Wall clock time and date at job start Tue Mar 31 2020 12:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47014 * 2 1 4 4 N 1.29994 * 126.21919 * 269.98135 * 3 2 1 5 5 O 1.21286 * 110.46337 * 179.76530 * 4 3 2 6 6 C 1.34008 * 109.74915 * 0.40108 * 5 4 3 7 7 N 1.37952 * 126.65178 * 179.86589 * 6 5 4 8 8 C 1.34774 * 120.00306 * 359.68912 * 7 6 5 9 9 O 1.21568 * 119.99711 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00502 * 180.27506 * 8 7 6 11 11 C 1.40011 * 120.00075 * 175.21695 * 10 8 7 12 12 C 1.38917 * 120.00099 * 214.85029 * 11 10 8 13 13 C 1.38011 * 119.99853 * 179.77296 * 12 11 10 14 14 C 1.38907 * 119.99952 * 0.50273 * 13 12 11 15 15 O 1.35779 * 119.99494 * 179.72393 * 14 13 12 16 16 C 1.34816 * 116.99858 * 185.36918 * 15 14 13 17 17 H 1.08003 * 119.99881 * 354.96501 * 16 15 14 18 18 C 1.38624 * 120.00182 * 174.96531 * 16 15 14 19 19 N 1.31579 * 120.00252 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99989 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47133 * 90.00431 * 20 18 16 22 22 H 1.48504 * 109.47210 * 210.00004 * 20 18 16 23 23 H 1.48493 * 109.47315 * 330.00161 * 20 18 16 24 24 C 1.38899 * 120.00016 * 359.75558 * 14 13 12 25 25 C 1.38006 * 120.00529 * 359.97438 * 24 14 13 26 26 N 1.32013 * 106.69445 * 359.60686 * 6 5 4 27 27 H 1.09000 * 109.46827 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.47219 * 299.99353 * 1 2 3 29 29 H 1.08999 * 109.47584 * 59.99895 * 1 2 3 30 30 H 1.09000 * 109.46973 * 240.00762 * 2 1 3 31 31 H 1.08999 * 109.47584 * 120.00104 * 2 1 3 32 32 H 0.96999 * 120.00176 * 179.68319 * 7 6 5 33 33 H 0.97002 * 119.99657 * 355.21471 * 10 8 7 34 34 H 1.08002 * 119.99679 * 0.02676 * 12 11 10 35 35 H 1.07999 * 119.99536 * 180.25837 * 13 12 11 36 36 H 0.96990 * 120.00297 * 179.97438 * 19 18 16 37 37 H 1.08007 * 119.99867 * 179.97438 * 24 14 13 38 38 H 1.08001 * 120.00145 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2886 2.1449 -1.0487 5 8 2.6732 3.2471 -0.7194 6 6 2.7089 3.3335 0.6174 7 7 3.0956 4.4286 1.3618 8 6 3.4951 5.5572 0.7429 9 8 3.5152 5.6099 -0.4715 10 7 3.8782 6.6253 1.4701 11 6 4.3877 7.7616 0.8302 12 6 5.3922 8.5072 1.4342 13 6 5.8977 9.6246 0.8012 14 6 5.3948 10.0097 -0.4350 15 8 5.8883 11.1122 -1.0550 16 6 5.2825 11.4948 -2.1970 17 1 4.4979 10.8864 -2.6222 18 6 5.6666 12.6691 -2.8256 19 7 6.6221 13.4106 -2.3075 20 14 4.8277 13.1989 -4.4084 21 1 3.6530 14.0482 -4.0857 22 1 5.7839 13.9724 -5.2406 23 1 4.3792 11.9975 -5.1570 24 6 4.3867 9.2672 -1.0365 25 6 3.8850 8.1467 -0.4062 26 7 2.2969 2.1692 1.0838 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.0798 4.3865 2.3308 33 1 3.8008 6.6068 2.4368 34 1 5.7804 8.2101 2.3973 35 1 6.6816 10.2018 1.2690 36 1 6.8912 14.2320 -2.7475 37 1 3.9954 9.5669 -1.9975 38 1 3.1009 7.5697 -0.8738 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365058248.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:50 Heat of formation + Delta-G solvation = 57.341609 kcal Electronic energy + Delta-G solvation = -24959.538686 eV Core-core repulsion = 21000.306135 eV Total energy + Delta-G solvation = -3959.232550 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.64882 -40.91931 -38.97648 -37.07596 -36.58388 -35.66921 -34.31748 -33.14445 -32.23107 -30.92524 -30.28733 -28.06612 -25.46820 -25.36163 -24.21111 -23.20242 -22.33715 -21.34248 -20.56683 -18.97862 -18.84972 -18.33662 -17.97924 -17.33975 -16.71267 -16.23501 -15.73368 -15.05414 -14.89324 -14.54194 -14.50034 -14.30700 -13.70708 -13.64827 -13.33852 -12.96532 -12.75745 -12.65077 -12.46271 -12.11809 -11.82830 -11.68689 -11.63870 -11.63348 -11.20739 -11.16179 -11.05230 -10.88588 -10.48053 -10.41589 -9.89005 -9.33812 -9.30026 -8.76588 -8.29155 -7.05893 -6.48823 -4.06452 0.97229 1.34410 1.88995 2.08507 2.17972 2.78390 2.92781 3.13430 3.13978 3.18745 3.48219 3.83084 3.95069 4.19176 4.49067 4.76289 4.78027 4.86331 5.04995 5.18932 5.37653 5.38377 5.42589 5.57080 5.60576 5.66605 5.75659 5.82442 5.91069 5.99277 6.13363 6.31483 6.61089 6.81190 6.91247 6.98793 7.24011 7.36524 7.50330 7.66304 7.96021 8.06952 8.11304 8.96856 9.64404 10.68704 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.023990 B = 0.002327 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.892844 B =12028.762076 C =13013.837261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.030 4.030 3 C 0.190 3.810 4 N -0.387 5.387 5 O 0.092 5.908 6 C 0.431 3.569 7 N -0.616 5.616 8 C 0.695 3.305 9 O -0.529 6.529 10 N -0.652 5.652 11 C 0.037 3.963 12 C -0.086 4.086 13 C -0.178 4.178 14 C 0.149 3.851 15 O -0.173 6.173 16 C -0.391 4.391 17 H 0.094 0.906 18 C 0.040 3.960 19 N -0.861 5.861 20 Si 0.941 3.059 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.266 1.266 24 C -0.220 4.220 25 C -0.060 4.060 26 N -0.512 5.512 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.435 0.565 33 H 0.405 0.595 34 H 0.117 0.883 35 H 0.124 0.876 36 H 0.271 0.729 37 H 0.132 0.868 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.264 -20.757 10.280 24.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.069 4.069 3 C -0.084 4.084 4 N -0.101 5.101 5 O 0.040 5.960 6 C 0.122 3.878 7 N -0.279 5.279 8 C 0.394 3.606 9 O -0.399 6.399 10 N -0.299 5.299 11 C -0.055 4.055 12 C -0.106 4.106 13 C -0.198 4.198 14 C 0.095 3.905 15 O -0.076 6.076 16 C -0.467 4.467 17 H 0.111 0.889 18 C -0.165 4.165 19 N -0.495 5.495 20 Si 0.766 3.234 21 H -0.198 1.198 22 H -0.202 1.202 23 H -0.191 1.191 24 C -0.240 4.240 25 C -0.080 4.080 26 N -0.257 5.257 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.276 0.724 33 H 0.240 0.760 34 H 0.135 0.865 35 H 0.142 0.858 36 H 0.081 0.919 37 H 0.150 0.850 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.069 -20.778 8.612 24.252 hybrid contribution -0.348 0.455 0.350 0.672 sum -9.417 -20.323 8.962 24.125 Atomic orbital electron populations 1.21743 0.93267 1.02785 1.02808 1.19935 0.96800 0.85460 1.04746 1.25533 0.99552 1.00081 0.83196 1.74693 1.19976 0.92565 1.22820 1.85673 1.62295 1.26837 1.21203 1.23715 0.93577 0.88326 0.82230 1.41434 1.67607 1.08667 1.10176 1.15880 0.79319 0.79477 0.85905 1.91104 1.56813 1.81211 1.10805 1.42074 1.65502 1.12747 1.09572 1.16973 1.01417 0.90017 0.97125 1.20303 0.94973 0.95722 0.99619 1.19984 1.04953 0.99914 0.94939 1.19437 0.91601 0.88092 0.91395 1.83974 1.51088 1.36485 1.36070 1.21358 1.19477 1.07118 0.98754 0.88886 1.25302 0.96635 0.94992 0.99571 1.70041 1.26819 1.13594 1.39063 0.85700 0.78702 0.79148 0.79867 1.19827 1.20231 1.19073 1.21103 1.02199 0.97922 1.02774 1.20863 0.98517 0.94930 0.93665 1.72185 1.24711 1.00422 1.28362 0.91045 0.91971 0.92201 0.88918 0.88551 0.72437 0.76039 0.86517 0.85847 0.91948 0.85022 0.85505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 37.16 0.37 -0.56 16 2 C -0.03 -0.22 6.56 -27.88 -0.18 -0.41 16 3 C 0.19 2.19 7.46 -156.47 -1.17 1.03 16 4 N -0.39 -5.46 12.15 31.12 0.38 -5.08 16 5 O 0.09 1.40 9.69 -4.45 -0.04 1.35 16 6 C 0.43 5.35 8.99 -87.12 -0.78 4.57 16 7 N -0.62 -5.97 5.37 -17.65 -0.09 -6.07 16 8 C 0.69 9.08 8.36 -86.92 -0.73 8.36 16 9 O -0.53 -9.39 12.58 -16.31 -0.21 -9.60 16 10 N -0.65 -7.55 5.34 -14.19 -0.08 -7.63 16 11 C 0.04 0.59 6.30 -83.62 -0.53 0.07 16 12 C -0.09 -1.36 9.96 -39.41 -0.39 -1.75 16 13 C -0.18 -3.49 9.99 -39.42 -0.39 -3.88 16 14 C 0.15 3.49 6.65 -39.09 -0.26 3.23 16 15 O -0.17 -4.82 9.76 0.00 0.00 -4.82 16 16 C -0.39 -10.77 9.48 30.87 0.29 -10.48 16 17 H 0.09 2.39 5.20 -52.48 -0.27 2.11 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -24.85 13.67 55.48 0.76 -24.09 16 20 Si 0.94 20.43 29.55 -169.99 -5.02 15.40 16 21 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 22 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 23 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 24 C -0.22 -4.78 9.16 -39.42 -0.36 -5.14 16 25 C -0.06 -1.14 8.69 -39.42 -0.34 -1.48 16 26 N -0.51 -5.96 11.59 -12.97 -0.15 -6.11 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.42 8.14 -51.92 -0.42 -0.01 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.43 2.33 8.84 -40.82 -0.36 1.97 16 33 H 0.40 2.83 8.84 -40.82 -0.36 2.47 16 34 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 36 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.13 2.90 5.63 -52.48 -0.30 2.61 16 38 H 0.13 2.41 6.22 -52.49 -0.33 2.09 16 LS Contribution 337.87 15.07 5.09 5.09 Total: -1.00 -34.32 337.87 -7.65 -41.97 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -3.71 Total: 5.05 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -4.57 Total: -5.47 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: 0.82 Total: -48.98 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: -0.25 Total: -13.07 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.32 -7.65 -41.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365058248.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.313 kcal (2) G-P(sol) polarization free energy of solvation -34.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds