Wall clock time and date at job start Tue Mar 31 2020 12:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 119.99845 * 2 1 4 4 H 1.48499 * 109.47152 * 240.00049 * 3 2 1 5 5 H 1.48493 * 109.47089 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46816 * 120.00406 * 3 2 1 7 7 C 1.37877 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00450 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99861 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47135 * 179.97438 * 9 7 2 11 11 O 1.45202 * 109.46761 * 59.99936 * 9 7 2 12 12 C 1.34230 * 116.99836 * 90.00637 * 11 9 7 13 13 O 1.20833 * 119.99930 * 359.97438 * 12 11 9 14 14 C 1.50697 * 120.00262 * 180.27336 * 12 11 9 15 15 C 1.52996 * 109.47491 * 179.72204 * 14 12 11 16 16 C 1.50702 * 109.47159 * 180.02562 * 15 14 12 17 17 C 1.38248 * 119.97325 * 269.72484 * 16 15 14 18 18 C 1.38199 * 120.02295 * 179.72816 * 17 16 15 19 19 C 1.38452 * 119.97404 * 0.56721 * 18 17 16 20 20 F 1.35105 * 120.02307 * 179.68620 * 19 18 17 21 21 C 1.38460 * 119.95323 * 359.70704 * 19 18 17 22 22 C 1.38194 * 119.96934 * 359.97438 * 21 19 18 23 23 C 1.50695 * 109.46800 * 300.00161 * 9 7 2 24 24 C 1.34517 * 125.78965 * 264.71278 * 23 9 7 25 25 C 1.41380 * 106.84089 * 179.89500 * 24 23 9 26 26 C 1.34521 * 106.84150 * 0.37301 * 25 24 23 27 27 O 1.34303 * 108.41934 * 359.77026 * 26 25 24 28 28 H 0.97002 * 120.00794 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46801 * 299.72165 * 14 12 11 30 30 H 1.09000 * 109.47461 * 59.71633 * 14 12 11 31 31 H 1.09004 * 109.47066 * 299.99799 * 15 14 12 32 32 H 1.08994 * 109.47405 * 59.99969 * 15 14 12 33 33 H 1.07998 * 119.98634 * 359.97438 * 17 16 15 34 34 H 1.07997 * 120.00856 * 180.25236 * 18 17 16 35 35 H 1.08002 * 120.01586 * 179.97438 * 21 19 18 36 36 H 1.08003 * 119.98705 * 179.97438 * 22 21 19 37 37 H 1.07994 * 126.57709 * 0.02671 * 24 23 9 38 38 H 1.07999 * 126.58310 * 180.16516 * 25 24 23 39 39 H 1.07999 * 125.78767 * 179.75452 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 1.9593 -3.3277 -0.0015 11 8 0.4158 -2.5758 -1.1858 12 6 0.9620 -3.1258 -2.2817 13 8 2.1005 -3.5294 -2.2516 14 6 0.1576 -3.2337 -3.5514 15 6 1.0100 -3.8868 -4.6413 16 6 0.2057 -3.9941 -5.9112 17 6 -0.5508 -5.1250 -6.1561 18 6 -1.2932 -5.2222 -7.3177 19 6 -1.2697 -4.1914 -8.2418 20 9 -1.9901 -4.2881 -9.3807 21 6 -0.5072 -3.0617 -7.9982 22 6 0.2291 -2.9640 -6.8328 23 6 0.3851 -2.5792 1.2302 24 6 0.7153 -3.1820 2.3865 25 6 -0.3812 -3.0149 3.2632 26 6 -1.3192 -2.3271 2.5875 27 8 -0.8496 -2.0659 1.3567 28 1 -0.4851 0.8400 -0.0004 29 1 -0.7283 -3.8423 -3.3696 30 1 -0.1458 -2.2381 -3.8752 31 1 1.8959 -3.2783 -4.8231 32 1 1.3133 -4.8824 -4.3176 33 1 -0.5648 -5.9311 -5.4375 34 1 -1.8873 -6.1040 -7.5069 35 1 -0.4879 -2.2572 -8.7185 36 1 0.8243 -2.0830 -6.6427 37 1 1.6412 -3.6935 2.6041 38 1 -0.4534 -3.3737 4.2793 39 1 -2.2860 -2.0347 2.9698 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350311731.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:46 Heat of formation + Delta-G solvation = -97.196740 kcal Electronic energy + Delta-G solvation = -25434.272836 eV Core-core repulsion = 21416.126287 eV Total energy + Delta-G solvation = -4018.146549 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.01602 -41.32737 -39.59566 -38.95774 -35.63726 -33.70596 -32.95436 -31.84949 -31.27867 -30.06426 -29.24649 -26.56193 -24.84534 -23.19300 -23.04767 -21.35748 -20.65633 -19.65587 -19.41704 -17.80026 -17.17255 -16.63717 -16.53749 -16.36866 -15.71470 -15.50178 -15.17815 -14.95981 -14.79512 -14.46143 -14.08912 -13.81701 -13.60233 -13.37547 -13.00023 -12.76231 -12.46255 -11.93274 -11.84523 -11.73361 -11.58611 -11.40186 -11.28258 -11.25581 -11.05252 -10.98702 -10.77987 -10.41505 -9.84904 -9.53853 -9.25761 -9.09519 -8.84610 -8.78364 -8.64018 -7.35736 -6.24307 -4.46640 0.98995 1.08579 2.89699 3.19061 3.23637 3.24335 3.28614 3.39824 3.57922 3.90563 4.12682 4.23302 4.25145 4.57137 4.70983 4.80592 5.08680 5.10068 5.13867 5.25107 5.38494 5.60113 5.73540 5.78144 5.90993 5.93106 5.96495 5.97711 6.01270 6.09939 6.26884 6.36942 6.45858 6.49010 6.75705 6.79291 6.88494 7.19097 7.47078 7.60106 7.77128 7.80188 8.39477 8.56382 8.96063 9.27422 10.74695 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.015344 B = 0.003054 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.375497 B = 9165.750195 C =10057.782479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.081 3.919 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.550 4.550 8 H 0.073 0.927 9 C 0.279 3.721 10 H 0.071 0.929 11 O -0.335 6.335 12 C 0.458 3.542 13 O -0.533 6.533 14 C -0.110 4.110 15 C -0.069 4.069 16 C -0.084 4.084 17 C -0.087 4.087 18 C -0.152 4.152 19 C 0.087 3.913 20 F -0.144 7.144 21 C -0.152 4.152 22 C -0.086 4.086 23 C 0.082 3.918 24 C -0.265 4.265 25 C -0.221 4.221 26 C -0.082 4.082 27 O -0.117 6.117 28 H 0.268 0.732 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.130 0.870 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.863 -6.979 -9.683 12.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.130 4.130 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.586 4.586 8 H 0.092 0.908 9 C 0.227 3.773 10 H 0.089 0.911 11 O -0.250 6.250 12 C 0.302 3.698 13 O -0.425 6.425 14 C -0.148 4.148 15 C -0.106 4.106 16 C -0.084 4.084 17 C -0.105 4.105 18 C -0.171 4.171 19 C 0.068 3.932 20 F -0.123 7.123 21 C -0.170 4.170 22 C -0.104 4.104 23 C 0.028 3.972 24 C -0.284 4.284 25 C -0.241 4.241 26 C -0.151 4.151 27 O -0.009 6.009 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.119 0.881 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.151 0.849 38 H 0.148 0.852 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -3.919 -6.808 -9.884 12.626 hybrid contribution 0.363 0.983 0.243 1.076 sum -3.555 -5.826 -9.641 11.812 Atomic orbital electron populations 1.70035 1.05733 1.27440 1.42738 1.25154 0.94987 0.99745 0.93094 0.86570 0.79813 0.82154 0.79145 1.19734 1.20848 1.19740 1.21213 0.93414 0.89311 1.54645 0.90845 1.18772 0.84726 0.98193 0.75600 0.91141 1.86729 1.47508 1.70231 1.20514 1.23158 0.86209 0.74095 0.86346 1.90549 1.19429 1.47443 1.85037 1.21291 0.98934 1.03934 0.90647 1.20414 0.97210 1.02990 0.90004 1.20046 0.97844 0.94070 0.96488 1.20990 0.95289 0.97946 0.96299 1.21127 1.02278 0.98946 0.94768 1.17734 0.95181 0.96425 0.83879 1.91486 1.76029 1.96499 1.48288 1.21146 0.98850 0.97611 0.99428 1.21026 0.98088 0.98753 0.92515 1.22829 0.83700 0.92964 0.97700 1.21166 1.01475 1.11068 0.94723 1.21501 0.95419 1.06628 1.00538 1.23790 1.00447 1.04935 0.85933 1.84412 1.27699 1.59133 1.29631 0.92204 0.88568 0.88145 0.89697 0.89887 0.84800 0.84869 0.84834 0.84691 0.84945 0.85156 0.80022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.41 10.64 55.43 0.59 -21.82 16 2 C 0.08 2.15 5.24 -17.82 -0.09 2.06 16 3 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.55 -14.88 8.90 -34.44 -0.31 -15.19 16 8 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 9 C 0.28 7.10 2.58 -29.03 -0.07 7.02 16 10 H 0.07 1.75 7.15 -51.93 -0.37 1.38 16 11 O -0.33 -8.18 9.25 -42.05 -0.39 -8.57 16 12 C 0.46 9.59 7.92 36.00 0.29 9.88 16 13 O -0.53 -12.11 15.20 -18.76 -0.29 -12.40 16 14 C -0.11 -1.67 5.79 -27.89 -0.16 -1.83 16 15 C -0.07 -0.88 4.63 -27.88 -0.13 -1.01 16 16 C -0.08 -0.94 5.13 -104.61 -0.54 -1.48 16 17 C -0.09 -0.89 9.70 -39.59 -0.38 -1.27 16 18 C -0.15 -1.53 10.03 -39.52 -0.40 -1.92 16 19 C 0.09 0.96 7.30 -39.42 -0.29 0.67 16 20 F -0.14 -1.67 17.27 2.25 0.04 -1.63 16 21 C -0.15 -1.57 10.03 -39.52 -0.40 -1.97 16 22 C -0.09 -0.91 9.70 -39.59 -0.38 -1.30 16 23 C 0.08 2.01 5.58 -35.63 -0.20 1.81 16 24 C -0.27 -5.82 10.81 -39.70 -0.43 -6.25 16 25 C -0.22 -4.34 10.91 -39.70 -0.43 -4.78 16 26 C -0.08 -1.65 12.09 29.42 0.36 -1.29 16 27 O -0.12 -2.87 8.89 2.01 0.02 -2.85 16 28 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.08 1.14 8.04 -51.93 -0.42 0.72 16 32 H 0.08 1.05 8.04 -51.93 -0.42 0.63 16 33 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 34 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 35 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 37 H 0.13 2.64 8.06 -52.49 -0.42 2.21 16 38 H 0.13 2.11 8.06 -52.49 -0.42 1.68 16 39 H 0.18 2.86 8.06 -52.49 -0.42 2.44 16 LS Contribution 350.50 15.07 5.28 5.28 Total: -1.00 -30.89 350.50 -7.90 -38.79 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -4.56 Total: 4.59 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -3.57 Total: -16.86 kcal Atomic # 7 Polarization: -22.41 SS G_CDS: 0.59 Total: -21.82 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.66 Total: -23.82 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.89 -7.90 -38.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350311731.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.409 kcal (2) G-P(sol) polarization free energy of solvation -30.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds