Wall clock time and date at job start Tue Mar 31 2020 11:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42895 * 109.46902 * 2 1 4 4 C 1.35732 * 116.99953 * 179.97438 * 3 2 1 5 5 C 1.41839 * 126.78769 * 179.97438 * 4 3 2 6 6 C 1.36685 * 103.81319 * 179.97438 * 5 4 3 7 7 C 1.47496 * 126.88270 * 180.02562 * 6 5 4 8 8 O 1.21590 * 120.00049 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99880 * 180.02562 * 7 6 5 10 10 C 1.39810 * 119.99954 * 175.50133 * 9 7 6 11 11 C 1.38995 * 120.03983 * 215.15675 * 10 9 7 12 12 C 1.38148 * 120.06325 * 179.97438 * 11 10 9 13 13 C 1.38179 * 120.14213 * 359.74325 * 12 11 10 14 14 C 1.38907 * 120.07496 * 0.51336 * 13 12 11 15 15 O 1.35751 * 120.03005 * 179.76779 * 14 13 12 16 16 C 1.34827 * 117.00209 * 354.34184 * 15 14 13 17 17 H 1.08008 * 119.99860 * 5.02539 * 16 15 14 18 18 C 1.38657 * 120.00322 * 185.02472 * 16 15 14 19 19 N 1.31553 * 120.00139 * 180.02562 * 18 16 15 20 20 Si 1.86792 * 119.99699 * 0.02562 * 18 16 15 21 21 H 1.48508 * 109.47016 * 89.99985 * 20 18 16 22 22 H 1.48501 * 109.47006 * 209.99800 * 20 18 16 23 23 H 1.48500 * 109.47602 * 330.00194 * 20 18 16 24 24 C 1.38740 * 120.04010 * 35.13414 * 10 9 7 25 25 O 1.34661 * 106.23683 * 0.26672 * 6 5 4 26 26 N 1.20876 * 111.62861 * 359.52185 * 25 6 5 27 27 H 1.09004 * 109.46994 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47125 * 299.99948 * 1 2 3 29 29 H 1.09000 * 109.47403 * 60.00082 * 1 2 3 30 30 H 1.08990 * 109.47055 * 239.99808 * 2 1 3 31 31 H 1.09000 * 109.46879 * 119.99907 * 2 1 3 32 32 H 1.08004 * 128.09354 * 359.94367 * 5 4 3 33 33 H 0.96994 * 120.00146 * 355.50311 * 9 7 6 34 34 H 1.08003 * 119.96553 * 359.95982 * 11 10 9 35 35 H 1.08003 * 119.92916 * 180.02562 * 12 11 10 36 36 H 1.08002 * 119.95596 * 180.27213 * 13 12 11 37 37 H 0.96996 * 119.99971 * 180.02562 * 19 18 16 38 38 H 1.08002 * 120.07204 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3519 1.5251 0.0005 5 6 4.0451 2.7626 0.0001 6 6 5.3626 2.3986 0.0016 7 6 6.5300 3.3000 0.0024 8 8 6.3677 4.5050 0.0013 9 7 7.7768 2.7880 0.0033 10 6 8.8820 3.6390 -0.0909 11 6 10.0137 3.2350 -0.7895 12 6 11.1059 4.0757 -0.8833 13 6 11.0752 5.3223 -0.2880 14 6 9.9493 5.7299 0.4161 15 8 9.9219 6.9529 1.0046 16 6 11.0598 7.6751 0.9687 17 1 11.9139 7.3101 0.4174 18 6 11.1337 8.8864 1.6395 19 7 12.2438 9.5913 1.6041 20 14 9.6568 9.5172 2.5934 21 1 9.7226 9.0220 3.9920 22 1 9.6649 11.0022 2.5933 23 1 8.4088 9.0289 1.9537 24 6 8.8504 4.8880 0.5124 25 8 5.3812 1.0521 -0.0033 26 7 4.2639 0.5911 0.0020 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.6292 3.7593 -0.0015 33 1 7.9072 1.8291 0.0693 34 1 10.0393 2.2628 -1.2592 35 1 11.9840 3.7597 -1.4270 36 1 11.9291 5.9788 -0.3670 37 1 12.2956 10.4384 2.0736 38 1 7.9723 5.2044 1.0559 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361464460.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:42 Heat of formation + Delta-G solvation = 6.146279 kcal Electronic energy + Delta-G solvation = -24938.267460 eV Core-core repulsion = 20944.522162 eV Total energy + Delta-G solvation = -3993.745297 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.31495 -40.41139 -39.39814 -38.84142 -36.81903 -34.49943 -33.82651 -32.40651 -32.33332 -31.57460 -29.75200 -28.75566 -25.39929 -24.97354 -23.83411 -23.56483 -22.22931 -21.35158 -20.78671 -19.26170 -18.31673 -18.17752 -17.53688 -17.28676 -16.38090 -16.21257 -15.88863 -15.31677 -15.16636 -15.03920 -14.65321 -14.17229 -13.93412 -13.80839 -13.71191 -13.53385 -13.17253 -12.92067 -12.48640 -12.37534 -12.30722 -11.77886 -11.69674 -11.61010 -11.31427 -11.06438 -10.86941 -10.40891 -10.19873 -10.12050 -9.91875 -9.69329 -9.36536 -8.87792 -7.93477 -7.38458 -6.42117 -4.08793 0.41210 1.71529 1.91351 2.17060 2.19925 2.28889 2.84921 3.09361 3.24967 3.28195 3.45381 3.71772 4.25633 4.31741 4.40653 4.41716 4.49294 4.57277 4.73502 4.82396 4.89908 5.09934 5.13210 5.26667 5.36689 5.50663 5.52514 5.65347 5.92759 6.03431 6.18261 6.34351 6.56042 6.63941 6.82455 7.04602 7.25705 7.31992 7.47562 7.69387 7.78015 7.88558 8.02408 8.93076 9.55094 10.65036 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.020561 B = 0.002563 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.502297 B =10920.211634 C =12165.956162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.280 6.280 4 C 0.209 3.791 5 C -0.151 4.151 6 C -0.053 4.053 7 C 0.599 3.401 8 O -0.478 6.478 9 N -0.649 5.649 10 C 0.167 3.833 11 C -0.220 4.220 12 C -0.059 4.059 13 C -0.227 4.227 14 C 0.172 3.828 15 O -0.211 6.211 16 C -0.389 4.389 17 H 0.108 0.892 18 C 0.064 3.936 19 N -0.877 5.877 20 Si 0.903 3.097 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.257 1.257 24 C -0.186 4.186 25 O 0.116 5.884 26 N -0.390 5.390 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.192 0.808 33 H 0.415 0.585 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.136 0.864 37 H 0.280 0.720 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.919 -19.748 -3.607 26.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.187 6.187 4 C 0.011 3.989 5 C -0.174 4.174 6 C -0.119 4.119 7 C 0.382 3.618 8 O -0.350 6.350 9 N -0.294 5.294 10 C 0.074 3.926 11 C -0.241 4.241 12 C -0.078 4.078 13 C -0.247 4.247 14 C 0.119 3.881 15 O -0.116 6.116 16 C -0.465 4.465 17 H 0.125 0.875 18 C -0.139 4.139 19 N -0.515 5.515 20 Si 0.728 3.272 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.181 1.181 24 C -0.207 4.207 25 O 0.050 5.950 26 N -0.114 5.114 27 H 0.101 0.899 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.210 0.790 33 H 0.251 0.749 34 H 0.132 0.868 35 H 0.135 0.865 36 H 0.153 0.847 37 H 0.090 0.910 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.448 -19.655 -3.423 26.504 hybrid contribution -0.550 0.393 0.380 0.776 sum -17.998 -19.262 -3.042 26.537 Atomic orbital electron populations 1.21806 0.92022 1.03294 1.03807 1.22861 0.96037 0.80405 1.02508 1.86236 1.12844 1.30400 1.89193 1.21818 0.85916 0.90400 1.00717 1.22221 0.89998 0.99468 1.05698 1.24008 0.96468 0.84208 1.07222 1.16506 0.80940 0.86260 0.78088 1.90976 1.84276 1.12511 1.47261 1.43118 1.03998 1.10863 1.71421 1.17087 0.86321 0.90915 0.98240 1.20361 0.94794 1.01776 1.07203 1.20581 0.96851 0.93093 0.97269 1.21344 1.00391 0.98283 1.04683 1.18836 0.92710 0.85132 0.91421 1.83585 1.37156 1.23231 1.67618 1.20784 0.90044 1.02066 1.33580 0.87463 1.24462 0.97752 0.95093 0.96609 1.69640 1.25717 1.14235 1.41894 0.86207 0.82985 0.77637 0.80328 1.19855 1.20751 1.18093 1.20159 0.99699 0.93911 1.06909 1.84944 1.22932 1.18532 1.68624 1.73990 0.90407 1.22061 1.24979 0.89870 0.91253 0.91255 0.91467 0.91458 0.79041 0.74906 0.86825 0.86507 0.84678 0.91008 0.84735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 10.28 37.16 0.38 -0.36 16 2 C 0.06 0.41 6.38 37.16 0.24 0.65 16 3 O -0.28 -2.85 10.21 -18.90 -0.19 -3.04 16 4 C 0.21 2.33 8.00 -16.72 -0.13 2.20 16 5 C -0.15 -1.68 10.97 -38.77 -0.43 -2.10 16 6 C -0.05 -0.61 7.28 -36.37 -0.26 -0.88 16 7 C 0.60 8.38 7.66 -12.49 -0.10 8.28 16 8 O -0.48 -8.53 14.35 5.29 0.08 -8.46 16 9 N -0.65 -8.42 5.33 -10.84 -0.06 -8.48 16 10 C 0.17 2.79 6.29 -83.75 -0.53 2.26 16 11 C -0.22 -3.40 9.96 -39.33 -0.39 -3.79 16 12 C -0.06 -1.00 10.03 -39.64 -0.40 -1.40 16 13 C -0.23 -4.75 9.16 -39.36 -0.36 -5.11 16 14 C 0.17 3.99 6.64 -39.14 -0.26 3.73 16 15 O -0.21 -5.63 8.58 0.05 0.00 -5.63 16 16 C -0.39 -10.92 9.95 30.89 0.31 -10.61 16 17 H 0.11 3.03 5.43 -52.48 -0.29 2.75 16 18 C 0.06 1.81 5.49 -17.52 -0.10 1.71 16 19 N -0.88 -25.21 13.96 55.48 0.77 -24.43 16 20 Si 0.90 21.90 28.62 -169.99 -4.86 17.04 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.26 -6.36 7.11 56.52 0.40 -5.95 16 24 C -0.19 -3.82 8.63 -39.20 -0.34 -4.16 16 25 O 0.12 1.25 11.03 15.50 0.17 1.42 16 26 N -0.39 -4.43 11.50 30.47 0.35 -4.08 16 27 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.19 1.87 8.06 -52.48 -0.42 1.45 16 33 H 0.41 3.83 8.65 -40.82 -0.35 3.48 16 34 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 35 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 36 H 0.14 2.95 5.63 -52.49 -0.30 2.65 16 37 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.13 2.88 6.23 -52.49 -0.33 2.55 16 LS Contribution 340.78 15.07 5.14 5.14 Total: -1.00 -31.68 340.78 -4.75 -36.43 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -3.78 Total: 3.68 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -2.37 Total: -9.58 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 1.07 Total: -36.99 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: 0.05 Total: -15.71 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.86 Total: 17.04 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.68 -4.75 -36.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361464460.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.574 kcal (2) G-P(sol) polarization free energy of solvation -31.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds