Wall clock time and date at job start Tue Mar 31 2020 12:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00187 * 2 1 4 4 H 1.48497 * 109.46968 * 245.00678 * 3 2 1 5 5 H 1.48498 * 109.47027 * 5.00566 * 3 2 1 6 6 H 1.48497 * 109.46769 * 125.00536 * 3 2 1 7 7 C 1.37876 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00345 * 156.95701 * 7 2 1 9 9 C 1.50702 * 119.99969 * 336.95399 * 7 2 1 10 10 C 1.53005 * 115.54736 * 323.89258 * 9 7 2 11 11 O 1.45197 * 109.47348 * 282.08837 * 10 9 7 12 12 C 1.34228 * 116.99900 * 184.74592 * 11 10 9 13 13 O 1.20823 * 119.99985 * 355.36951 * 12 11 10 14 14 C 1.50703 * 119.99962 * 175.36269 * 12 11 10 15 15 S 1.81403 * 115.56206 * 337.31551 * 14 12 11 16 16 C 1.76203 * 102.99995 * 280.63031 * 15 14 12 17 17 C 1.38970 * 120.07986 * 8.21454 * 16 15 14 18 18 C 1.38081 * 119.91554 * 179.72575 * 17 16 15 19 19 C 1.38306 * 120.08229 * 0.52690 * 18 17 16 20 20 C 1.38302 * 120.15987 * 359.76634 * 19 18 17 21 21 C 1.38088 * 120.07874 * 359.96020 * 20 19 18 22 22 C 1.53003 * 117.50099 * 191.62955 * 14 12 11 23 23 C 1.52992 * 117.50110 * 123.00549 * 14 12 11 24 24 C 1.52997 * 117.52131 * 109.59774 * 9 7 2 25 25 C 1.52996 * 117.50101 * 178.22898 * 9 7 2 26 26 H 0.96999 * 119.99857 * 5.01596 * 1 2 3 27 27 H 1.09002 * 109.46697 * 162.08693 * 10 9 7 28 28 H 1.09003 * 109.47058 * 42.08844 * 10 9 7 29 29 H 1.08001 * 120.04189 * 359.97438 * 17 16 15 30 30 H 1.08004 * 119.96057 * 180.27750 * 18 17 16 31 31 H 1.07997 * 119.91913 * 179.74774 * 19 18 17 32 32 H 1.07993 * 119.96006 * 179.97438 * 20 19 18 33 33 H 1.07998 * 120.03723 * 180.02562 * 21 20 19 34 34 H 1.08992 * 117.49968 * 145.02250 * 22 14 12 35 35 H 1.09000 * 117.49441 * 359.97438 * 22 14 12 36 36 H 1.09003 * 117.49660 * 359.97438 * 23 14 12 37 37 H 1.08995 * 117.52378 * 214.97598 * 23 14 12 38 38 H 1.09006 * 117.49822 * 214.97116 * 24 9 7 39 39 H 1.08999 * 117.49656 * 359.97438 * 24 9 7 40 40 H 1.09008 * 117.49992 * 359.97103 * 25 9 7 41 41 H 1.08996 * 117.50314 * 144.97307 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.0089 1.7506 -1.2690 5 1 1.2888 2.7438 0.1222 6 1 3.1922 1.6447 1.1468 7 6 2.0045 -1.1940 -0.0005 8 1 3.0198 -1.2313 -0.3666 9 6 1.3412 -2.4473 0.5098 10 6 0.3992 -2.2573 1.7005 11 8 1.1792 -2.1148 2.9168 12 6 0.4990 -2.0374 4.0714 13 8 -0.7087 -2.0028 4.0599 14 6 1.2416 -1.9939 5.3820 15 16 2.9219 -2.6767 5.3526 16 6 2.6450 -4.4149 5.4354 17 6 1.3549 -4.9205 5.3293 18 6 1.1423 -6.2835 5.3889 19 6 2.2102 -7.1446 5.5649 20 6 3.4948 -6.6447 5.6771 21 6 3.7156 -5.2831 5.6127 22 6 0.4257 -2.1803 6.6629 23 6 0.9801 -0.8005 6.3029 24 6 0.9750 -3.5215 -0.5163 25 6 2.1438 -3.7482 0.4447 26 1 -0.4850 0.8368 -0.0734 27 1 -0.2552 -3.1247 1.7880 28 1 -0.2030 -1.3617 1.5480 29 1 0.5200 -4.2484 5.1963 30 1 0.1405 -6.6775 5.3020 31 1 2.0405 -8.2100 5.6153 32 1 4.3262 -7.3199 5.8149 33 1 4.7190 -4.8934 5.6999 34 1 0.8986 -2.7131 7.4878 35 1 -0.6483 -2.3340 6.5575 36 1 0.2712 -0.0465 5.9606 37 1 1.8174 -0.4253 6.8912 38 1 0.0630 -4.0929 -0.3431 39 1 1.2135 -3.3217 -1.5609 40 1 3.1516 -3.6977 0.0322 41 1 2.0011 -4.4686 1.2501 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350051964.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:11 Heat of formation + Delta-G solvation = -10.255726 kcal Electronic energy + Delta-G solvation = -24495.686123 eV Core-core repulsion = 21047.522795 eV Total energy + Delta-G solvation = -3448.163327 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.68169 -39.82513 -39.02117 -37.73748 -36.77204 -34.31803 -31.97283 -31.88895 -29.06382 -27.61309 -25.89870 -24.04887 -23.65210 -23.29270 -23.05279 -21.47416 -21.19370 -19.49039 -18.64510 -18.59100 -17.49470 -17.38132 -16.84777 -16.61237 -16.28153 -15.83679 -15.76602 -15.24506 -14.98895 -14.47502 -14.35201 -14.04023 -13.98434 -13.82448 -13.65637 -13.00162 -12.93318 -12.81490 -12.67968 -12.39371 -12.26514 -12.21178 -12.18358 -11.99015 -11.81818 -11.67315 -11.40074 -11.11629 -11.04711 -10.71359 -10.68803 -10.09430 -9.95322 -8.42333 -8.23871 -6.21889 0.23148 0.29624 0.39859 0.84532 1.30811 1.36381 1.41547 1.49489 1.58237 2.36083 2.45285 2.75983 2.88349 3.15384 3.39644 3.59431 3.72364 3.89423 3.99543 4.06511 4.22952 4.24919 4.33307 4.44780 4.46950 4.49587 4.55172 4.66621 4.69682 4.77907 4.85232 4.88288 4.92969 5.04192 5.09930 5.30900 5.35723 5.44244 5.45394 5.54635 5.58652 5.76557 5.98212 6.29020 6.66604 6.72081 7.34660 8.80495 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.013642 B = 0.004904 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.960968 B = 5707.985002 C = 6497.551637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.031 3.969 3 Si 0.944 3.056 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.510 4.510 8 H 0.060 0.940 9 C 0.015 3.985 10 C 0.112 3.888 11 O -0.334 6.334 12 C 0.485 3.515 13 O -0.541 6.541 14 C -0.186 4.186 15 S -0.025 6.025 16 C -0.105 4.105 17 C -0.145 4.145 18 C -0.111 4.111 19 C -0.123 4.123 20 C -0.099 4.099 21 C -0.110 4.110 22 C -0.099 4.099 23 C -0.091 4.091 24 C -0.184 4.184 25 C -0.174 4.174 26 H 0.266 0.734 27 H 0.032 0.968 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.136 0.864 31 H 0.154 0.846 32 H 0.159 0.841 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.150 0.850 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.923 -9.873 16.688 20.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.170 4.170 3 Si 0.769 3.231 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.547 4.547 8 H 0.078 0.922 9 C 0.015 3.985 10 C 0.038 3.962 11 O -0.249 6.249 12 C 0.328 3.672 13 O -0.433 6.433 14 C -0.297 4.297 15 S 0.223 5.777 16 C -0.218 4.218 17 C -0.169 4.169 18 C -0.130 4.130 19 C -0.144 4.144 20 C -0.118 4.118 21 C -0.134 4.134 22 C -0.138 4.138 23 C -0.129 4.129 24 C -0.222 4.222 25 C -0.211 4.211 26 H 0.075 0.925 27 H 0.050 0.950 28 H 0.104 0.896 29 H 0.117 0.883 30 H 0.153 0.847 31 H 0.172 0.828 32 H 0.177 0.823 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.168 0.832 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.467 -8.971 16.597 19.642 hybrid contribution -1.415 0.313 -0.801 1.656 sum 4.052 -8.658 15.796 18.463 Atomic orbital electron populations 1.69982 1.07518 1.27990 1.48240 1.25646 0.95286 1.02250 0.93837 0.85810 0.78961 0.79046 0.79268 1.18993 1.20737 1.19662 1.20626 0.99234 0.91919 1.42881 0.92216 1.18914 0.97551 0.89542 0.92533 1.22730 0.92800 1.01143 0.79482 1.86523 1.41856 1.81254 1.15264 1.22779 0.85994 0.71929 0.86501 1.90589 1.16202 1.48085 1.88455 1.23377 0.99840 1.16080 0.90454 1.85051 1.03868 0.97274 1.91533 1.22050 0.97196 0.97348 1.05208 1.21179 0.95042 0.97110 1.03554 1.21324 1.00665 0.92272 0.98784 1.21540 0.92265 1.01008 0.99557 1.21466 0.98219 0.94306 0.97839 1.21004 0.97679 0.93560 1.01167 1.23505 1.00189 0.99172 0.90894 1.23407 1.03898 0.90394 0.95242 1.22994 0.98060 1.04739 0.96398 1.22748 0.95861 1.00844 1.01667 0.92505 0.95010 0.89566 0.88255 0.84652 0.82850 0.82331 0.84343 0.84000 0.86938 0.87089 0.83245 0.90474 0.89795 0.89542 0.90350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.08 11.22 21.45 0.24 -51.84 16 2 C 0.03 1.72 5.02 84.66 0.42 2.14 16 3 Si 0.94 43.76 29.60 68.60 2.03 45.80 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 6 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.51 -28.64 8.96 25.60 0.23 -28.41 16 8 H 0.06 3.32 7.92 -2.91 -0.02 3.30 16 9 C 0.02 0.79 1.97 -52.93 -0.10 0.68 16 10 C 0.11 5.84 5.11 71.98 0.37 6.20 16 11 O -0.33 -16.30 9.70 -51.40 -0.50 -16.80 16 12 C 0.49 20.60 6.39 71.24 0.46 21.05 16 13 O -0.54 -25.02 16.06 21.97 0.35 -24.66 16 14 C -0.19 -5.82 1.45 -11.54 -0.02 -5.84 16 15 S -0.02 -0.75 21.41 -56.49 -1.21 -1.96 16 16 C -0.11 -3.00 6.10 22.62 0.14 -2.87 16 17 C -0.15 -4.21 8.98 22.41 0.20 -4.01 16 18 C -0.11 -2.62 10.04 22.25 0.22 -2.39 16 19 C -0.12 -2.33 10.04 22.30 0.22 -2.10 16 20 C -0.10 -1.84 10.04 22.25 0.22 -1.61 16 21 C -0.11 -2.57 9.79 22.41 0.22 -2.35 16 22 C -0.10 -2.24 8.59 30.59 0.26 -1.98 16 23 C -0.09 -2.11 10.00 30.59 0.31 -1.80 16 24 C -0.18 -8.51 9.88 30.59 0.30 -8.21 16 25 C -0.17 -7.78 9.95 30.59 0.30 -7.47 16 26 H 0.27 14.64 8.32 -92.71 -0.77 13.87 16 27 H 0.03 1.61 7.92 -2.39 -0.02 1.59 16 28 H 0.09 5.06 5.53 -2.39 -0.01 5.04 16 29 H 0.10 3.24 4.90 -2.91 -0.01 3.22 16 30 H 0.14 2.72 8.06 -2.91 -0.02 2.69 16 31 H 0.15 1.90 8.06 -2.91 -0.02 1.87 16 32 H 0.16 1.86 8.06 -2.91 -0.02 1.83 16 33 H 0.14 2.79 8.06 -2.91 -0.02 2.76 16 34 H 0.14 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.11 2.70 7.72 -2.39 -0.02 2.68 16 36 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 37 H 0.15 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.08 3.33 8.10 -2.38 -0.02 3.31 16 39 H 0.08 3.85 8.14 -2.39 -0.02 3.83 16 40 H 0.09 3.71 8.14 -2.38 -0.02 3.69 16 41 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 Total: -1.00 -68.39 363.14 5.71 -62.68 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 1.03 Total: 25.76 kcal Atomic # 6 Polarization: -42.73 SS G_CDS: 3.76 Total: -38.97 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: 0.24 Total: -51.84 kcal Atomic # 8 Polarization: -41.32 SS G_CDS: -0.15 Total: -41.46 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: -0.75 SS G_CDS: -1.21 Total: -1.96 kcal Total: -68.39 5.71 -62.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350051964.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.424 kcal (2) G-P(sol) polarization free energy of solvation -68.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds