Wall clock time and date at job start Tue Mar 31 2020 12:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99806 * 2 1 4 4 H 1.48497 * 109.46597 * 239.99469 * 3 2 1 5 5 H 1.48501 * 109.47032 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47229 * 119.99441 * 3 2 1 7 7 C 1.37870 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99810 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00124 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47471 * 59.99650 * 9 7 2 11 11 O 1.45205 * 109.47457 * 179.97438 * 9 7 2 12 12 C 1.34228 * 117.00187 * 209.99952 * 11 9 7 13 13 O 1.20820 * 120.00153 * 359.97438 * 12 11 9 14 14 C 1.50696 * 119.99885 * 179.97438 * 12 11 9 15 15 C 1.53000 * 109.47110 * 180.02562 * 14 12 11 16 16 C 1.50706 * 109.47116 * 179.97438 * 15 14 12 17 17 C 1.38244 * 119.97491 * 269.72533 * 16 15 14 18 18 C 1.38201 * 120.02142 * 179.72306 * 17 16 15 19 19 C 1.38459 * 119.97601 * 0.57371 * 18 17 16 20 20 F 1.35094 * 120.02797 * 179.67746 * 19 18 17 21 21 C 1.38461 * 119.94519 * 359.70287 * 19 18 17 22 22 C 1.38193 * 119.98059 * 359.97438 * 21 19 18 23 23 C 1.50703 * 109.47012 * 299.99528 * 9 7 2 24 24 C 1.34511 * 125.78925 * 100.00312 * 23 9 7 25 25 C 1.41384 * 106.84464 * 180.02562 * 24 23 9 26 26 C 1.34517 * 106.83598 * 359.97438 * 25 24 23 27 27 O 1.34303 * 125.78824 * 279.69261 * 23 9 7 28 28 H 0.97004 * 120.00320 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47543 * 59.99651 * 14 12 11 30 30 H 1.09008 * 109.47338 * 300.00164 * 14 12 11 31 31 H 1.09000 * 109.46884 * 60.00335 * 15 14 12 32 32 H 1.09000 * 109.46955 * 299.99651 * 15 14 12 33 33 H 1.08000 * 119.98716 * 359.97438 * 17 16 15 34 34 H 1.07996 * 120.01399 * 180.25476 * 18 17 16 35 35 H 1.08009 * 120.01051 * 179.97438 * 21 19 18 36 36 H 1.07999 * 119.99486 * 179.97438 * 22 21 19 37 37 H 1.07997 * 126.58155 * 0.03078 * 24 23 9 38 38 H 1.07996 * 126.58563 * 179.97438 * 25 24 23 39 39 H 1.08003 * 125.78958 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6247 -2.5570 -0.8896 11 8 2.1946 -3.6028 0.0005 12 6 1.8034 -4.7390 -0.5974 13 8 0.7086 -4.8093 -1.1037 14 6 2.7296 -5.9270 -0.6373 15 6 2.0460 -7.0823 -1.3714 16 6 2.9725 -8.2702 -1.4118 17 6 3.8478 -8.4278 -2.4702 18 6 4.7019 -9.5137 -2.5055 19 6 4.6724 -10.4503 -1.4862 20 9 5.5023 -11.5157 -1.5228 21 6 3.7913 -10.2944 -0.4295 22 6 2.9428 -9.2042 -0.3930 23 6 0.3843 -2.5787 1.2308 24 6 -0.9359 -2.3256 1.2806 25 6 -1.3399 -2.5196 2.6215 26 6 -0.2424 -2.8802 3.3108 27 8 0.7978 -2.9200 2.4621 28 1 -0.4851 0.8401 -0.0004 29 1 2.9704 -6.2344 0.3803 30 1 3.6462 -5.6558 -1.1613 31 1 1.8057 -6.7746 -2.3891 32 1 1.1293 -7.3537 -0.8477 33 1 3.8669 -7.6998 -3.2678 34 1 5.3884 -9.6344 -3.3303 35 1 3.7672 -11.0246 0.3660 36 1 2.2552 -9.0826 0.4309 37 1 -1.5663 -2.0309 0.4548 38 1 -2.3379 -2.4011 3.0167 39 1 -0.2050 -3.1044 4.3666 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350311732.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:48 Heat of formation + Delta-G solvation = -116.591777 kcal Electronic energy + Delta-G solvation = -25285.354792 eV Core-core repulsion = 21266.367211 eV Total energy + Delta-G solvation = -4018.987581 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.87126 -43.16909 -41.31198 -40.07995 -37.63903 -35.28754 -34.89955 -33.54152 -32.05671 -31.70782 -30.41919 -28.57187 -26.18366 -24.70838 -23.97786 -22.59888 -22.27501 -21.58534 -20.96042 -19.09296 -18.64873 -18.46709 -18.20114 -17.50652 -17.21429 -16.89706 -16.61282 -16.53503 -16.31896 -16.09739 -15.28065 -14.95385 -14.69583 -14.57232 -14.39517 -14.10901 -13.84899 -13.60685 -13.48629 -13.43683 -13.16659 -13.03985 -12.79859 -12.68344 -12.45025 -12.21332 -12.19257 -12.00798 -11.78488 -11.40705 -11.32145 -10.79695 -10.51374 -10.03275 -9.52578 -9.11292 -8.23665 -6.52428 0.13955 0.31083 1.10608 1.32418 1.40224 1.44351 1.51268 1.89637 2.13033 2.40315 2.43240 2.64946 3.01624 3.32389 3.67112 3.78342 3.93773 4.00424 4.10699 4.14754 4.30861 4.38668 4.40580 4.44301 4.55418 4.60581 4.73158 4.86029 5.02882 5.04982 5.16064 5.17957 5.19568 5.30352 5.33338 5.43527 5.46605 5.61546 5.69083 5.84605 5.95118 5.99116 6.48943 6.59226 6.94156 7.20014 8.72929 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.018583 B = 0.002764 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.364972 B =10126.473019 C =11001.945070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.024 3.976 3 Si 0.979 3.021 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.558 4.558 8 H 0.074 0.926 9 C 0.301 3.699 10 H 0.043 0.957 11 O -0.360 6.360 12 C 0.445 3.555 13 O -0.548 6.548 14 C -0.097 4.097 15 C -0.061 4.061 16 C -0.092 4.092 17 C -0.088 4.088 18 C -0.154 4.154 19 C 0.074 3.926 20 F -0.150 7.150 21 C -0.154 4.154 22 C -0.088 4.088 23 C -0.003 4.003 24 C -0.194 4.194 25 C -0.228 4.228 26 C -0.070 4.070 27 O -0.194 6.194 28 H 0.270 0.730 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.148 0.852 37 H 0.121 0.879 38 H 0.165 0.835 39 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.067 -16.298 0.309 17.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.179 4.179 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.595 4.595 8 H 0.093 0.907 9 C 0.247 3.753 10 H 0.061 0.939 11 O -0.277 6.277 12 C 0.290 3.710 13 O -0.439 6.439 14 C -0.134 4.134 15 C -0.099 4.099 16 C -0.093 4.093 17 C -0.105 4.105 18 C -0.172 4.172 19 C 0.055 3.945 20 F -0.129 7.129 21 C -0.173 4.173 22 C -0.106 4.106 23 C -0.054 4.054 24 C -0.213 4.213 25 C -0.247 4.247 26 C -0.136 4.136 27 O -0.091 6.091 28 H 0.079 0.921 29 H 0.140 0.860 30 H 0.143 0.857 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.167 0.833 34 H 0.168 0.832 35 H 0.168 0.832 36 H 0.166 0.834 37 H 0.139 0.861 38 H 0.183 0.817 39 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 5.886 -16.278 0.229 17.311 hybrid contribution -0.266 1.003 -0.141 1.047 sum 5.620 -15.276 0.088 16.277 Atomic orbital electron populations 1.70156 1.07198 1.28526 1.46698 1.25821 0.96023 1.02792 0.93264 0.85285 0.78190 0.76952 0.79342 1.18627 1.20288 1.19456 1.21143 0.94197 0.88864 1.55308 0.90744 1.18712 0.85665 0.82767 0.88140 0.93944 1.86540 1.48002 1.22765 1.70360 1.24725 0.87386 0.85245 0.73657 1.90598 1.24546 1.83737 1.45003 1.21473 0.97879 0.88357 1.05679 1.20305 0.96910 0.90585 1.02055 1.19875 0.97618 0.96282 0.95484 1.21191 0.93776 0.97216 0.98363 1.21349 1.01864 0.94755 0.99275 1.18009 0.92573 0.86181 0.97785 1.91471 1.70355 1.54453 1.96637 1.21343 0.96740 1.00444 0.98730 1.21181 0.98226 0.92636 0.98579 1.23341 0.94441 1.02358 0.85216 1.21281 0.94651 1.07136 0.98252 1.22046 1.01044 1.08214 0.93431 1.24679 0.84610 1.07192 0.97129 1.83963 1.38243 1.68833 1.18095 0.92050 0.86017 0.85668 0.90120 0.90378 0.83262 0.83192 0.83220 0.83414 0.86093 0.81739 0.74389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.10 10.95 21.44 0.23 -49.86 16 2 C 0.02 1.32 5.30 84.65 0.45 1.77 16 3 Si 0.98 42.51 29.54 68.60 2.03 44.54 16 4 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 5 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.56 -31.36 8.89 25.60 0.23 -31.13 16 8 H 0.07 4.08 7.81 -2.91 -0.02 4.05 16 9 C 0.30 16.38 2.42 29.10 0.07 16.45 16 10 H 0.04 2.55 7.15 -2.39 -0.02 2.54 16 11 O -0.36 -17.02 9.85 -49.42 -0.49 -17.50 16 12 C 0.44 17.56 7.92 71.23 0.56 18.13 16 13 O -0.55 -24.91 15.20 21.98 0.33 -24.57 16 14 C -0.10 -2.43 5.79 29.85 0.17 -2.25 16 15 C -0.06 -1.33 4.63 29.85 0.14 -1.20 16 16 C -0.09 -1.67 5.13 -19.86 -0.10 -1.77 16 17 C -0.09 -1.44 9.70 22.26 0.22 -1.22 16 18 C -0.15 -2.53 10.03 22.31 0.22 -2.30 16 19 C 0.07 1.36 7.30 22.38 0.16 1.52 16 20 F -0.15 -3.05 17.27 44.97 0.78 -2.27 16 21 C -0.15 -2.54 10.03 22.31 0.22 -2.32 16 22 C -0.09 -1.46 9.70 22.26 0.22 -1.25 16 23 C 0.00 -0.16 5.53 24.83 0.14 -0.02 16 24 C -0.19 -9.74 9.17 22.19 0.20 -9.54 16 25 C -0.23 -9.31 10.91 22.19 0.24 -9.06 16 26 C -0.07 -2.65 12.09 66.97 0.81 -1.84 16 27 O -0.19 -9.31 10.65 -1.27 -0.01 -9.32 16 28 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 29 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.13 2.63 8.14 -2.38 -0.02 2.61 16 31 H 0.08 1.84 8.04 -2.39 -0.02 1.82 16 32 H 0.08 1.81 8.04 -2.39 -0.02 1.79 16 33 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 34 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 35 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 36 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 37 H 0.12 6.44 7.87 -2.91 -0.02 6.41 16 38 H 0.17 5.42 8.06 -2.91 -0.02 5.39 16 39 H 0.24 6.09 8.06 -2.91 -0.02 6.06 16 Total: -1.00 -70.27 351.17 7.90 -62.37 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 1.07 Total: 22.67 kcal Atomic # 6 Polarization: -30.00 SS G_CDS: 3.96 Total: -26.05 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: 0.23 Total: -49.86 kcal Atomic # 8 Polarization: -51.23 SS G_CDS: -0.17 Total: -51.40 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.78 Total: -2.27 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -70.27 7.90 -62.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350311732.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.220 kcal (2) G-P(sol) polarization free energy of solvation -70.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds