741 4.90174 5.05675 5.10273 5.16074 5.20955 5.32873 5.34551 5.42503 5.46038 5.49497 5.67739 5.82753 5.90410 5.96595 6.48839 6.58375 6.91044 7.19275 8.72394 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.016445 B = 0.003757 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.191818 B = 7450.690238 C = 8266.373404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.038 4.038 3 H 0.138 0.862 4 C 0.451 3.549 5 O -0.538 6.538 6 O -0.352 6.352 7 C 0.302 3.698 8 H 0.040 0.960 9 C -0.557 4.557 10 H 0.075 0.925 11 C 0.025 3.975 12 N -0.891 5.891 13 Si 0.979 3.021 14 H -0.267 1.267 15 H -0.279 1.279 16 H -0.264 1.264 17 C -0.001 4.001 18 C -0.194 4.194 19 C -0.228 4.228 20 C -0.069 4.069 21 O -0.192 6.192 22 C -0.055 4.055 23 C -0.109 4.109 24 C -0.091 4.091 25 C -0.148 4.148 26 C 0.079 3.921 27 F -0.145 7.145 28 C -0.147 4.147 29 H 0.102 0.898 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.270 0.730 33 H 0.119 0.881 34 H 0.164 0.836 35 H 0.240 0.760 36 H 0.117 0.883 37 H 0.158 0.842 38 H 0.159 0.841 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.498 0.217 14.505 15.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.057 4.057 3 H 0.155 0.845 4 C 0.295 3.705 5 O -0.428 6.428 6 O -0.269 6.269 7 C 0.248 3.752 8 H 0.058 0.942 9 C -0.593 4.593 10 H 0.093 0.907 11 C -0.178 4.178 12 N -0.526 5.526 13 Si 0.802 3.198 14 H -0.192 1.192 15 H -0.204 1.204 16 H -0.188 1.188 17 C -0.051 4.051 18 C -0.214 4.214 19 C -0.247 4.247 20 C -0.135 4.135 21 O -0.089 6.089 22 C -0.055 4.055 23 C -0.127 4.127 24 C -0.109 4.109 25 C -0.167 4.167 26 C 0.060 3.940 27 F -0.124 7.124 28 C -0.165 4.165 29 H 0.121 0.879 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.137 0.863 34 H 0.182 0.818 35 H 0.256 0.744 36 H 0.135 0.865 37 H 0.176 0.824 38 H 0.176 0.824 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -6.337 0.061 14.479 15.806 hybrid contribution 0.907 -0.076 -1.184 1.493 sum -5.430 -0.015 13.296 14.362 Atomic orbital electron populations 1.21779 0.89207 1.03348 1.04766 1.20076 0.99891 1.00601 0.85097 0.84450 1.24348 0.77036 0.82879 0.86242 1.90615 1.37005 1.27473 1.87694 1.86525 1.69360 1.55734 1.15234 1.18715 0.88135 0.87227 0.81103 0.94226 1.21163 1.46649 0.95213 0.96302 0.90701 1.25806 0.93736 0.97267 1.00989 1.70164 1.41254 1.14305 1.26864 0.85241 0.79096 0.78384 0.77106 1.19229 1.20407 1.18792 1.23269 0.80754 0.96502 1.04589 1.21268 0.98911 0.94146 1.07057 1.22025 0.91877 1.02094 1.08680 1.24666 1.00506 0.83274 1.05062 1.83959 1.20231 1.36991 1.67737 1.19199 0.97502 0.94611 0.94171 1.21170 0.99981 0.94016 0.97535 1.21255 0.95938 1.01082 0.92621 1.21430 1.00365 0.92736 1.02168 1.17765 0.95109 0.91876 0.89218 1.91481 1.72710 1.81272 1.66915 1.21131 0.99421 1.02062 0.93914 0.87925 0.90939 0.92488 0.92087 0.86291 0.81844 0.74391 0.86491 0.82426 0.82362 0.83066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 8.94 71.98 0.64 -2.47 16 2 C -0.04 -1.07 3.00 -12.29 -0.04 -1.10 16 3 H 0.14 3.20 7.87 -2.39 -0.02 3.18 16 4 C 0.45 18.44 7.09 71.23 0.51 18.94 16 5 O -0.54 -25.22 14.35 21.97 0.32 -24.90 16 6 O -0.35 -16.66 9.75 -49.40 -0.48 -17.14 16 7 C 0.30 16.43 2.42 29.10 0.07 16.50 16 8 H 0.04 2.41 7.15 -2.39 -0.02 2.39 16 9 C -0.56 -31.22 8.89 25.60 0.23 -30.99 16 10 H 0.07 4.10 7.81 -2.91 -0.02 4.08 16 11 C 0.03 1.38 5.30 84.66 0.45 1.83 16 12 N -0.89 -50.18 10.95 21.45 0.23 -49.95 16 13 Si 0.98 42.61 29.54 68.60 2.03 44.63 16 14 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 15 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 16 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 17 C 0.00 -0.03 5.53 24.83 0.14 0.11 16 18 C -0.19 -9.75 9.17 22.19 0.20 -9.55 16 19 C -0.23 -9.22 10.91 22.19 0.24 -8.98 16 20 C -0.07 -2.58 12.09 66.97 0.81 -1.77 16 21 O -0.19 -9.08 10.65 -1.11 -0.01 -9.09 16 22 C -0.05 -1.46 4.39 -19.87 -0.09 -1.55 16 23 C -0.11 -2.89 7.94 22.27 0.18 -2.71 16 24 C -0.09 -1.96 10.04 22.26 0.22 -1.73 16 25 C -0.15 -3.06 10.03 22.31 0.22 -2.84 16 26 C 0.08 1.88 7.30 22.38 0.16 2.04 16 27 F -0.15 -3.49 17.27 44.97 0.78 -2.71 16 28 C -0.15 -3.55 9.65 22.31 0.22 -3.33 16 29 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.07 1.80 8.11 -2.39 -0.02 1.78 16 31 H 0.06 1.38 7.37 -2.39 -0.02 1.36 16 32 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 33 H 0.12 6.36 7.87 -2.91 -0.02 6.34 16 34 H 0.16 5.36 8.06 -2.91 -0.02 5.34 16 35 H 0.24 5.99 8.06 -2.91 -0.02 5.96 16 36 H 0.12 3.31 7.51 -2.91 -0.02 3.29 16 37 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 38 H 0.16 2.38 8.06 -2.91 -0.02 2.35 16 39 H 0.15 3.04 7.94 -2.91 -0.02 3.02 16 Total: -1.00 -70.08 346.85 8.10 -61.98 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: 1.07 Total: 24.79 kcal Atomic # 6 Polarization: -31.77 SS G_CDS: 4.17 Total: -27.61 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: 0.23 Total: -49.95 kcal Atomic # 8 Polarization: -50.96 SS G_CDS: -0.18 Total: -51.14 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.78 Total: -2.71 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Total: -70.08 8.10 -61.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346719682.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.406 kcal (2) G-P(sol) polarization free energy of solvation -70.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds