Wall clock time and date at job start Tue Mar 31 2020 12:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99806 * 2 1 4 4 H 1.48497 * 109.46597 * 239.99469 * 3 2 1 5 5 H 1.48501 * 109.47032 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47229 * 119.99441 * 3 2 1 7 7 C 1.37870 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99810 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00124 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47471 * 59.99650 * 9 7 2 11 11 O 1.45205 * 109.47457 * 179.97438 * 9 7 2 12 12 C 1.34228 * 117.00187 * 209.99952 * 11 9 7 13 13 O 1.20820 * 120.00153 * 359.97438 * 12 11 9 14 14 C 1.50696 * 119.99885 * 179.97438 * 12 11 9 15 15 C 1.53000 * 109.47110 * 180.02562 * 14 12 11 16 16 C 1.50706 * 109.47116 * 179.97438 * 15 14 12 17 17 C 1.38244 * 119.97491 * 269.72533 * 16 15 14 18 18 C 1.38201 * 120.02142 * 179.72306 * 17 16 15 19 19 C 1.38459 * 119.97601 * 0.57371 * 18 17 16 20 20 F 1.35094 * 120.02797 * 179.67746 * 19 18 17 21 21 C 1.38461 * 119.94519 * 359.70287 * 19 18 17 22 22 C 1.38193 * 119.98059 * 359.97438 * 21 19 18 23 23 C 1.50703 * 109.47012 * 299.99528 * 9 7 2 24 24 C 1.34511 * 125.78925 * 100.00312 * 23 9 7 25 25 C 1.41384 * 106.84464 * 180.02562 * 24 23 9 26 26 C 1.34517 * 106.83598 * 359.97438 * 25 24 23 27 27 O 1.34303 * 125.78824 * 279.69261 * 23 9 7 28 28 H 0.97004 * 120.00320 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47543 * 59.99651 * 14 12 11 30 30 H 1.09008 * 109.47338 * 300.00164 * 14 12 11 31 31 H 1.09000 * 109.46884 * 60.00335 * 15 14 12 32 32 H 1.09000 * 109.46955 * 299.99651 * 15 14 12 33 33 H 1.08000 * 119.98716 * 359.97438 * 17 16 15 34 34 H 1.07996 * 120.01399 * 180.25476 * 18 17 16 35 35 H 1.08009 * 120.01051 * 179.97438 * 21 19 18 36 36 H 1.07999 * 119.99486 * 179.97438 * 22 21 19 37 37 H 1.07997 * 126.58155 * 0.03078 * 24 23 9 38 38 H 1.07996 * 126.58563 * 179.97438 * 25 24 23 39 39 H 1.08003 * 125.78958 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6247 -2.5570 -0.8896 11 8 2.1946 -3.6028 0.0005 12 6 1.8034 -4.7390 -0.5974 13 8 0.7086 -4.8093 -1.1037 14 6 2.7296 -5.9270 -0.6373 15 6 2.0460 -7.0823 -1.3714 16 6 2.9725 -8.2702 -1.4118 17 6 3.8478 -8.4278 -2.4702 18 6 4.7019 -9.5137 -2.5055 19 6 4.6724 -10.4503 -1.4862 20 9 5.5023 -11.5157 -1.5228 21 6 3.7913 -10.2944 -0.4295 22 6 2.9428 -9.2042 -0.3930 23 6 0.3843 -2.5787 1.2308 24 6 -0.9359 -2.3256 1.2806 25 6 -1.3399 -2.5196 2.6215 26 6 -0.2424 -2.8802 3.3108 27 8 0.7978 -2.9200 2.4621 28 1 -0.4851 0.8401 -0.0004 29 1 2.9704 -6.2344 0.3803 30 1 3.6462 -5.6558 -1.1613 31 1 1.8057 -6.7746 -2.3891 32 1 1.1293 -7.3537 -0.8477 33 1 3.8669 -7.6998 -3.2678 34 1 5.3884 -9.6344 -3.3303 35 1 3.7672 -11.0246 0.3660 36 1 2.2552 -9.0826 0.4309 37 1 -1.5663 -2.0309 0.4548 38 1 -2.3379 -2.4011 3.0167 39 1 -0.2050 -3.1044 4.3666 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350311732.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:48 Heat of formation + Delta-G solvation = -101.443931 kcal Electronic energy + Delta-G solvation = -25284.697932 eV Core-core repulsion = 21266.367211 eV Total energy + Delta-G solvation = -4018.330721 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.09447 -41.37327 -39.82988 -39.17977 -35.94221 -33.89942 -33.29060 -31.73553 -31.36870 -30.05805 -29.24610 -26.70885 -24.97701 -23.28515 -22.97272 -21.48180 -20.64956 -20.09418 -19.26282 -17.88689 -17.31498 -16.76639 -16.65389 -16.52655 -15.79609 -15.65624 -15.43203 -15.18975 -14.75592 -14.46595 -14.18547 -14.04007 -13.72625 -13.36872 -13.14500 -12.74204 -12.65928 -12.03846 -11.87107 -11.77860 -11.61445 -11.59069 -11.36021 -11.24000 -11.15298 -10.98142 -10.94287 -10.41175 -10.13408 -9.75354 -9.43615 -9.34725 -8.84580 -8.75200 -8.67052 -7.28531 -6.23782 -4.41986 0.89304 0.99578 2.83982 2.87662 3.21236 3.24116 3.25924 3.30765 3.55646 3.92583 4.04307 4.16311 4.25352 4.47975 4.62031 4.70873 4.97671 5.00148 5.04582 5.07553 5.23963 5.46862 5.63289 5.70047 5.80631 5.82648 5.84963 5.88834 6.00171 6.04572 6.11498 6.34492 6.37088 6.66130 6.69608 6.95940 7.12180 7.20444 7.36638 7.66784 7.67708 7.83543 8.32653 8.48455 8.75337 9.25077 10.74981 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.018583 B = 0.002764 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.364972 B =10126.473019 C =11001.945070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.070 3.930 3 Si 0.914 3.086 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.533 4.533 8 H 0.077 0.923 9 C 0.298 3.702 10 H 0.079 0.921 11 O -0.349 6.349 12 C 0.452 3.548 13 O -0.517 6.517 14 C -0.110 4.110 15 C -0.070 4.070 16 C -0.087 4.087 17 C -0.086 4.086 18 C -0.152 4.152 19 C 0.089 3.911 20 F -0.143 7.143 21 C -0.152 4.152 22 C -0.086 4.086 23 C 0.026 3.974 24 C -0.179 4.179 25 C -0.218 4.218 26 C -0.089 4.089 27 O -0.177 6.177 28 H 0.269 0.731 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.141 0.859 38 H 0.131 0.869 39 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.156 -15.815 -1.042 16.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.740 3.260 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.570 4.570 8 H 0.095 0.905 9 C 0.245 3.755 10 H 0.096 0.904 11 O -0.265 6.265 12 C 0.295 3.705 13 O -0.407 6.407 14 C -0.147 4.147 15 C -0.107 4.107 16 C -0.087 4.087 17 C -0.104 4.104 18 C -0.171 4.171 19 C 0.070 3.930 20 F -0.122 7.122 21 C -0.171 4.171 22 C -0.104 4.104 23 C -0.025 4.025 24 C -0.198 4.198 25 C -0.237 4.237 26 C -0.156 4.156 27 O -0.074 6.074 28 H 0.079 0.921 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.159 0.841 38 H 0.149 0.851 39 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 4.969 -15.769 -1.113 16.571 hybrid contribution 0.073 0.957 0.264 0.995 sum 5.042 -14.812 -0.849 15.670 Atomic orbital electron populations 1.70022 1.05916 1.27806 1.46470 1.24945 0.95138 0.99561 0.93987 0.86289 0.79351 0.81293 0.79025 1.19702 1.20929 1.19835 1.20857 0.94122 0.87625 1.54371 0.90478 1.19170 0.85700 0.81837 0.88796 0.90378 1.86552 1.48438 1.22097 1.69425 1.23454 0.86772 0.85083 0.75164 1.90619 1.22772 1.83427 1.43861 1.21311 0.98654 0.90920 1.03852 1.20423 0.96909 0.90654 1.02750 1.19999 0.97431 0.96619 0.94633 1.21008 0.94216 0.96918 0.98240 1.21149 1.01744 0.95154 0.99019 1.17745 0.92220 0.86021 0.97048 1.91489 1.70085 1.54084 1.96556 1.21148 0.97212 1.00195 0.98515 1.21007 0.98111 0.92897 0.98385 1.23548 0.94141 1.00181 0.84602 1.21209 0.94802 1.06970 0.96826 1.21696 0.98917 1.07978 0.95125 1.23607 0.86119 1.10295 0.95592 1.83991 1.36712 1.68448 1.18218 0.92082 0.88013 0.87901 0.89605 0.89679 0.84688 0.84779 0.84793 0.84738 0.84139 0.85136 0.79884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.75 10.95 55.43 0.61 -23.15 16 2 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 3 Si 0.91 20.68 29.54 -169.99 -5.02 15.65 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.53 -14.52 8.89 -34.45 -0.31 -14.83 16 8 H 0.08 2.06 7.81 -52.48 -0.41 1.65 16 9 C 0.30 7.76 2.42 -29.04 -0.07 7.69 16 10 H 0.08 2.17 7.15 -51.93 -0.37 1.80 16 11 O -0.35 -7.99 9.85 -41.32 -0.41 -8.40 16 12 C 0.45 8.73 7.92 36.00 0.29 9.02 16 13 O -0.52 -11.26 15.20 -18.75 -0.28 -11.54 16 14 C -0.11 -1.43 5.79 -27.89 -0.16 -1.60 16 15 C -0.07 -0.80 4.63 -27.88 -0.13 -0.92 16 16 C -0.09 -0.86 5.13 -104.61 -0.54 -1.39 16 17 C -0.09 -0.78 9.70 -39.59 -0.38 -1.17 16 18 C -0.15 -1.38 10.03 -39.51 -0.40 -1.78 16 19 C 0.09 0.89 7.30 -39.42 -0.29 0.60 16 20 F -0.14 -1.54 17.27 2.25 0.04 -1.50 16 21 C -0.15 -1.39 10.03 -39.52 -0.40 -1.79 16 22 C -0.09 -0.79 9.70 -39.59 -0.38 -1.18 16 23 C 0.03 0.67 5.53 -35.62 -0.20 0.48 16 24 C -0.18 -4.39 9.17 -39.70 -0.36 -4.76 16 25 C -0.22 -4.60 10.91 -39.70 -0.43 -5.03 16 26 C -0.09 -1.80 12.09 29.42 0.36 -1.45 16 27 O -0.18 -4.29 10.65 4.36 0.05 -4.25 16 28 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.10 1.17 8.14 -51.92 -0.42 0.75 16 31 H 0.09 0.99 8.04 -51.93 -0.42 0.58 16 32 H 0.08 1.01 8.04 -51.93 -0.42 0.59 16 33 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 34 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 35 H 0.13 0.99 8.06 -52.48 -0.42 0.56 16 36 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.14 3.54 7.87 -52.49 -0.41 3.13 16 38 H 0.13 2.33 8.06 -52.49 -0.42 1.90 16 39 H 0.18 2.80 8.06 -52.48 -0.42 2.38 16 LS Contribution 351.17 15.07 5.29 5.29 Total: -1.00 -31.18 351.17 -7.78 -38.96 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -4.55 Total: 5.27 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: -3.50 Total: -16.33 kcal Atomic # 7 Polarization: -23.75 SS G_CDS: 0.61 Total: -23.15 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.65 Total: -24.19 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.18 -7.78 -38.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350311732.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.487 kcal (2) G-P(sol) polarization free energy of solvation -31.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds