Wall clock time and date at job start Tue Mar 31 2020 12:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00187 * 2 1 4 4 H 1.48497 * 109.46968 * 245.00678 * 3 2 1 5 5 H 1.48498 * 109.47027 * 5.00566 * 3 2 1 6 6 H 1.48497 * 109.46769 * 125.00536 * 3 2 1 7 7 C 1.37876 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00345 * 156.95701 * 7 2 1 9 9 C 1.50702 * 119.99969 * 336.95399 * 7 2 1 10 10 C 1.53005 * 115.54736 * 323.89258 * 9 7 2 11 11 O 1.45197 * 109.47348 * 282.08837 * 10 9 7 12 12 C 1.34228 * 116.99900 * 184.74592 * 11 10 9 13 13 O 1.20823 * 119.99985 * 355.36951 * 12 11 10 14 14 C 1.50703 * 119.99962 * 175.36269 * 12 11 10 15 15 S 1.81403 * 115.56206 * 337.31551 * 14 12 11 16 16 C 1.76203 * 102.99995 * 280.63031 * 15 14 12 17 17 C 1.38970 * 120.07986 * 8.21454 * 16 15 14 18 18 C 1.38081 * 119.91554 * 179.72575 * 17 16 15 19 19 C 1.38306 * 120.08229 * 0.52690 * 18 17 16 20 20 C 1.38302 * 120.15987 * 359.76634 * 19 18 17 21 21 C 1.38088 * 120.07874 * 359.96020 * 20 19 18 22 22 C 1.53003 * 117.50099 * 191.62955 * 14 12 11 23 23 C 1.52992 * 117.50110 * 123.00549 * 14 12 11 24 24 C 1.52997 * 117.52131 * 109.59774 * 9 7 2 25 25 C 1.52996 * 117.50101 * 178.22898 * 9 7 2 26 26 H 0.96999 * 119.99857 * 5.01596 * 1 2 3 27 27 H 1.09002 * 109.46697 * 162.08693 * 10 9 7 28 28 H 1.09003 * 109.47058 * 42.08844 * 10 9 7 29 29 H 1.08001 * 120.04189 * 359.97438 * 17 16 15 30 30 H 1.08004 * 119.96057 * 180.27750 * 18 17 16 31 31 H 1.07997 * 119.91913 * 179.74774 * 19 18 17 32 32 H 1.07993 * 119.96006 * 179.97438 * 20 19 18 33 33 H 1.07998 * 120.03723 * 180.02562 * 21 20 19 34 34 H 1.08992 * 117.49968 * 145.02250 * 22 14 12 35 35 H 1.09000 * 117.49441 * 359.97438 * 22 14 12 36 36 H 1.09003 * 117.49660 * 359.97438 * 23 14 12 37 37 H 1.08995 * 117.52378 * 214.97598 * 23 14 12 38 38 H 1.09006 * 117.49822 * 214.97116 * 24 9 7 39 39 H 1.08999 * 117.49656 * 359.97438 * 24 9 7 40 40 H 1.09008 * 117.49992 * 359.97103 * 25 9 7 41 41 H 1.08996 * 117.50314 * 144.97307 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.0089 1.7506 -1.2690 5 1 1.2888 2.7438 0.1222 6 1 3.1922 1.6447 1.1468 7 6 2.0045 -1.1940 -0.0005 8 1 3.0198 -1.2313 -0.3666 9 6 1.3412 -2.4473 0.5098 10 6 0.3992 -2.2573 1.7005 11 8 1.1792 -2.1148 2.9168 12 6 0.4990 -2.0374 4.0714 13 8 -0.7087 -2.0028 4.0599 14 6 1.2416 -1.9939 5.3820 15 16 2.9219 -2.6767 5.3526 16 6 2.6450 -4.4149 5.4354 17 6 1.3549 -4.9205 5.3293 18 6 1.1423 -6.2835 5.3889 19 6 2.2102 -7.1446 5.5649 20 6 3.4948 -6.6447 5.6771 21 6 3.7156 -5.2831 5.6127 22 6 0.4257 -2.1803 6.6629 23 6 0.9801 -0.8005 6.3029 24 6 0.9750 -3.5215 -0.5163 25 6 2.1438 -3.7482 0.4447 26 1 -0.4850 0.8368 -0.0734 27 1 -0.2552 -3.1247 1.7880 28 1 -0.2030 -1.3617 1.5480 29 1 0.5200 -4.2484 5.1963 30 1 0.1405 -6.6775 5.3020 31 1 2.0405 -8.2100 5.6153 32 1 4.3262 -7.3199 5.8149 33 1 4.7190 -4.8934 5.6999 34 1 0.8986 -2.7131 7.4878 35 1 -0.6483 -2.3340 6.5575 36 1 0.2712 -0.0465 5.9606 37 1 1.8174 -0.4253 6.8912 38 1 0.0630 -4.0929 -0.3431 39 1 1.2135 -3.3217 -1.5609 40 1 3.1516 -3.6977 0.0322 41 1 2.0011 -4.4686 1.2501 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350051964.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:12 Heat of formation + Delta-G solvation = 3.226532 kcal Electronic energy + Delta-G solvation = -24495.101488 eV Core-core repulsion = 21047.522795 eV Total energy + Delta-G solvation = -3447.578693 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.07665 -38.87811 -37.40153 -36.21359 -35.05681 -32.24181 -31.03812 -30.95891 -27.26673 -25.59583 -24.38110 -23.05113 -22.70947 -22.31710 -21.21354 -20.02583 -19.20564 -18.12458 -17.52350 -16.72078 -15.90768 -15.77279 -15.61310 -15.18066 -14.83517 -14.60262 -14.24585 -13.88401 -13.46761 -13.43692 -13.07435 -12.97526 -12.36473 -12.07591 -11.84019 -11.73570 -11.62732 -11.30150 -11.18227 -10.96425 -10.89143 -10.80959 -10.52291 -10.44214 -10.30049 -9.89214 -9.74716 -9.72817 -9.41082 -9.12310 -9.00754 -8.74567 -8.07750 -7.31301 -6.16373 -4.08541 1.19140 1.34410 1.40810 2.12594 2.61177 3.10855 3.27305 3.33766 3.39884 3.59977 3.69475 4.29297 4.34992 4.59613 4.82248 4.83941 4.90339 5.02338 5.05965 5.35840 5.36707 5.38948 5.48198 5.60760 5.63693 5.70676 5.86293 5.94534 5.98875 6.20849 6.25763 6.33951 6.39931 6.46145 6.63314 6.69124 6.73507 6.86939 6.96478 7.26878 7.34637 7.40813 7.87515 8.34295 8.38976 8.82301 9.46007 10.88490 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.013642 B = 0.004904 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.960968 B = 5707.985002 C = 6497.551637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.073 3.927 3 Si 0.887 3.113 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.490 4.490 8 H 0.066 0.934 9 C 0.051 3.949 10 C 0.099 3.901 11 O -0.319 6.319 12 C 0.491 3.509 13 O -0.515 6.515 14 C -0.162 4.162 15 S -0.010 6.010 16 C -0.087 4.087 17 C -0.124 4.124 18 C -0.100 4.100 19 C -0.129 4.129 20 C -0.103 4.103 21 C -0.102 4.102 22 C -0.124 4.124 23 C -0.105 4.105 24 C -0.191 4.191 25 C -0.197 4.197 26 H 0.266 0.734 27 H 0.034 0.966 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.065 0.935 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.424 -8.628 15.181 17.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.130 4.130 3 Si 0.714 3.286 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.527 4.527 8 H 0.084 0.916 9 C 0.050 3.950 10 C 0.027 3.973 11 O -0.233 6.233 12 C 0.331 3.669 13 O -0.406 6.406 14 C -0.274 4.274 15 S 0.238 5.762 16 C -0.199 4.199 17 C -0.148 4.148 18 C -0.120 4.120 19 C -0.150 4.150 20 C -0.123 4.123 21 C -0.126 4.126 22 C -0.163 4.163 23 C -0.143 4.143 24 C -0.229 4.229 25 C -0.235 4.235 26 H 0.076 0.924 27 H 0.052 0.948 28 H 0.135 0.865 29 H 0.138 0.862 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.961 -7.711 15.085 17.398 hybrid contribution -0.927 0.042 -0.360 0.995 sum 3.034 -7.669 14.724 16.877 Atomic orbital electron populations 1.69874 1.06326 1.27442 1.47390 1.24966 0.94607 0.99352 0.94082 0.86716 0.80136 0.82690 0.79053 1.20099 1.21193 1.19651 1.20392 0.99368 0.90485 1.42416 0.91623 1.18798 0.95788 0.88923 0.91485 1.23136 0.92964 1.02904 0.78305 1.86522 1.41518 1.80558 1.14724 1.21819 0.85822 0.73368 0.85847 1.90624 1.14961 1.46920 1.88060 1.23340 0.99333 1.12529 0.92193 1.85184 1.04035 0.95897 1.91098 1.21956 0.96578 0.97818 1.03598 1.21224 0.95459 0.96315 1.01790 1.21061 0.99215 0.92857 0.98856 1.21136 0.92804 0.99615 1.01402 1.21037 0.97092 0.94625 0.99561 1.20707 0.97630 0.92839 1.01412 1.23380 1.00772 0.99439 0.92746 1.23143 1.03234 0.90858 0.97077 1.23001 0.97176 1.05965 0.96756 1.22789 0.95833 1.02823 1.02015 0.92434 0.94786 0.86469 0.86206 0.85904 0.85998 0.85668 0.85545 0.86602 0.86395 0.86580 0.86274 0.91689 0.89701 0.90270 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.65 11.22 55.43 0.62 -24.03 16 2 C 0.07 2.02 5.02 -17.82 -0.09 1.93 16 3 Si 0.89 21.13 29.60 -169.99 -5.03 16.10 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.49 -13.56 8.96 -34.44 -0.31 -13.87 16 8 H 0.07 1.81 7.92 -52.49 -0.42 1.39 16 9 C 0.05 1.30 1.97 -155.66 -0.31 0.99 16 10 C 0.10 2.51 5.11 37.16 0.19 2.70 16 11 O -0.32 -7.54 9.70 -39.25 -0.38 -7.92 16 12 C 0.49 10.10 6.39 36.01 0.23 10.34 16 13 O -0.51 -11.42 16.06 -18.75 -0.30 -11.72 16 14 C -0.16 -2.55 1.45 -91.77 -0.13 -2.68 16 15 S -0.01 -0.16 21.41 -107.50 -2.30 -2.46 16 16 C -0.09 -1.27 6.10 -39.04 -0.24 -1.51 16 17 C -0.12 -1.82 8.98 -39.37 -0.35 -2.18 16 18 C -0.10 -1.26 10.04 -39.61 -0.40 -1.66 16 19 C -0.13 -1.42 10.04 -39.53 -0.40 -1.81 16 20 C -0.10 -1.13 10.04 -39.61 -0.40 -1.53 16 21 C -0.10 -1.29 9.79 -39.36 -0.39 -1.67 16 22 C -0.12 -1.47 8.59 -26.73 -0.23 -1.70 16 23 C -0.10 -1.27 10.00 -26.74 -0.27 -1.54 16 24 C -0.19 -4.43 9.88 -26.73 -0.26 -4.69 16 25 C -0.20 -4.46 9.95 -26.73 -0.27 -4.73 16 26 H 0.27 7.15 8.32 -40.82 -0.34 6.81 16 27 H 0.03 0.83 7.92 -51.93 -0.41 0.41 16 28 H 0.12 3.28 5.53 -51.93 -0.29 2.99 16 29 H 0.12 1.90 4.90 -52.49 -0.26 1.64 16 30 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 31 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 32 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.12 1.43 7.72 -51.93 -0.40 1.03 16 36 H 0.12 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.12 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.06 1.41 8.10 -51.93 -0.42 0.99 16 39 H 0.08 1.95 8.14 -51.93 -0.42 1.53 16 40 H 0.08 1.74 8.14 -51.92 -0.42 1.31 16 41 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 363.14 15.07 5.47 5.47 Total: -1.00 -30.84 363.14 -11.09 -41.93 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -5.56 Total: 6.25 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: -3.61 Total: -23.62 kcal Atomic # 7 Polarization: -24.65 SS G_CDS: 0.62 Total: -24.03 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.68 Total: -19.64 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Atomic # 16 Polarization: -0.16 SS G_CDS: -2.30 Total: -2.46 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.84 -11.09 -41.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350051964.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.157 kcal (2) G-P(sol) polarization free energy of solvation -30.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds