Wall clock time and date at job start Tue Mar 31 2020 12:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.47186 * 2 1 4 4 N 1.40166 * 126.35459 * 270.03106 * 3 2 1 5 5 C 1.29398 * 108.14527 * 179.97438 * 4 3 2 6 6 N 1.37362 * 108.82738 * 359.97438 * 5 4 3 7 7 N 1.40096 * 125.83266 * 179.97438 * 6 5 4 8 8 C 1.34774 * 120.00186 * 75.02481 * 7 6 5 9 9 O 1.21600 * 119.99694 * 359.97438 * 8 7 6 10 10 C 1.47535 * 120.00237 * 179.97438 * 8 7 6 11 11 C 1.39666 * 120.19977 * 359.97438 * 10 8 7 12 12 C 1.37826 * 119.92252 * 180.02562 * 11 10 8 13 13 C 1.38571 * 120.32201 * 359.97438 * 12 11 10 14 14 C 1.38025 * 120.40291 * 0.02562 * 13 12 11 15 15 C 1.38830 * 120.07198 * 359.97438 * 14 13 12 16 16 O 1.35518 * 120.16236 * 180.02562 * 15 14 13 17 17 C 1.34817 * 117.00226 * 354.39159 * 16 15 14 18 18 H 1.08011 * 119.99389 * 5.05753 * 17 16 15 19 19 C 1.38693 * 120.00626 * 185.05513 * 17 16 15 20 20 N 1.31518 * 120.00332 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 119.99744 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.46914 * 89.99836 * 21 19 17 23 23 H 1.48496 * 109.47199 * 209.99917 * 21 19 17 24 24 H 1.48498 * 109.46974 * 330.00017 * 21 19 17 25 25 C 1.34814 * 108.33530 * 0.22738 * 6 5 4 26 26 O 1.21810 * 126.30243 * 179.73932 * 25 6 5 27 27 H 1.09004 * 109.46782 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46879 * 299.99391 * 1 2 3 29 29 H 1.08999 * 109.47223 * 59.99556 * 1 2 3 30 30 H 1.09003 * 109.46879 * 240.00609 * 2 1 3 31 31 H 1.08999 * 109.47223 * 120.00444 * 2 1 3 32 32 H 1.07996 * 125.59186 * 180.02562 * 5 4 3 33 33 H 0.97004 * 120.00349 * 255.02599 * 7 6 5 34 34 H 1.08003 * 120.03699 * 0.03770 * 11 10 8 35 35 H 1.08001 * 119.83466 * 180.02562 * 12 11 10 36 36 H 1.07999 * 119.79485 * 180.27518 * 13 12 11 37 37 H 1.08003 * 119.96584 * 180.02562 * 14 13 12 38 38 H 0.96997 * 120.00010 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2948 2.1647 -1.1288 5 6 2.7042 3.3237 -0.7245 6 7 2.7089 3.3377 0.6491 7 7 3.0906 4.4168 1.4569 8 6 2.2693 5.4759 1.5989 9 8 1.1972 5.4951 1.0255 10 6 2.6710 6.6120 2.4501 11 6 3.9012 6.5942 3.1111 12 6 4.2705 7.6584 3.9053 13 6 3.4269 8.7480 4.0515 14 6 2.2082 8.7797 3.4045 15 6 1.8196 7.7167 2.6004 16 8 0.6236 7.7461 1.9638 17 6 -0.1933 8.7815 2.2433 18 1 0.1486 9.5815 2.8834 19 6 -1.4726 8.8196 1.7090 20 7 -2.2696 9.8295 1.9820 21 14 -2.0641 7.4356 0.6024 22 1 -2.7085 6.3829 1.4280 23 1 -3.0467 7.9689 -0.3749 24 1 -0.9072 6.8550 -0.1253 25 6 2.2889 2.1339 1.0869 26 8 2.1734 1.7895 2.2496 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.9939 4.1457 -1.3623 33 1 3.9460 4.4018 1.9141 34 1 4.5624 5.7475 2.9999 35 1 5.2223 7.6433 4.4154 36 1 3.7268 9.5793 4.6724 37 1 1.5564 9.6327 3.5231 38 1 -3.1641 9.8562 1.6080 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362947839.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:35 Heat of formation + Delta-G solvation = 35.734426 kcal Electronic energy + Delta-G solvation = -26398.433271 eV Core-core repulsion = 22438.263763 eV Total energy + Delta-G solvation = -3960.169508 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.68114 -41.49371 -40.05557 -38.61822 -38.24441 -37.15478 -35.00557 -34.55615 -32.81531 -30.97388 -30.85359 -30.76438 -27.36406 -25.67286 -25.13563 -23.85346 -22.97222 -22.37910 -22.05124 -20.28385 -19.90859 -19.34557 -18.35667 -17.96732 -17.42232 -16.98988 -16.74661 -16.26020 -16.15702 -16.05964 -15.85346 -15.51275 -15.34135 -14.98726 -14.76746 -14.32183 -14.24032 -14.09402 -13.77711 -13.46800 -13.21007 -13.08502 -12.90665 -12.65854 -12.46071 -12.32551 -12.08587 -11.97461 -11.80045 -11.58375 -11.04552 -11.00675 -10.80766 -9.97250 -9.83317 -9.20888 -8.61609 -6.30183 -0.20360 -0.08234 0.61734 0.79237 1.20615 1.26074 1.33484 1.50566 1.52142 1.72536 2.23315 2.61356 2.71134 2.92621 3.09833 3.37689 3.64209 3.95633 4.01630 4.06304 4.22425 4.25202 4.31711 4.40341 4.44213 4.53928 4.62925 4.72785 4.84879 5.00080 5.06871 5.15652 5.23582 5.43819 5.55594 5.56626 5.66942 5.79106 6.03149 6.11290 6.35166 6.62902 6.75226 7.11542 7.52245 8.48636 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.011970 B = 0.004801 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.596323 B = 5831.213565 C = 7649.648811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.150 3.850 3 N -0.445 5.445 4 N -0.280 5.280 5 C 0.283 3.717 6 N -0.361 5.361 7 N -0.486 5.486 8 C 0.566 3.434 9 O -0.546 6.546 10 C -0.225 4.225 11 C -0.025 4.025 12 C -0.185 4.185 13 C -0.033 4.033 14 C -0.247 4.247 15 C 0.170 3.830 16 O -0.209 6.209 17 C -0.401 4.401 18 H 0.097 0.903 19 C 0.030 3.970 20 N -0.907 5.907 21 Si 0.950 3.050 22 H -0.286 1.286 23 H -0.263 1.263 24 H -0.262 1.262 25 C 0.634 3.366 26 O -0.582 6.582 27 H 0.111 0.889 28 H 0.030 0.970 29 H 0.056 0.944 30 H 0.129 0.871 31 H 0.102 0.898 32 H 0.266 0.734 33 H 0.443 0.557 34 H 0.168 0.832 35 H 0.170 0.830 36 H 0.154 0.846 37 H 0.119 0.881 38 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.162 -14.249 -3.366 22.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.032 3.968 3 N -0.267 5.267 4 N -0.102 5.102 5 C -0.015 4.015 6 N -0.176 5.176 7 N -0.243 5.243 8 C 0.358 3.642 9 O -0.421 6.421 10 C -0.231 4.231 11 C -0.043 4.043 12 C -0.203 4.203 13 C -0.051 4.051 14 C -0.266 4.266 15 C 0.116 3.884 16 O -0.113 6.113 17 C -0.477 4.477 18 H 0.115 0.885 19 C -0.171 4.171 20 N -0.546 5.546 21 Si 0.774 3.226 22 H -0.212 1.212 23 H -0.188 1.188 24 H -0.187 1.187 25 C 0.332 3.668 26 O -0.458 6.458 27 H 0.129 0.871 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.147 0.853 31 H 0.121 0.879 32 H 0.282 0.718 33 H 0.290 0.710 34 H 0.185 0.815 35 H 0.188 0.812 36 H 0.172 0.828 37 H 0.137 0.863 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 15.737 -15.226 -3.976 22.255 hybrid contribution -0.632 0.606 0.584 1.052 sum 15.105 -14.620 -3.392 21.294 Atomic orbital electron populations 1.22212 0.94781 1.04457 1.01326 1.21892 0.94792 0.73962 1.06168 1.49129 1.61339 1.14182 1.02067 1.77080 1.21336 1.01920 1.09856 1.26881 0.95531 0.98051 0.81035 1.44492 1.61142 1.07099 1.04879 1.44769 1.22497 1.08524 1.48477 1.18974 0.83153 0.81590 0.80513 1.90918 1.23535 1.79848 1.47824 1.18709 0.99845 0.93796 1.10755 1.21379 0.91511 0.99243 0.92207 1.21263 1.02223 0.93817 1.03026 1.21521 0.90808 0.98676 0.94097 1.21338 1.00915 0.99846 1.04521 1.19661 0.85391 0.93371 0.89956 1.83748 1.24148 1.45142 1.58278 1.20902 0.95088 0.99741 1.31978 0.88517 1.24973 0.94755 0.99040 0.98309 1.69665 1.09047 1.31140 1.44787 0.85506 0.78687 0.78875 0.79518 1.21197 1.18792 1.18655 1.16973 0.81769 0.81876 0.86141 1.91041 1.61817 1.76266 1.16643 0.87096 0.95070 0.92506 0.85328 0.87938 0.71814 0.70965 0.81456 0.81208 0.82795 0.86313 0.90389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.29 10.24 71.98 0.74 -2.55 16 2 C 0.15 2.81 7.11 86.38 0.61 3.43 16 3 N -0.45 -11.93 3.63 -478.01 -1.73 -13.66 16 4 N -0.28 -6.94 12.53 -59.42 -0.74 -7.69 16 5 C 0.28 6.64 12.82 179.82 2.30 8.94 16 6 N -0.36 -10.60 3.08 -327.00 -1.01 -11.60 16 7 N -0.49 -13.59 6.20 -175.81 -1.09 -14.68 16 8 C 0.57 21.52 7.85 86.70 0.68 22.21 16 9 O -0.55 -27.04 15.44 16.87 0.26 -26.78 16 10 C -0.22 -8.10 5.89 -19.99 -0.12 -8.21 16 11 C -0.03 -0.59 9.53 22.52 0.21 -0.38 16 12 C -0.19 -3.94 10.02 22.25 0.22 -3.72 16 13 C -0.03 -0.89 10.03 22.30 0.22 -0.67 16 14 C -0.25 -9.69 9.16 22.36 0.20 -9.48 16 15 C 0.17 7.69 6.66 22.91 0.15 7.84 16 16 O -0.21 -11.67 6.67 0.83 0.01 -11.66 16 17 C -0.40 -23.68 9.95 67.93 0.68 -23.01 16 18 H 0.10 5.73 5.44 -2.91 -0.02 5.71 16 19 C 0.03 1.80 5.49 84.85 0.47 2.26 16 20 N -0.91 -54.45 13.96 21.62 0.30 -54.15 16 21 Si 0.95 50.19 28.62 68.60 1.96 52.15 16 22 H -0.29 -15.35 7.11 99.48 0.71 -14.64 16 23 H -0.26 -12.71 7.11 99.48 0.71 -12.01 16 24 H -0.26 -14.63 7.11 99.48 0.71 -13.93 16 25 C 0.63 21.00 8.79 178.99 1.57 22.58 16 26 O -0.58 -23.00 17.90 -4.70 -0.08 -23.09 16 27 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.10 1.77 8.10 -2.39 -0.02 1.75 16 32 H 0.27 3.92 8.06 -2.91 -0.02 3.90 16 33 H 0.44 8.33 6.86 -213.32 -1.46 6.87 16 34 H 0.17 2.21 6.40 -2.91 -0.02 2.19 16 35 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 36 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 37 H 0.12 5.14 5.64 -2.91 -0.02 5.13 16 38 H 0.29 15.88 8.31 -92.71 -0.77 15.11 16 Total: -1.00 -87.38 340.37 5.49 -81.88 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -0.33 Total: 10.03 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: 7.95 Total: 19.24 kcal Atomic # 7 Polarization: -97.51 SS G_CDS: -4.27 Total: -101.78 kcal Atomic # 8 Polarization: -61.71 SS G_CDS: 0.18 Total: -61.53 kcal Atomic # 14 Polarization: 50.19 SS G_CDS: 1.96 Total: 52.15 kcal Total: -87.38 5.49 -81.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362947839.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.618 kcal (2) G-P(sol) polarization free energy of solvation -87.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds