Wall clock time and date at job start Tue Mar 31 2020 12:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.34965 * 125.97869 * 124.71943 * 10 9 7 12 12 C 1.35238 * 107.86767 * 179.83904 * 11 10 9 13 13 C 1.40415 * 107.86263 * 0.42170 * 12 11 10 14 14 N 1.40104 * 125.97407 * 179.70315 * 13 12 11 15 15 C 1.34779 * 120.00146 * 0.02562 * 14 13 12 16 16 O 1.21619 * 119.99783 * 359.97438 * 15 14 13 17 17 C 1.47361 * 120.00276 * 180.02562 * 15 14 13 18 18 C 1.47021 * 127.19112 * 359.67892 * 17 15 14 19 19 C 1.34181 * 105.95733 * 179.86561 * 18 17 15 20 20 O 1.34217 * 109.12040 * 0.40622 * 19 18 17 21 21 C 1.33652 * 110.91153 * 359.72840 * 20 19 18 22 22 C 1.50700 * 125.80348 * 179.97438 * 21 20 19 23 23 C 1.50707 * 109.46973 * 270.02013 * 22 21 20 24 24 N 1.34771 * 120.00161 * 180.02562 * 23 22 21 25 25 O 1.21279 * 119.99825 * 0.02562 * 23 22 21 26 26 N 1.31227 * 108.05286 * 359.73806 * 13 12 11 27 27 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 29 29 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 30 30 H 1.08009 * 126.06816 * 359.97438 * 11 10 9 31 31 H 1.08001 * 126.07000 * 180.13470 * 12 11 10 32 32 H 0.97008 * 120.00442 * 180.02562 * 14 13 12 33 33 H 1.08007 * 127.02312 * 0.03203 * 18 17 15 34 34 H 1.08000 * 125.44134 * 180.09475 * 19 18 17 35 35 H 1.09002 * 109.47104 * 30.01601 * 22 21 20 36 36 H 1.08997 * 109.47594 * 150.02171 * 22 21 20 37 37 H 0.97003 * 120.00140 * 359.97438 * 24 23 22 38 38 H 0.96998 * 120.00189 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0181 11 6 4.8469 -3.1128 -0.9209 12 6 5.0539 -4.4044 -0.5778 13 6 4.2969 -4.6707 0.5745 14 7 4.2280 -5.8968 1.2488 15 6 4.9312 -6.9545 0.7978 16 8 5.6251 -6.8446 -0.1950 17 6 4.8583 -8.2443 1.5067 18 6 4.0805 -8.5510 2.7160 19 6 4.3208 -9.8420 2.9916 20 8 5.1693 -10.3363 2.0767 21 6 5.5032 -9.4016 1.1816 22 6 6.4344 -9.5934 0.0123 23 6 7.8448 -9.2725 0.4355 24 7 8.8542 -9.3739 -0.4518 25 8 8.0715 -8.9230 1.5745 26 7 3.6647 -3.5705 0.9089 27 1 -0.4850 0.8400 0.0004 28 1 3.8711 -0.6780 -0.9023 29 1 3.8785 -0.6824 0.8776 30 1 5.2838 -2.6015 -1.7661 31 1 5.6854 -5.1078 -1.1003 32 1 3.6743 -5.9846 2.0405 33 1 3.4433 -7.8758 3.2681 34 1 3.9026 -10.3938 3.8205 35 1 6.3834 -10.6280 -0.3269 36 1 6.1390 -8.9297 -0.8002 37 1 8.6729 -9.6538 -1.3627 38 1 9.7620 -9.1677 -0.1793 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362164435.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:07 Heat of formation + Delta-G solvation = -0.116114 kcal Electronic energy + Delta-G solvation = -25426.418310 eV Core-core repulsion = 21464.694206 eV Total energy + Delta-G solvation = -3961.724104 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.65146 -42.21140 -40.50306 -40.27489 -36.29839 -35.24382 -34.74073 -34.14153 -33.14964 -32.80289 -31.00182 -29.26489 -28.44816 -25.52527 -24.16724 -22.88053 -22.46284 -21.95961 -21.06267 -20.60755 -19.11726 -19.08366 -18.27851 -18.14157 -17.93444 -17.07722 -16.90352 -16.84069 -16.46313 -16.23158 -15.98073 -15.67810 -15.23831 -14.85455 -14.74752 -14.53776 -14.36163 -13.95442 -13.90390 -13.80370 -13.72162 -12.99970 -12.75157 -12.65711 -12.19861 -11.82472 -11.67501 -11.47200 -11.25090 -11.02253 -10.88921 -10.87386 -10.67043 -9.80429 -9.66514 -9.11289 -8.37815 -6.48289 0.10850 0.96942 1.18497 1.28565 1.38176 1.39993 1.49159 1.59247 1.75598 1.82205 2.28648 2.36266 2.39468 2.71287 2.94835 3.41259 3.52456 3.79558 3.94820 4.02595 4.18218 4.20596 4.38423 4.58535 4.59515 4.67092 4.81036 4.86787 4.89272 4.92896 5.12778 5.24046 5.32793 5.84621 5.87871 5.94376 5.99979 6.19828 6.40588 6.42446 6.57684 6.93376 7.02453 7.14711 7.31728 8.79320 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.023245 B = 0.002696 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.280086 B =10385.034745 C =11239.760702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.014 3.986 3 Si 0.956 3.044 4 H -0.267 1.267 5 H -0.229 1.229 6 H -0.277 1.277 7 C -0.547 4.547 8 H 0.026 0.974 9 C 0.239 3.761 10 N -0.343 5.343 11 C 0.062 3.938 12 C -0.292 4.292 13 C 0.264 3.736 14 N -0.621 5.621 15 C 0.598 3.402 16 O -0.539 6.539 17 C -0.252 4.252 18 C -0.207 4.207 19 C -0.015 4.015 20 O -0.172 6.172 21 C 0.092 3.908 22 C -0.072 4.072 23 C 0.524 3.476 24 N -0.830 5.830 25 O -0.592 6.592 26 N -0.349 5.349 27 H 0.272 0.728 28 H 0.085 0.915 29 H 0.044 0.956 30 H 0.213 0.787 31 H 0.173 0.827 32 H 0.420 0.580 33 H 0.176 0.824 34 H 0.255 0.745 35 H 0.158 0.842 36 H 0.146 0.854 37 H 0.421 0.579 38 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.068 -22.138 -1.224 27.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.184 4.184 3 Si 0.777 3.223 4 H -0.192 1.192 5 H -0.151 1.151 6 H -0.203 1.203 7 C -0.585 4.585 8 H 0.044 0.956 9 C 0.119 3.881 10 N -0.125 5.125 11 C -0.086 4.086 12 C -0.323 4.323 13 C 0.010 3.990 14 N -0.269 5.269 15 C 0.389 3.611 16 O -0.417 6.417 17 C -0.257 4.257 18 C -0.226 4.226 19 C -0.080 4.080 20 O -0.067 6.067 21 C 0.038 3.962 22 C -0.111 4.111 23 C 0.309 3.691 24 N -0.395 5.395 25 O -0.472 6.472 26 N -0.180 5.180 27 H 0.081 0.919 28 H 0.103 0.897 29 H 0.061 0.939 30 H 0.230 0.770 31 H 0.190 0.810 32 H 0.257 0.743 33 H 0.193 0.807 34 H 0.270 0.730 35 H 0.175 0.825 36 H 0.163 0.837 37 H 0.253 0.747 38 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 15.629 -21.409 -0.360 26.509 hybrid contribution -0.116 0.657 -0.094 0.674 sum 15.514 -20.752 -0.454 25.914 Atomic orbital electron populations 1.70050 1.08591 1.28824 1.50669 1.25926 0.95776 1.03546 0.93193 0.85613 0.79936 0.77203 0.79591 1.19166 1.15122 1.20275 1.21235 0.90511 0.93744 1.53058 0.95572 1.19914 0.94170 0.74302 0.99706 1.48529 1.34349 1.09974 1.19668 1.23279 0.94280 0.94605 0.96396 1.21777 1.11734 0.97330 1.01417 1.19458 0.97795 0.86943 0.94838 1.42311 1.47756 1.06356 1.30475 1.17476 0.78018 0.82435 0.83220 1.90604 1.40733 1.83895 1.26482 1.20892 1.09024 0.93570 1.02214 1.23193 1.04176 0.98008 0.97180 1.24710 0.93974 0.94580 0.94773 1.83761 1.51451 1.38932 1.32549 1.22052 0.96171 0.86091 0.91891 1.20498 0.88138 1.08845 0.93651 1.20466 0.87938 0.75797 0.84940 1.43557 1.10059 1.70677 1.15189 1.90772 1.85564 1.48882 1.21992 1.77321 1.25953 0.96778 1.17915 0.91861 0.89699 0.93857 0.76993 0.81001 0.74280 0.80695 0.72967 0.82452 0.83681 0.74660 0.75905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.43 13.96 21.45 0.30 -58.14 16 2 C 0.01 0.82 5.47 84.65 0.46 1.28 16 3 Si 0.96 40.91 27.47 68.60 1.88 42.80 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.23 -8.41 6.54 99.48 0.65 -7.76 16 6 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.55 -31.89 9.79 25.60 0.25 -31.63 16 8 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 9 C 0.24 11.16 5.33 85.63 0.46 11.62 16 10 N -0.34 -15.66 3.67 -351.85 -1.29 -16.95 16 11 C 0.06 2.32 11.43 83.52 0.95 3.28 16 12 C -0.29 -11.25 9.60 22.11 0.21 -11.04 16 13 C 0.26 11.04 8.11 133.34 1.08 12.12 16 14 N -0.62 -21.35 5.44 -310.52 -1.69 -23.04 16 15 C 0.60 19.17 7.78 86.64 0.67 19.85 16 16 O -0.54 -18.31 11.97 -4.09 -0.05 -18.36 16 17 C -0.25 -6.59 6.31 -19.00 -0.12 -6.71 16 18 C -0.21 -4.11 10.60 23.65 0.25 -3.86 16 19 C -0.02 -0.23 12.03 66.89 0.80 0.57 16 20 O -0.17 -3.36 10.52 4.45 0.05 -3.31 16 21 C 0.09 2.07 5.87 25.26 0.15 2.22 16 22 C -0.07 -1.17 5.71 29.10 0.17 -1.00 16 23 C 0.52 10.61 8.09 87.66 0.71 11.32 16 24 N -0.83 -8.90 8.87 -173.53 -1.54 -10.44 16 25 O -0.59 -18.49 16.87 -3.03 -0.05 -18.55 16 26 N -0.35 -16.77 12.42 -54.48 -0.68 -17.45 16 27 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 28 H 0.09 3.42 7.12 -2.39 -0.02 3.40 16 29 H 0.04 1.97 7.57 -2.39 -0.02 1.95 16 30 H 0.21 5.68 8.06 -2.91 -0.02 5.66 16 31 H 0.17 6.21 5.91 -2.91 -0.02 6.19 16 32 H 0.42 12.52 7.99 -92.70 -0.74 11.78 16 33 H 0.18 2.76 7.74 -2.91 -0.02 2.74 16 34 H 0.25 1.31 8.06 -2.91 -0.02 1.28 16 35 H 0.16 1.08 8.14 -2.39 -0.02 1.07 16 36 H 0.15 2.38 6.48 -2.39 -0.02 2.37 16 37 H 0.42 1.32 8.83 -92.71 -0.82 0.50 16 38 H 0.41 3.95 8.93 -92.71 -0.83 3.12 16 Total: -1.00 -89.74 339.27 1.71 -88.03 By element: Atomic # 1 Polarization: 28.67 SS G_CDS: -1.27 Total: 27.40 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: 6.05 Total: 8.00 kcal Atomic # 7 Polarization: -121.11 SS G_CDS: -4.90 Total: -126.01 kcal Atomic # 8 Polarization: -40.17 SS G_CDS: -0.05 Total: -40.22 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 1.88 Total: 42.80 kcal Total: -89.74 1.71 -88.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362164435.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.916 kcal (2) G-P(sol) polarization free energy of solvation -89.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds