Wall clock time and date at job start Tue Mar 31 2020 12:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 119.99845 * 2 1 4 4 H 1.48499 * 109.47152 * 240.00049 * 3 2 1 5 5 H 1.48493 * 109.47089 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46816 * 120.00406 * 3 2 1 7 7 C 1.37877 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00450 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99861 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47135 * 179.97438 * 9 7 2 11 11 O 1.45202 * 109.46761 * 59.99936 * 9 7 2 12 12 C 1.34230 * 116.99836 * 90.00637 * 11 9 7 13 13 O 1.20833 * 119.99930 * 359.97438 * 12 11 9 14 14 C 1.50697 * 120.00262 * 180.27336 * 12 11 9 15 15 C 1.52996 * 109.47491 * 179.72204 * 14 12 11 16 16 C 1.50702 * 109.47159 * 180.02562 * 15 14 12 17 17 C 1.38248 * 119.97325 * 269.72484 * 16 15 14 18 18 C 1.38199 * 120.02295 * 179.72816 * 17 16 15 19 19 C 1.38452 * 119.97404 * 0.56721 * 18 17 16 20 20 F 1.35105 * 120.02307 * 179.68620 * 19 18 17 21 21 C 1.38460 * 119.95323 * 359.70704 * 19 18 17 22 22 C 1.38194 * 119.96934 * 359.97438 * 21 19 18 23 23 C 1.50695 * 109.46800 * 300.00161 * 9 7 2 24 24 C 1.34517 * 125.78965 * 264.71278 * 23 9 7 25 25 C 1.41380 * 106.84089 * 179.89500 * 24 23 9 26 26 C 1.34521 * 106.84150 * 0.37301 * 25 24 23 27 27 O 1.34303 * 108.41934 * 359.77026 * 26 25 24 28 28 H 0.97002 * 120.00794 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46801 * 299.72165 * 14 12 11 30 30 H 1.09000 * 109.47461 * 59.71633 * 14 12 11 31 31 H 1.09004 * 109.47066 * 299.99799 * 15 14 12 32 32 H 1.08994 * 109.47405 * 59.99969 * 15 14 12 33 33 H 1.07998 * 119.98634 * 359.97438 * 17 16 15 34 34 H 1.07997 * 120.00856 * 180.25236 * 18 17 16 35 35 H 1.08002 * 120.01586 * 179.97438 * 21 19 18 36 36 H 1.08003 * 119.98705 * 179.97438 * 22 21 19 37 37 H 1.07994 * 126.57709 * 0.02671 * 24 23 9 38 38 H 1.07999 * 126.58310 * 180.16516 * 25 24 23 39 39 H 1.07999 * 125.78767 * 179.75452 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 1.9593 -3.3277 -0.0015 11 8 0.4158 -2.5758 -1.1858 12 6 0.9620 -3.1258 -2.2817 13 8 2.1005 -3.5294 -2.2516 14 6 0.1576 -3.2337 -3.5514 15 6 1.0100 -3.8868 -4.6413 16 6 0.2057 -3.9941 -5.9112 17 6 -0.5508 -5.1250 -6.1561 18 6 -1.2932 -5.2222 -7.3177 19 6 -1.2697 -4.1914 -8.2418 20 9 -1.9901 -4.2881 -9.3807 21 6 -0.5072 -3.0617 -7.9982 22 6 0.2291 -2.9640 -6.8328 23 6 0.3851 -2.5792 1.2302 24 6 0.7153 -3.1820 2.3865 25 6 -0.3812 -3.0149 3.2632 26 6 -1.3192 -2.3271 2.5875 27 8 -0.8496 -2.0659 1.3567 28 1 -0.4851 0.8400 -0.0004 29 1 -0.7283 -3.8423 -3.3696 30 1 -0.1458 -2.2381 -3.8752 31 1 1.8959 -3.2783 -4.8231 32 1 1.3133 -4.8824 -4.3176 33 1 -0.5648 -5.9311 -5.4375 34 1 -1.8873 -6.1040 -7.5069 35 1 -0.4879 -2.2572 -8.7185 36 1 0.8243 -2.0830 -6.6427 37 1 1.6412 -3.6935 2.6041 38 1 -0.4534 -3.3737 4.2793 39 1 -2.2860 -2.0347 2.9698 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350311731.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:45 Heat of formation + Delta-G solvation = -111.513406 kcal Electronic energy + Delta-G solvation = -25434.893653 eV Core-core repulsion = 21416.126287 eV Total energy + Delta-G solvation = -4018.767366 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.87400 -43.02719 -41.06935 -40.05126 -37.39636 -34.94676 -34.80869 -33.55315 -32.06288 -31.75738 -30.40146 -28.37505 -26.14307 -24.74791 -23.98219 -22.52796 -22.14811 -21.24700 -21.08620 -19.01420 -18.61767 -18.27441 -18.05026 -17.47366 -17.06005 -16.74771 -16.56706 -16.46572 -16.24079 -16.13422 -15.12857 -14.98127 -14.77635 -14.46717 -14.37753 -13.97383 -13.85054 -13.51823 -13.41449 -13.32964 -13.05222 -12.91928 -12.81818 -12.66410 -12.42220 -12.21904 -12.16752 -11.81751 -11.77898 -11.27411 -10.95817 -10.77691 -10.48305 -10.03887 -9.52361 -9.06714 -8.21359 -6.52133 0.14082 0.30455 1.20134 1.38302 1.40114 1.47039 1.57141 1.92749 2.25423 2.34001 2.60790 2.65278 3.09624 3.31552 3.73866 3.78309 3.99899 4.01371 4.12975 4.20138 4.37368 4.38338 4.41772 4.45068 4.50914 4.59826 4.76273 4.87924 5.03488 5.05142 5.14849 5.18488 5.19523 5.24777 5.30275 5.45129 5.57994 5.62287 5.81170 5.91123 5.94890 6.05038 6.52432 6.72895 7.15881 7.28817 8.76065 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.015344 B = 0.003054 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.375497 B = 9165.750195 C =10057.782479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.044 3.956 3 Si 0.954 3.046 4 H -0.271 1.271 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.579 4.579 8 H 0.060 0.940 9 C 0.279 3.721 10 H 0.058 0.942 11 O -0.352 6.352 12 C 0.448 3.552 13 O -0.557 6.557 14 C -0.098 4.098 15 C -0.058 4.058 16 C -0.092 4.092 17 C -0.087 4.087 18 C -0.152 4.152 19 C 0.074 3.926 20 F -0.150 7.150 21 C -0.155 4.155 22 C -0.092 4.092 23 C 0.042 3.958 24 C -0.266 4.266 25 C -0.220 4.220 26 C -0.082 4.082 27 O -0.146 6.146 28 H 0.269 0.731 29 H 0.118 0.882 30 H 0.106 0.894 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.149 0.851 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.170 0.830 39 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.914 -7.046 -9.552 12.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.165 4.165 3 Si 0.778 3.222 4 H -0.196 1.196 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.615 4.615 8 H 0.078 0.922 9 C 0.226 3.774 10 H 0.076 0.924 11 O -0.267 6.267 12 C 0.293 3.707 13 O -0.450 6.450 14 C -0.136 4.136 15 C -0.095 4.095 16 C -0.093 4.093 17 C -0.105 4.105 18 C -0.171 4.171 19 C 0.055 3.945 20 F -0.129 7.129 21 C -0.173 4.173 22 C -0.110 4.110 23 C -0.011 4.011 24 C -0.286 4.286 25 C -0.239 4.239 26 C -0.150 4.150 27 O -0.039 6.039 28 H 0.078 0.922 29 H 0.136 0.864 30 H 0.124 0.876 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.170 0.830 34 H 0.171 0.829 35 H 0.167 0.833 36 H 0.161 0.839 37 H 0.162 0.838 38 H 0.187 0.813 39 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -4.969 -6.887 -9.762 12.940 hybrid contribution 0.659 0.903 0.218 1.139 sum -4.310 -5.984 -9.545 12.062 Atomic orbital electron populations 1.70143 1.06611 1.27959 1.43126 1.25769 0.95790 1.02297 0.92618 0.85685 0.78773 0.78712 0.79016 1.19568 1.19804 1.19590 1.21373 0.93079 0.90883 1.56136 0.92177 1.18592 0.85235 0.97009 0.76552 0.92383 1.86702 1.47636 1.71125 1.21265 1.24290 0.86506 0.72889 0.86967 1.90522 1.20733 1.48323 1.85379 1.21386 0.99127 1.04995 0.88070 1.20278 0.96693 1.02518 0.90042 1.19921 0.98441 0.95004 0.95886 1.21192 0.94621 0.97972 0.96678 1.21356 1.02104 0.99344 0.94277 1.17983 0.95477 0.97074 0.84015 1.91472 1.76199 1.96559 1.48619 1.21324 0.98439 0.97972 0.99586 1.21169 0.98235 0.98996 0.92561 1.22768 0.84595 0.95518 0.98211 1.21553 1.02580 1.09991 0.94441 1.21910 0.94015 1.06071 1.01879 1.24715 1.02006 1.03878 0.84434 1.84349 1.27797 1.59881 1.31840 0.92202 0.86369 0.87585 0.90703 0.89752 0.83036 0.82935 0.83343 0.83896 0.83752 0.81293 0.75903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.28 10.64 21.45 0.23 -46.05 16 2 C 0.04 2.36 5.24 84.66 0.44 2.80 16 3 Si 0.95 42.31 29.54 68.60 2.03 44.34 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.58 -32.33 8.90 25.60 0.23 -32.10 16 8 H 0.06 3.38 7.81 -2.91 -0.02 3.36 16 9 C 0.28 14.69 2.58 29.10 0.08 14.77 16 10 H 0.06 3.06 7.15 -2.39 -0.02 3.04 16 11 O -0.35 -17.71 9.25 -48.74 -0.45 -18.16 16 12 C 0.45 19.19 7.92 71.23 0.56 19.75 16 13 O -0.56 -26.14 15.20 21.94 0.33 -25.81 16 14 C -0.10 -2.93 5.79 29.85 0.17 -2.76 16 15 C -0.06 -1.45 4.63 29.85 0.14 -1.31 16 16 C -0.09 -1.94 5.13 -19.86 -0.10 -2.04 16 17 C -0.09 -1.59 9.70 22.26 0.22 -1.37 16 18 C -0.15 -2.75 10.03 22.31 0.22 -2.52 16 19 C 0.07 1.51 7.30 22.37 0.16 1.67 16 20 F -0.15 -3.28 17.27 44.97 0.78 -2.50 16 21 C -0.15 -2.98 10.03 22.31 0.22 -2.76 16 22 C -0.09 -1.84 9.70 22.26 0.22 -1.62 16 23 C 0.04 2.09 5.58 24.83 0.14 2.23 16 24 C -0.27 -11.58 10.81 22.19 0.24 -11.34 16 25 C -0.22 -8.11 10.91 22.19 0.24 -7.86 16 26 C -0.08 -3.15 12.09 66.97 0.81 -2.34 16 27 O -0.15 -7.13 8.89 0.99 0.01 -7.12 16 28 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 29 H 0.12 3.02 8.14 -2.38 -0.02 3.00 16 30 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 31 H 0.07 2.01 8.04 -2.38 -0.02 2.00 16 32 H 0.08 2.08 8.04 -2.39 -0.02 2.06 16 33 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 34 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 35 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 36 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 37 H 0.14 5.72 8.06 -2.91 -0.02 5.69 16 38 H 0.17 4.79 8.06 -2.91 -0.02 4.77 16 39 H 0.22 6.26 8.06 -2.91 -0.02 6.24 16 Total: -1.00 -67.79 350.50 7.98 -59.80 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: 1.07 Total: 22.31 kcal Atomic # 6 Polarization: -30.81 SS G_CDS: 3.99 Total: -26.82 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: 0.23 Total: -46.05 kcal Atomic # 8 Polarization: -50.98 SS G_CDS: -0.11 Total: -51.09 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.78 Total: -2.50 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -67.79 7.98 -59.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350311731.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.710 kcal (2) G-P(sol) polarization free energy of solvation -67.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds