Wall clock time and date at job start Tue Mar 31 2020 12:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.47186 * 2 1 4 4 N 1.40166 * 126.35459 * 270.03106 * 3 2 1 5 5 C 1.29398 * 108.14527 * 179.97438 * 4 3 2 6 6 N 1.37362 * 108.82738 * 359.97438 * 5 4 3 7 7 N 1.40096 * 125.83266 * 179.97438 * 6 5 4 8 8 C 1.34774 * 120.00186 * 75.02481 * 7 6 5 9 9 O 1.21600 * 119.99694 * 359.97438 * 8 7 6 10 10 C 1.47535 * 120.00237 * 179.97438 * 8 7 6 11 11 C 1.39666 * 120.19977 * 359.97438 * 10 8 7 12 12 C 1.37826 * 119.92252 * 180.02562 * 11 10 8 13 13 C 1.38571 * 120.32201 * 359.97438 * 12 11 10 14 14 C 1.38025 * 120.40291 * 0.02562 * 13 12 11 15 15 C 1.38830 * 120.07198 * 359.97438 * 14 13 12 16 16 O 1.35518 * 120.16236 * 180.02562 * 15 14 13 17 17 C 1.34817 * 117.00226 * 354.39159 * 16 15 14 18 18 H 1.08011 * 119.99389 * 5.05753 * 17 16 15 19 19 C 1.38693 * 120.00626 * 185.05513 * 17 16 15 20 20 N 1.31518 * 120.00332 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 119.99744 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.46914 * 89.99836 * 21 19 17 23 23 H 1.48496 * 109.47199 * 209.99917 * 21 19 17 24 24 H 1.48498 * 109.46974 * 330.00017 * 21 19 17 25 25 C 1.34814 * 108.33530 * 0.22738 * 6 5 4 26 26 O 1.21810 * 126.30243 * 179.73932 * 25 6 5 27 27 H 1.09004 * 109.46782 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46879 * 299.99391 * 1 2 3 29 29 H 1.08999 * 109.47223 * 59.99556 * 1 2 3 30 30 H 1.09003 * 109.46879 * 240.00609 * 2 1 3 31 31 H 1.08999 * 109.47223 * 120.00444 * 2 1 3 32 32 H 1.07996 * 125.59186 * 180.02562 * 5 4 3 33 33 H 0.97004 * 120.00349 * 255.02599 * 7 6 5 34 34 H 1.08003 * 120.03699 * 0.03770 * 11 10 8 35 35 H 1.08001 * 119.83466 * 180.02562 * 12 11 10 36 36 H 1.07999 * 119.79485 * 180.27518 * 13 12 11 37 37 H 1.08003 * 119.96584 * 180.02562 * 14 13 12 38 38 H 0.96997 * 120.00010 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2948 2.1647 -1.1288 5 6 2.7042 3.3237 -0.7245 6 7 2.7089 3.3377 0.6491 7 7 3.0906 4.4168 1.4569 8 6 2.2693 5.4759 1.5989 9 8 1.1972 5.4951 1.0255 10 6 2.6710 6.6120 2.4501 11 6 3.9012 6.5942 3.1111 12 6 4.2705 7.6584 3.9053 13 6 3.4269 8.7480 4.0515 14 6 2.2082 8.7797 3.4045 15 6 1.8196 7.7167 2.6004 16 8 0.6236 7.7461 1.9638 17 6 -0.1933 8.7815 2.2433 18 1 0.1486 9.5815 2.8834 19 6 -1.4726 8.8196 1.7090 20 7 -2.2696 9.8295 1.9820 21 14 -2.0641 7.4356 0.6024 22 1 -2.7085 6.3829 1.4280 23 1 -3.0467 7.9689 -0.3749 24 1 -0.9072 6.8550 -0.1253 25 6 2.2889 2.1339 1.0869 26 8 2.1734 1.7895 2.2496 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.9939 4.1457 -1.3623 33 1 3.9460 4.4018 1.9141 34 1 4.5624 5.7475 2.9999 35 1 5.2223 7.6433 4.4154 36 1 3.7268 9.5793 4.6724 37 1 1.5564 9.6327 3.5231 38 1 -3.1641 9.8562 1.6080 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362947839.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:36 Heat of formation + Delta-G solvation = 59.554183 kcal Electronic energy + Delta-G solvation = -26397.400369 eV Core-core repulsion = 22438.263763 eV Total energy + Delta-G solvation = -3959.136606 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.50446 -39.95343 -38.47928 -37.30520 -36.71327 -35.89024 -33.85470 -32.58391 -31.47177 -29.73562 -29.66658 -29.35989 -25.49081 -24.52577 -23.90383 -22.58845 -21.61234 -21.17109 -20.64214 -18.95533 -18.08603 -17.90414 -16.89319 -16.76093 -16.17065 -15.70227 -15.16551 -15.01355 -14.64126 -14.58739 -14.32685 -14.10498 -13.86697 -13.64803 -13.33930 -13.17930 -12.60831 -12.51238 -12.38573 -12.28909 -12.17163 -11.57875 -11.43810 -11.43110 -11.01704 -10.82605 -10.71754 -10.54097 -10.17072 -9.85021 -9.49158 -9.40327 -9.00412 -8.65604 -8.57307 -7.64637 -6.58968 -4.24345 0.99316 1.34071 1.83823 2.04498 2.57902 2.61778 3.18680 3.24211 3.31879 3.55995 3.79081 4.24505 4.29984 4.38802 4.55047 4.85433 4.88937 4.97101 5.02384 5.08664 5.19870 5.29269 5.37406 5.49906 5.58453 5.72379 5.75755 5.87569 5.97045 6.14420 6.19800 6.37221 6.63049 6.76046 6.83138 7.00221 7.27061 7.33210 7.48451 7.57671 7.81605 7.93545 8.50634 8.75324 9.35500 10.45552 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.011970 B = 0.004801 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.596323 B = 5831.213565 C = 7649.648811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.161 3.839 3 N -0.450 5.450 4 N -0.280 5.280 5 C 0.281 3.719 6 N -0.354 5.354 7 N -0.508 5.508 8 C 0.565 3.435 9 O -0.493 6.493 10 C -0.222 4.222 11 C -0.036 4.036 12 C -0.217 4.217 13 C -0.045 4.045 14 C -0.222 4.222 15 C 0.205 3.795 16 O -0.163 6.163 17 C -0.397 4.397 18 H 0.111 0.889 19 C 0.075 3.925 20 N -0.863 5.863 21 Si 0.899 3.101 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.240 1.240 25 C 0.650 3.350 26 O -0.544 6.544 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.231 0.769 33 H 0.422 0.578 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.141 0.859 38 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.971 -12.440 -3.617 18.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.041 3.959 3 N -0.273 5.273 4 N -0.102 5.102 5 C -0.017 4.017 6 N -0.169 5.169 7 N -0.264 5.264 8 C 0.356 3.644 9 O -0.364 6.364 10 C -0.229 4.229 11 C -0.055 4.055 12 C -0.236 4.236 13 C -0.063 4.063 14 C -0.241 4.241 15 C 0.146 3.854 16 O -0.063 6.063 17 C -0.472 4.472 18 H 0.128 0.872 19 C -0.132 4.132 20 N -0.497 5.497 21 Si 0.724 3.276 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.163 1.163 25 C 0.349 3.651 26 O -0.416 6.416 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.247 0.753 33 H 0.266 0.734 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.159 0.841 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.450 -13.375 -4.213 18.104 hybrid contribution 0.150 0.227 0.497 0.567 sum 11.599 -13.148 -3.715 17.923 Atomic orbital electron populations 1.22237 0.94716 1.02899 1.03459 1.21471 0.94853 0.75427 1.04165 1.48739 1.62376 1.13395 1.02759 1.77057 1.21259 1.01589 1.10305 1.26104 0.96357 0.97303 0.81980 1.44320 1.61017 1.07689 1.03918 1.45189 1.22706 1.09565 1.48903 1.18818 0.83652 0.80708 0.81216 1.90926 1.21117 1.78589 1.45798 1.18332 0.98799 0.94963 1.10812 1.20765 0.93159 0.97356 0.94234 1.20557 1.01328 0.96017 1.05746 1.21023 0.92795 0.96903 0.95618 1.21290 0.98963 1.00732 1.03134 1.18914 0.85914 0.91405 0.89160 1.83756 1.22305 1.45040 1.55166 1.20948 0.94530 0.99395 1.32279 0.87150 1.24497 0.94276 0.97597 0.96848 1.69625 1.08403 1.29654 1.42067 0.86216 0.79825 0.80964 0.80604 1.19890 1.20973 1.16313 1.16663 0.81383 0.81146 0.85927 1.91086 1.60032 1.75342 1.15119 0.90451 0.91866 0.91628 0.88600 0.88720 0.75276 0.73401 0.86696 0.86613 0.86505 0.84114 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.78 10.24 37.16 0.38 -1.40 16 2 C 0.16 1.65 7.11 -4.04 -0.03 1.62 16 3 N -0.45 -6.32 3.63 -65.12 -0.24 -6.56 16 4 N -0.28 -3.72 12.53 29.87 0.37 -3.35 16 5 C 0.28 3.58 12.82 -89.12 -1.14 2.44 16 6 N -0.35 -5.48 3.08 -17.37 -0.05 -5.53 16 7 N -0.51 -7.69 6.20 30.46 0.19 -7.50 16 8 C 0.56 10.98 7.85 -12.47 -0.10 10.88 16 9 O -0.49 -11.92 15.44 -16.58 -0.26 -12.18 16 10 C -0.22 -4.20 5.89 -104.81 -0.62 -4.82 16 11 C -0.04 -0.53 9.53 -39.20 -0.37 -0.90 16 12 C -0.22 -3.05 10.02 -39.61 -0.40 -3.44 16 13 C -0.04 -0.70 10.03 -39.54 -0.40 -1.10 16 14 C -0.22 -4.36 9.16 -39.44 -0.36 -4.72 16 15 C 0.20 4.55 6.66 -38.60 -0.26 4.30 16 16 O -0.16 -4.30 6.67 -21.06 -0.14 -4.44 16 17 C -0.40 -10.95 9.95 30.90 0.31 -10.64 16 18 H 0.11 3.01 5.44 -52.48 -0.29 2.72 16 19 C 0.07 2.09 5.49 -17.52 -0.10 1.99 16 20 N -0.86 -24.44 13.96 55.48 0.77 -23.66 16 21 Si 0.90 22.86 28.62 -169.99 -4.86 17.99 16 22 H -0.27 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.24 -6.38 7.11 56.52 0.40 -5.98 16 25 C 0.65 11.05 8.79 -86.73 -0.76 10.29 16 26 O -0.54 -10.82 17.90 5.09 0.09 -10.72 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.89 8.10 -51.93 -0.42 0.47 16 32 H 0.23 2.01 8.06 -52.49 -0.42 1.59 16 33 H 0.42 4.84 6.86 -182.60 -1.25 3.59 16 34 H 0.12 1.19 6.40 -52.48 -0.34 0.85 16 35 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.14 2.88 5.64 -52.48 -0.30 2.58 16 38 H 0.28 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 340.37 15.07 5.13 5.13 Total: -1.00 -35.96 340.37 -7.52 -43.48 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -4.69 Total: 2.86 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -3.84 Total: 4.49 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: 1.05 Total: -46.61 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.31 Total: -27.35 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -4.86 Total: 17.99 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.96 -7.52 -43.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362947839.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.033 kcal (2) G-P(sol) polarization free energy of solvation -35.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds