Wall clock time and date at job start Tue Mar 31 2020 12:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31292 * 1 3 3 Si 1.86802 * 119.99798 * 2 1 4 4 H 1.48504 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46908 * 299.99508 * 3 2 1 6 6 H 1.48494 * 109.47314 * 59.99682 * 3 2 1 7 7 C 1.38987 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99913 * 180.02562 * 7 2 1 9 9 N 1.37315 * 120.00100 * 0.02562 * 7 2 1 10 10 C 1.36496 * 126.06669 * 180.28610 * 9 7 2 11 11 C 1.35698 * 107.50504 * 180.12747 * 10 9 7 12 12 N 1.40538 * 126.08686 * 179.87666 * 11 10 9 13 13 C 1.34772 * 119.99989 * 179.71345 * 12 11 10 14 14 O 1.21611 * 120.00250 * 359.97438 * 13 12 11 15 15 C 1.47512 * 119.99886 * 180.02562 * 13 12 11 16 16 C 1.39998 * 120.59616 * 0.02562 * 15 13 12 17 17 C 1.38336 * 118.34498 * 180.30000 * 16 15 13 18 18 C 1.38354 * 119.45935 * 359.42498 * 17 16 15 19 19 N 1.31877 * 121.18647 * 0.59227 * 18 17 16 20 20 C 1.32231 * 121.80519 * 359.71291 * 19 18 17 21 21 O 1.35426 * 119.80649 * 180.02562 * 20 19 18 22 22 C 1.42904 * 116.99761 * 359.97189 * 21 20 19 23 23 C 1.52998 * 109.46961 * 180.02562 * 22 21 20 24 24 O 1.42898 * 109.47492 * 65.00317 * 23 22 21 25 25 C 1.40664 * 107.82770 * 359.61150 * 11 10 9 26 26 N 1.30898 * 108.39021 * 0.24282 * 25 11 10 27 27 H 0.97001 * 120.00145 * 0.02562 * 1 2 3 28 28 H 1.07996 * 126.25059 * 359.97438 * 10 9 7 29 29 H 0.97007 * 119.99607 * 359.71535 * 12 11 10 30 30 H 1.08002 * 120.82381 * 0.02562 * 16 15 13 31 31 H 1.08001 * 120.26855 * 179.72022 * 17 16 15 32 32 H 1.08002 * 119.40716 * 180.31953 * 18 17 16 33 33 H 1.08997 * 109.46957 * 300.00396 * 22 21 20 34 34 H 1.08996 * 109.46946 * 60.00194 * 22 21 20 35 35 H 1.09004 * 109.47041 * 185.00027 * 23 22 21 36 36 H 1.09000 * 109.47310 * 304.99546 * 23 22 21 37 37 H 0.96704 * 114.00115 * 180.02562 * 24 23 22 38 38 H 1.08002 * 125.80515 * 180.22151 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.7069 1.3465 0.0006 5 1 1.8882 2.3964 -1.2125 6 1 1.8881 2.3965 1.2124 7 6 2.0079 -1.2037 0.0005 8 1 3.0879 -1.2036 0.0010 9 7 1.3213 -2.3929 0.0005 10 6 1.8750 -3.6404 0.0065 11 6 0.8578 -4.5385 0.0013 12 7 0.9889 -5.9378 0.0023 13 6 -0.1103 -6.7176 0.0024 14 8 -1.2156 -6.2105 0.0022 15 6 0.0274 -8.1863 0.0040 16 6 1.2937 -8.7833 0.0060 17 6 1.3686 -10.1646 0.0010 18 6 0.2025 -10.9093 0.0065 19 7 -0.9802 -10.3260 0.0047 20 6 -1.1083 -9.0100 0.0032 21 8 -2.3430 -8.4537 0.0019 22 6 -3.4575 -9.3483 0.0016 23 6 -4.7581 -8.5425 -0.0006 24 8 -4.8620 -7.8089 -1.2225 25 6 -0.3513 -3.8197 0.0009 26 7 -0.0715 -2.5410 0.0005 27 1 -0.4850 0.8400 -0.0004 28 1 2.9301 -3.8708 0.0117 29 1 1.8706 -6.3423 0.0029 30 1 2.1897 -8.1804 0.0067 31 1 2.3294 -10.6577 -0.0022 32 1 0.2620 -11.9877 0.0079 33 1 -3.4184 -9.9770 -0.8879 34 1 -3.4199 -9.9758 0.8920 35 1 -5.6062 -9.2214 0.0887 36 1 -4.7575 -7.8493 0.8406 37 1 -5.6643 -7.2735 -1.2928 38 1 -1.3420 -4.2497 0.0007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362163425.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:27 Heat of formation + Delta-G solvation = 11.967037 kcal Electronic energy + Delta-G solvation = -25644.030925 eV Core-core repulsion = 21682.830786 eV Total energy + Delta-G solvation = -3961.200139 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.89432 -39.67161 -38.36959 -38.03607 -36.49077 -34.16359 -33.30090 -32.47371 -31.20177 -30.17578 -29.43378 -27.66778 -25.17839 -24.43125 -23.57894 -22.20862 -21.09039 -20.50836 -19.35117 -18.64834 -17.69713 -17.60007 -17.10953 -16.69144 -15.94593 -15.45337 -15.31519 -14.88175 -14.68473 -14.42540 -14.38455 -14.12983 -13.75515 -13.36506 -13.09765 -12.96472 -12.84476 -12.78431 -12.37191 -11.65339 -11.47227 -11.35557 -11.25466 -11.06716 -10.89142 -10.48631 -10.19037 -10.17174 -9.96785 -9.93471 -9.12132 -9.06300 -8.75124 -8.57572 -8.00107 -6.62911 -6.51891 -4.18012 0.65896 1.13313 2.93599 2.94528 3.07274 3.12173 3.13278 3.56850 3.61915 3.89131 3.95881 4.14045 4.16451 4.53716 4.59462 4.71669 4.81536 4.89317 4.94048 5.06128 5.09537 5.10731 5.24403 5.43324 5.47728 5.63233 5.72669 5.91296 6.19717 6.28958 6.52097 6.94833 7.02123 7.18423 7.23502 7.29960 7.58838 7.65408 7.90807 8.25117 8.33613 8.69447 8.94601 9.42832 9.72544 10.44189 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.018165 B = 0.003044 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.027397 B = 9197.584353 C =10663.433711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.046 3.954 3 Si 0.934 3.066 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.323 4.323 8 H 0.116 0.884 9 N -0.144 5.144 10 C -0.084 4.084 11 C -0.056 4.056 12 N -0.621 5.621 13 C 0.544 3.456 14 O -0.506 6.506 15 C -0.192 4.192 16 C -0.014 4.014 17 C -0.222 4.222 18 C 0.157 3.843 19 N -0.549 5.549 20 C 0.371 3.629 21 O -0.255 6.255 22 C 0.066 3.934 23 C 0.078 3.922 24 O -0.562 6.562 25 C -0.031 4.031 26 N -0.260 5.260 27 H 0.274 0.726 28 H 0.145 0.855 29 H 0.393 0.607 30 H 0.144 0.856 31 H 0.141 0.859 32 H 0.161 0.839 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.380 0.620 38 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.262 -19.766 0.948 19.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.455 4.455 8 H 0.134 0.866 9 N 0.089 4.911 10 C -0.235 4.235 11 C -0.162 4.162 12 N -0.265 5.265 13 C 0.329 3.671 14 O -0.382 6.382 15 C -0.199 4.199 16 C -0.041 4.041 17 C -0.242 4.242 18 C 0.000 4.000 19 N -0.274 5.274 20 C 0.191 3.809 21 O -0.159 6.159 22 C -0.010 4.010 23 C 0.000 4.000 24 O -0.368 6.368 25 C -0.206 4.206 26 N -0.091 5.091 27 H 0.084 0.916 28 H 0.163 0.837 29 H 0.226 0.774 30 H 0.162 0.838 31 H 0.159 0.841 32 H 0.179 0.821 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.227 0.773 38 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -2.061 -18.531 0.831 18.663 hybrid contribution 1.541 0.011 0.153 1.548 sum -0.521 -18.519 0.984 18.553 Atomic orbital electron populations 1.70231 1.06109 1.27798 1.35491 1.25639 0.95697 1.00236 0.95556 0.85771 0.79612 0.80347 0.78438 1.18723 1.19941 1.19957 1.19903 0.91650 0.80566 1.53383 0.86621 1.44548 1.04068 1.03268 1.39265 1.21234 0.96753 0.85401 1.20160 1.17245 0.94377 0.81046 1.23514 1.42357 1.07811 1.04546 1.71760 1.17558 0.84877 0.84977 0.79658 1.90746 1.25078 1.73776 1.48552 1.20176 0.92089 0.94820 1.12799 1.21677 0.96106 0.95196 0.91074 1.21878 1.00332 0.94176 1.07853 1.22573 0.86440 1.00295 0.90716 1.67463 1.29206 1.09919 1.20773 1.19842 0.85963 0.87194 0.87939 1.86638 1.10552 1.33410 1.85283 1.22753 0.83631 0.91892 1.02736 1.22197 0.94751 0.95031 0.88061 1.86597 1.47409 1.64581 1.38178 1.24148 0.98133 0.90659 1.07689 1.78249 0.90081 1.15100 1.25684 0.91560 0.83736 0.77362 0.83811 0.84074 0.82135 0.90974 0.90299 0.91735 0.92264 0.77257 0.80606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.82 11.81 55.49 0.66 -21.16 16 2 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 3 Si 0.93 19.14 29.55 -169.99 -5.02 14.12 16 4 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.32 -8.66 10.25 -14.82 -0.15 -8.81 16 8 H 0.12 2.77 7.83 -52.49 -0.41 2.36 16 9 N -0.14 -4.02 3.74 -11.41 -0.04 -4.06 16 10 C -0.08 -2.03 11.49 -16.38 -0.19 -2.22 16 11 C -0.06 -1.34 6.90 -83.86 -0.58 -1.92 16 12 N -0.62 -11.68 5.42 -10.94 -0.06 -11.74 16 13 C 0.54 10.65 7.74 -12.48 -0.10 10.55 16 14 O -0.51 -11.92 12.34 -16.50 -0.20 -12.12 16 15 C -0.19 -2.98 5.90 -104.69 -0.62 -3.60 16 16 C -0.01 -0.16 9.64 -38.89 -0.37 -0.53 16 17 C -0.22 -1.92 10.09 -39.50 -0.40 -2.32 16 18 C 0.16 1.48 11.17 -17.49 -0.20 1.29 16 19 N -0.55 -7.10 9.21 -12.98 -0.12 -7.22 16 20 C 0.37 5.83 7.51 -16.61 -0.12 5.71 16 21 O -0.26 -4.38 8.18 -43.72 -0.36 -4.74 16 22 C 0.07 0.83 5.69 37.16 0.21 1.05 16 23 C 0.08 0.86 7.43 37.16 0.28 1.14 16 24 O -0.56 -7.53 13.62 -40.08 -0.55 -8.07 16 25 C -0.03 -0.84 10.85 -17.03 -0.18 -1.02 16 26 N -0.26 -7.75 10.39 30.80 0.32 -7.43 16 27 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.15 2.86 8.06 -52.49 -0.42 2.44 16 29 H 0.39 5.59 6.93 -40.82 -0.28 5.31 16 30 H 0.14 1.18 6.51 -52.49 -0.34 0.84 16 31 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 32 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 34 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.38 3.22 9.12 45.56 0.42 3.63 16 38 H 0.18 4.83 5.91 -52.49 -0.31 4.52 16 LS Contribution 337.01 15.07 5.08 5.08 Total: -1.00 -38.29 337.01 -5.84 -44.13 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -3.02 Total: 12.81 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -2.52 Total: 0.41 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: 0.75 Total: -51.61 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -1.11 Total: -24.93 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.12 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -38.29 -5.84 -44.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362163425.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.094 kcal (2) G-P(sol) polarization free energy of solvation -38.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds