Wall clock time and date at job start Tue Mar 31 2020 12:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31292 * 1 3 3 Si 1.86802 * 119.99798 * 2 1 4 4 H 1.48504 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46908 * 299.99508 * 3 2 1 6 6 H 1.48494 * 109.47314 * 59.99682 * 3 2 1 7 7 C 1.38987 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99913 * 180.02562 * 7 2 1 9 9 N 1.37315 * 120.00100 * 0.02562 * 7 2 1 10 10 C 1.36496 * 126.06669 * 180.28610 * 9 7 2 11 11 C 1.35698 * 107.50504 * 180.12747 * 10 9 7 12 12 N 1.40538 * 126.08686 * 179.87666 * 11 10 9 13 13 C 1.34772 * 119.99989 * 179.71345 * 12 11 10 14 14 O 1.21611 * 120.00250 * 359.97438 * 13 12 11 15 15 C 1.47512 * 119.99886 * 180.02562 * 13 12 11 16 16 C 1.39998 * 120.59616 * 0.02562 * 15 13 12 17 17 C 1.38336 * 118.34498 * 180.30000 * 16 15 13 18 18 C 1.38354 * 119.45935 * 359.42498 * 17 16 15 19 19 N 1.31877 * 121.18647 * 0.59227 * 18 17 16 20 20 C 1.32231 * 121.80519 * 359.71291 * 19 18 17 21 21 O 1.35426 * 119.80649 * 180.02562 * 20 19 18 22 22 C 1.42904 * 116.99761 * 359.97189 * 21 20 19 23 23 C 1.52998 * 109.46961 * 180.02562 * 22 21 20 24 24 O 1.42898 * 109.47492 * 65.00317 * 23 22 21 25 25 C 1.40664 * 107.82770 * 359.61150 * 11 10 9 26 26 N 1.30898 * 108.39021 * 0.24282 * 25 11 10 27 27 H 0.97001 * 120.00145 * 0.02562 * 1 2 3 28 28 H 1.07996 * 126.25059 * 359.97438 * 10 9 7 29 29 H 0.97007 * 119.99607 * 359.71535 * 12 11 10 30 30 H 1.08002 * 120.82381 * 0.02562 * 16 15 13 31 31 H 1.08001 * 120.26855 * 179.72022 * 17 16 15 32 32 H 1.08002 * 119.40716 * 180.31953 * 18 17 16 33 33 H 1.08997 * 109.46957 * 300.00396 * 22 21 20 34 34 H 1.08996 * 109.46946 * 60.00194 * 22 21 20 35 35 H 1.09004 * 109.47041 * 185.00027 * 23 22 21 36 36 H 1.09000 * 109.47310 * 304.99546 * 23 22 21 37 37 H 0.96704 * 114.00115 * 180.02562 * 24 23 22 38 38 H 1.08002 * 125.80515 * 180.22151 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.7069 1.3465 0.0006 5 1 1.8882 2.3964 -1.2125 6 1 1.8881 2.3965 1.2124 7 6 2.0079 -1.2037 0.0005 8 1 3.0879 -1.2036 0.0010 9 7 1.3213 -2.3929 0.0005 10 6 1.8750 -3.6404 0.0065 11 6 0.8578 -4.5385 0.0013 12 7 0.9889 -5.9378 0.0023 13 6 -0.1103 -6.7176 0.0024 14 8 -1.2156 -6.2105 0.0022 15 6 0.0274 -8.1863 0.0040 16 6 1.2937 -8.7833 0.0060 17 6 1.3686 -10.1646 0.0010 18 6 0.2025 -10.9093 0.0065 19 7 -0.9802 -10.3260 0.0047 20 6 -1.1083 -9.0100 0.0032 21 8 -2.3430 -8.4537 0.0019 22 6 -3.4575 -9.3483 0.0016 23 6 -4.7581 -8.5425 -0.0006 24 8 -4.8620 -7.8089 -1.2225 25 6 -0.3513 -3.8197 0.0009 26 7 -0.0715 -2.5410 0.0005 27 1 -0.4850 0.8400 -0.0004 28 1 2.9301 -3.8708 0.0117 29 1 1.8706 -6.3423 0.0029 30 1 2.1897 -8.1804 0.0067 31 1 2.3294 -10.6577 -0.0022 32 1 0.2620 -11.9877 0.0079 33 1 -3.4184 -9.9770 -0.8879 34 1 -3.4199 -9.9758 0.8920 35 1 -5.6062 -9.2214 0.0887 36 1 -4.7575 -7.8493 0.8406 37 1 -5.6643 -7.2735 -1.2928 38 1 -1.3420 -4.2497 0.0007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362163425.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:26 Heat of formation + Delta-G solvation = -20.240329 kcal Electronic energy + Delta-G solvation = -25645.427542 eV Core-core repulsion = 21682.830786 eV Total energy + Delta-G solvation = -3962.596756 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -42.03413 -41.44537 -39.84918 -39.14994 -37.48132 -35.91814 -35.05315 -33.61316 -32.26678 -32.05872 -30.46956 -29.47366 -26.94695 -25.59316 -24.66669 -23.16801 -22.87248 -22.10654 -21.18933 -19.67222 -19.35894 -18.67275 -18.42426 -17.84139 -17.40772 -16.99660 -16.68728 -16.06539 -15.97590 -15.88809 -15.45486 -15.38774 -15.18123 -14.96683 -14.76549 -14.21332 -14.07281 -13.78102 -13.48982 -13.34750 -13.24050 -12.92683 -12.82633 -12.39025 -12.02080 -12.01563 -11.85919 -11.10643 -11.01731 -11.00312 -10.96508 -10.80291 -10.51214 -10.09076 -9.54528 -8.50158 -8.45747 -6.22888 -0.31075 0.26725 1.27205 1.40756 1.60232 1.66057 1.94108 1.99644 2.03956 2.26734 2.49697 2.89692 2.91131 3.10817 3.29363 3.30500 3.78607 3.80043 3.99100 4.03694 4.16499 4.23313 4.43249 4.44750 4.50991 4.59702 4.64542 4.72782 4.91925 5.01471 5.10564 5.12363 5.30137 5.45674 5.48312 5.97204 6.25721 6.32999 6.69122 6.74541 6.81311 6.84675 7.40843 7.48715 7.69108 8.54008 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.018165 B = 0.003044 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.027397 B = 9197.584353 C =10663.433711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C -0.009 4.009 3 Si 1.021 2.979 4 H -0.239 1.239 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.353 4.353 8 H 0.144 0.856 9 N -0.168 5.168 10 C -0.078 4.078 11 C -0.043 4.043 12 N -0.611 5.611 13 C 0.541 3.459 14 O -0.556 6.556 15 C -0.228 4.228 16 C -0.006 4.006 17 C -0.202 4.202 18 C 0.162 3.838 19 N -0.559 5.559 20 C 0.347 3.653 21 O -0.295 6.295 22 C 0.060 3.940 23 C 0.075 3.925 24 O -0.595 6.595 25 C -0.061 4.061 26 N -0.310 5.310 27 H 0.276 0.724 28 H 0.193 0.807 29 H 0.417 0.583 30 H 0.173 0.827 31 H 0.190 0.810 32 H 0.206 0.794 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.048 0.952 37 H 0.397 0.603 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.273 -22.292 1.104 22.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.220 4.220 3 Si 0.840 3.160 4 H -0.161 1.161 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.484 4.484 8 H 0.161 0.839 9 N 0.063 4.937 10 C -0.228 4.228 11 C -0.149 4.149 12 N -0.257 5.257 13 C 0.330 3.670 14 O -0.435 6.435 15 C -0.234 4.234 16 C -0.032 4.032 17 C -0.222 4.222 18 C 0.005 3.995 19 N -0.284 5.284 20 C 0.168 3.832 21 O -0.200 6.200 22 C -0.015 4.015 23 C -0.002 4.002 24 O -0.403 6.403 25 C -0.236 4.236 26 N -0.142 5.142 27 H 0.085 0.915 28 H 0.209 0.791 29 H 0.255 0.745 30 H 0.190 0.810 31 H 0.207 0.793 32 H 0.223 0.777 33 H 0.087 0.913 34 H 0.114 0.886 35 H 0.125 0.875 36 H 0.067 0.933 37 H 0.247 0.753 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.507 -21.123 0.988 21.200 hybrid contribution 0.458 0.479 0.105 0.671 sum 1.965 -20.645 1.094 20.767 Atomic orbital electron populations 1.70421 1.08531 1.29002 1.37447 1.26924 0.96471 1.04453 0.94148 0.84509 0.79104 0.74268 0.78119 1.16125 1.19869 1.19837 1.20693 0.93025 0.80803 1.53867 0.83919 1.44864 1.03574 1.04879 1.40381 1.21989 0.98771 0.84030 1.18057 1.17328 0.92942 0.83459 1.21200 1.42218 1.09265 1.02389 1.71850 1.18324 0.84050 0.86929 0.77712 1.90719 1.27085 1.75212 1.50497 1.19955 0.94356 0.91909 1.17215 1.22074 0.94943 0.96792 0.89367 1.22402 1.02090 0.92913 1.04751 1.23507 0.85676 1.02471 0.87827 1.67552 1.31166 1.08376 1.21310 1.20078 0.85602 0.88394 0.89134 1.86594 1.12054 1.35659 1.85722 1.22992 0.83217 0.91928 1.03312 1.22395 0.95617 0.95372 0.86807 1.86538 1.49040 1.65413 1.39352 1.24114 0.99004 0.91014 1.09441 1.78146 0.92138 1.16371 1.27537 0.91459 0.79057 0.74453 0.80980 0.79284 0.77741 0.91273 0.88573 0.87538 0.93322 0.75314 0.82112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.84 11.81 21.66 0.26 -48.58 16 2 C -0.01 -0.46 5.50 84.95 0.47 0.01 16 3 Si 1.02 39.14 29.55 68.60 2.03 41.17 16 4 H -0.24 -8.10 7.11 99.48 0.71 -7.39 16 5 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 6 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 7 C -0.35 -18.96 10.25 84.01 0.86 -18.10 16 8 H 0.14 6.59 7.83 -2.91 -0.02 6.56 16 9 N -0.17 -9.56 3.74 -190.01 -0.71 -10.27 16 10 C -0.08 -3.70 11.49 83.38 0.96 -2.74 16 11 C -0.04 -2.09 6.90 37.75 0.26 -1.83 16 12 N -0.61 -22.74 5.42 -306.79 -1.66 -24.40 16 13 C 0.54 21.81 7.74 86.69 0.67 22.48 16 14 O -0.56 -28.07 12.34 16.75 0.21 -27.87 16 15 C -0.23 -6.95 5.90 -19.91 -0.12 -7.07 16 16 C -0.01 -0.11 9.64 22.72 0.22 0.11 16 17 C -0.20 -2.43 10.09 22.32 0.23 -2.20 16 18 C 0.16 2.36 11.17 84.71 0.95 3.31 16 19 N -0.56 -13.45 9.21 -308.00 -2.84 -16.29 16 20 C 0.35 10.98 7.51 85.13 0.64 11.62 16 21 O -0.30 -10.71 8.18 -62.59 -0.51 -11.22 16 22 C 0.06 1.59 5.69 71.98 0.41 2.00 16 23 C 0.08 1.74 7.43 71.98 0.53 2.27 16 24 O -0.59 -16.89 13.62 -144.35 -1.97 -18.85 16 25 C -0.06 -3.52 10.85 85.42 0.93 -2.59 16 26 N -0.31 -19.45 10.39 -56.46 -0.59 -20.03 16 27 H 0.28 14.95 8.31 -92.71 -0.77 14.18 16 28 H 0.19 6.95 8.06 -2.91 -0.02 6.93 16 29 H 0.42 10.89 6.93 -92.70 -0.64 10.25 16 30 H 0.17 2.03 6.51 -2.91 -0.02 2.01 16 31 H 0.19 0.55 8.06 -2.91 -0.02 0.53 16 32 H 0.21 1.11 8.06 -2.91 -0.02 1.09 16 33 H 0.07 1.78 8.10 -2.39 -0.02 1.76 16 34 H 0.10 2.06 8.10 -2.39 -0.02 2.04 16 35 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 36 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.40 7.32 9.12 -74.05 -0.68 6.64 16 38 H 0.16 9.66 5.91 -2.91 -0.02 9.64 16 Total: -1.00 -92.46 337.01 1.04 -91.42 By element: Atomic # 1 Polarization: 37.84 SS G_CDS: -0.17 Total: 37.67 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 7.00 Total: 7.26 kcal Atomic # 7 Polarization: -114.04 SS G_CDS: -5.54 Total: -119.58 kcal Atomic # 8 Polarization: -55.66 SS G_CDS: -2.27 Total: -57.94 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 2.03 Total: 41.17 kcal Total: -92.46 1.04 -91.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362163425.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.175 kcal (2) G-P(sol) polarization free energy of solvation -92.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds